Rmu_sc0003266.1_g000006

DegT/DnrJ/EryC1/StrS aminotransferase family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003266.1
Physical Location & Seq
Forward (+)
29230 .. 33582
4353 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003266.1_g000006.1.cds

Sequence Viewer

Length: 1500 bp
atggaagagaaacgagaattgttatccagtgtagcaaagagcattacagcatcaccaattcaggaactgtcccatcttgcccagagatgcaacgccatcaacctcgccgaaggttttccagacttccctgcaccttcccacatcaaagacgctgccatttccgctatcaattccgacttcaatcagtacaggcacgtgcaaggaatatgtgactacgtggcaatcgtaatgaaccaaatgcacggattagatgtcaaccctctcactgatgtagctatttgttgtggccaaactgaagcatttgctgcagcaacgtttgcaataatagacaagggtgatgaagttgtactgtttgacccttgttatgaaacatatgaaggatgtattaagatggctgggggagtcccagtatatgtgccccttgatccacctcactggaccttggaccctaacaaattcgtcaagtctttttctcggagaacaaaagccgtaatactcaacagtcctcacaatccaaccggcaaagttttcaccaaagatgaacttgagattattgctggagaatgccgcaccaggaactgcctagctataacagatgaagtatatgaacatataacatttaacagtgagaagcatatatcccttgcctcgtttccaggaatgagagagcggaccatcatcacatcttccttatctaaaacgttcagtgtcacaggatggagggttggatgggcaattgctccagcttttattgcctctgcaatcagaaacattcatgttaaagttacagattctgcaccagcacctttccaagaagctgccttgactgctttgagaagtccccctgaatactttgaatcattgagaagtgattatgaatcaaggagagactacatcgtcaatttacttgccagaattggattcaagattcatttcaagcctcagggtgcattctttttatttgcagagatacctgaaaattgcccactttctgatgtagagtatgttagaaagttaatacaacaagcaggggtagtggctgtgccaggatgtggattttttcatgcagactcatctgtggagaaactttctcaggatggttataactaccaggatagatacatcaggtttgctttctgtaaaagtgatcatactttggcttctgcagcaaaaagacttggggagcttttggatgctgcaggggtggtgtttgacgacggtaaggcggcgacgcaggtcaaaagtctcgtttggatcgcgattgtccaggtttcgtggcaacgcaacagattggtcgagcggcgactccctgcaaggctctatggagtttctggtaggagggcggcgaccctaggttttgctgggtggcggtttgatttgcttctaggccgaggtcccggagtttctcccgtagtccaaggcaatggtggaggagcgtgcccgcccgccagaggattgatggagcgcgttcttccagcggctccgatctgctcgatctga

Protein Analysis

499

Amino Acids

54.83

Weight (kDa)

7.16

Isoelectric Point (pI)

44.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1104
AasI GACNNNNNNGTC 1 cut(s) 896
Acc36I ACCTGC 1 cut(s) 1225
AccB7I CCANNNNNTGG 1 cut(s) 1052
AccBSI CCGCTC 2 cut(s) 670, 1300
AccII CGCG 2 cut(s) 1259, 1467
AclI AACGTT 2 cut(s) 314, 701
AclWI GGATC 2 cut(s) 419, 1262
AcoI YGGCCR 1 cut(s) 286
AcsI RAATTY 1 cut(s) 455
AcuI CTGAAG 1 cut(s) 315
AcvI CACGTG 1 cut(s) 196
AfaI GTAC 2 cut(s) 188, 348
AfiI CCNNNNNNNGG 2 cut(s) 1052, 1451
AgsI TTSAA 4 cut(s) 181, 857, 925, 937
AjnI CCWGG 5 cut(s) 572, 655, 1045, 1110, 1266
AluBI AGCT 5 cut(s) 275, 587, 746, 818, 1186
AluI AGCT 5 cut(s) 275, 587, 746, 818, 1186
Alw26I GTCTC 2 cut(s) 882, 1250
AlwI GGATC 2 cut(s) 419, 1262
AlwNI CAGNNNCTG 3 cut(s) 67, 579, 794
AoxI GGCC 2 cut(s) 286, 1387
ApeKI GCWGC 6 cut(s) 152, 305, 308, 818, 1166, 1196
ApoI RAATTY 1 cut(s) 455
Asp700I GAANNNNTTC 1 cut(s) 114
AspA2I CCTAGG 1 cut(s) 1351
AspLEI GCGC 1 cut(s) 1467
AspS9I GGNCC 4 cut(s) 438, 445, 672, 1394
AsuC2I CCSGG 1 cut(s) 1398
AsuHPI GGTGA 3 cut(s) 45, 347, 523
AvaII GGWCC 4 cut(s) 438, 445, 672, 1394
AvrII CCTAGG 1 cut(s) 1351
AxyI CCTNAGG 1 cut(s) 942
BaeGI GKGCMC 2 cut(s) 420, 1442
BalI TGGCCA 1 cut(s) 288
BbrPI CACGTG 1 cut(s) 196
BbvI GCAGC 6 cut(s) 139, 292, 320, 805, 1178, 1183
BccI CCATC 8 cut(s) 81, 104, 385, 683, 711, 723, 1091, 1453
BceAI ACGGC 1 cut(s) 473
BciT130I CCWGG 5 cut(s) 574, 657, 1047, 1112, 1268
BclI TGATCA 1 cut(s) 1147
BcnI CCSGG 1 cut(s) 1398
BcoDI GTCTC 2 cut(s) 882, 1250
BfaI CTAG 3 cut(s) 584, 1352, 1385
BfmI CTRYAG 3 cut(s) 306, 1164, 1197
BfuAI ACCTGC 1 cut(s) 1225
BlnI CCTAGG 1 cut(s) 1351
Bme1390I CCNGG 6 cut(s) 574, 657, 1047, 1112, 1268, 1398
Bme18I GGWCC 4 cut(s) 438, 445, 672, 1394
BmgT120I GGNCC 4 cut(s) 438, 445, 672, 1394
BmiI GGNNCC 3 cut(s) 447, 1396, 1482
BmrFI CCNGG 6 cut(s) 574, 657, 1047, 1112, 1268, 1398
BmrI ACTGGG 1 cut(s) 401
BmsI GCATC 3 cut(s) 59, 77, 1183
BmuI ACTGGG 1 cut(s) 401
BoxI GACNNNNGTC 1 cut(s) 1235
BpmI CTGGAG 2 cut(s) 579, 726
BpuEI CTTGAG 1 cut(s) 566
BpuMI CCSGG 1 cut(s) 1398
BsaAI YACGTR 2 cut(s) 196, 217
BsaJI CCNNGG 4 cut(s) 441, 1351, 1390, 1417
BsaXI ACNNNNNCTCC 2 cut(s) 393, 423
Bsc4I CCNNNNNNNGG 2 cut(s) 1052, 1451
Bse118I RCCGGY 1 cut(s) 518
Bse1I ACTGG 3 cut(s) 27, 407, 440
Bse21I CCTNAGG 1 cut(s) 942
Bse3DI GCAATG 1 cut(s) 1429
BseBI CCWGG 5 cut(s) 574, 657, 1047, 1112, 1268
BseDI CCNNGG 4 cut(s) 441, 1351, 1390, 1417
BseGI GGATG 6 cut(s) 386, 722, 734, 1055, 1102, 1198
BseLI CCNNNNNNNGG 2 cut(s) 1052, 1451
BseMI GCAATG 1 cut(s) 1429
BseMII CTCAG 2 cut(s) 956, 1106
BseNI ACTGG 3 cut(s) 27, 407, 440
BseRI GAGGAG 1 cut(s) 1446
BseSI GKGCMC 2 cut(s) 420, 1442
BseXI GCAGC 6 cut(s) 139, 292, 320, 805, 1178, 1183
BseYI CCCAGC 2 cut(s) 395, 1361
BsgI GTGCAG 2 cut(s) 114, 780
Bsh1236I CGCG 2 cut(s) 1259, 1467
BshFI GGCC 2 cut(s) 288, 1389
BsiSI CCGG 2 cut(s) 519, 1398
BslFI GGGAC 4 cut(s) 55, 389, 825, 1380
BslI CCNNNNNNNGG 2 cut(s) 1052, 1451
BsmAI GTCTC 2 cut(s) 882, 1250
BsmFI GGGAC 4 cut(s) 55, 389, 825, 1380
BsmI GAATGC 2 cut(s) 569, 950
BsnI GGCC 2 cut(s) 288, 1389
Bsp1286I GDGCHC 2 cut(s) 420, 1442
Bsp143I GATC 5 cut(s) 424, 1147, 1254, 1485, 1494
Bsp68I TCGCGA 1 cut(s) 1259
BspANI GGCC 2 cut(s) 288, 1389
BspCNI CTCAG 2 cut(s) 955, 1105
BspFNI CGCG 2 cut(s) 1259, 1467
BspLI GGNNCC 3 cut(s) 447, 1396, 1482
BspMAI CTGCAG 3 cut(s) 310, 1168, 1201
BspMI ACCTGC 1 cut(s) 1225
BspPI GGATC 2 cut(s) 419, 1262
BsrBI CCGCTC 2 cut(s) 670, 1300
BsrDI GCAATG 1 cut(s) 1429
BsrFI RCCGGY 1 cut(s) 518
BsrI ACTGG 3 cut(s) 27, 407, 440
BssAI RCCGGY 1 cut(s) 518
BssECI CCNNGG 4 cut(s) 441, 1351, 1390, 1417
BssMI GATC 5 cut(s) 424, 1147, 1254, 1485, 1494
BssT1I CCWWGG 3 cut(s) 441, 1351, 1417
Bst2UI CCWGG 5 cut(s) 574, 657, 1047, 1112, 1268
Bst4CI ACNGT 5 cut(s) 69, 351, 503, 626, 1220
BstAPI GCANNNNNTGC 2 cut(s) 305, 317
BstBAI YACGTR 2 cut(s) 196, 217
BstC8I GCNNGC 3 cut(s) 1438, 1442, 1446
BstDEI CTNAG 2 cut(s) 942, 1092
BstF5I GGATG 6 cut(s) 386, 722, 734, 1055, 1102, 1198
BstFNI CGCG 2 cut(s) 1259, 1467
BstHHI GCGC 1 cut(s) 1467
BstKTI GATC 5 cut(s) 427, 1150, 1257, 1488, 1497
BstMAI GTCTC 2 cut(s) 882, 1250
BstMBI GATC 5 cut(s) 424, 1147, 1254, 1485, 1494
BstMWI GCNNNNNNNGC 6 cut(s) 161, 305, 317, 752, 827, 1166
BstNI CCWGG 5 cut(s) 574, 657, 1047, 1112, 1268
BstPAI GACNNNNGTC 1 cut(s) 1235
BstSCI CCNGG 6 cut(s) 572, 655, 1045, 1110, 1266, 1396
BstSFI CTRYAG 3 cut(s) 306, 1164, 1197
BstSLI GKGCMC 2 cut(s) 420, 1442
BstUI CGCG 2 cut(s) 1259, 1467
BstV1I GCAGC 6 cut(s) 139, 292, 320, 805, 1178, 1183
BstXI CCANNNNNNTGG 2 cut(s) 435, 1424
Bsu36I CCTNAGG 1 cut(s) 942
BsuRI GGCC 2 cut(s) 288, 1389
BtsCI GGATG 6 cut(s) 386, 722, 734, 1055, 1102, 1198
BtsIMutI CAGTG 5 cut(s) 34, 264, 433, 631, 712
BtuMI TCGCGA 1 cut(s) 1259
BveI ACCTGC 1 cut(s) 1225
Cac8I GCNNGC 3 cut(s) 1438, 1442, 1446
CaiI CAGNNNCTG 3 cut(s) 67, 579, 794
CfoI GCGC 1 cut(s) 1467
Cfr10I RCCGGY 1 cut(s) 518
Cfr13I GGNCC 4 cut(s) 438, 445, 672, 1394
CseI GACGC 2 cut(s) 158, 1240
Csp6I GTAC 2 cut(s) 187, 347
CviAII CATG 2 cut(s) 776, 1064
CviQI GTAC 2 cut(s) 187, 347
DdeI CTNAG 2 cut(s) 942, 1092
DpnI GATC 5 cut(s) 426, 1149, 1256, 1487, 1496
DpnII GATC 5 cut(s) 424, 1147, 1254, 1485, 1494
DrdI GACNNNNNNGTC 1 cut(s) 896
DseDI GACNNNNNNGTC 1 cut(s) 896
EaeI YGGCCR 1 cut(s) 286
Eco130I CCWWGG 3 cut(s) 441, 1351, 1417
Eco47I GGWCC 4 cut(s) 438, 445, 672, 1394
Eco57I CTGAAG 1 cut(s) 315
Eco72I CACGTG 1 cut(s) 196
Eco81I CCTNAGG 1 cut(s) 942
EcoO109I RGGNCCY 1 cut(s) 1394
EcoRII CCWGG 5 cut(s) 572, 655, 1045, 1110, 1266
EcoT14I CCWWGG 3 cut(s) 441, 1351, 1417
ErhI CCWWGG 3 cut(s) 441, 1351, 1417
FaeI CATG 2 cut(s) 779, 1067
FalI AAGNNNNNCTT 2 cut(s) 528, 560
FaqI GGGAC 4 cut(s) 55, 389, 825, 1380
FatI CATG 2 cut(s) 775, 1063
FauI CCCGC 2 cut(s) 1449, 1453
FauNDI CATATG 1 cut(s) 373
FbaI TGATCA 1 cut(s) 1147
FokI GGATG 6 cut(s) 393, 729, 741, 1062, 1109, 1205
FspBI CTAG 3 cut(s) 584, 1352, 1385
GlaI GCGC 1 cut(s) 1466
GsaI CCCAGC 2 cut(s) 399, 1365
GsuI CTGGAG 2 cut(s) 579, 726
HaeIII GGCC 2 cut(s) 288, 1389
HapII CCGG 2 cut(s) 519, 1398
HgaI GACGC 2 cut(s) 158, 1240
HhaI GCGC 1 cut(s) 1467
Hin1II CATG 2 cut(s) 779, 1067
Hin6I GCGC 1 cut(s) 1465
HinP1I GCGC 1 cut(s) 1465
HincII GTYRAC 1 cut(s) 256
HindII GTYRAC 1 cut(s) 256
HinfI GANTC 8 cut(s) 402, 791, 857, 878, 921, 928, 1070, 1305
HpaII CCGG 2 cut(s) 519, 1398
HphI GGTGA 3 cut(s) 45, 347, 523
Hpy166II GTNNAC 1 cut(s) 256
Hpy188I TCNGA 6 cut(s) 175, 477, 767, 994, 1485, 1499
Hpy188III TCNNGA 5 cut(s) 62, 119, 925, 1094, 1258
Hpy8I GTNNAC 1 cut(s) 256
Hpy99I CGWCG 2 cut(s) 1220, 1234
HpyAV CCTTC 3 cut(s) 104, 144, 371
HpyCH4III ACNGT 5 cut(s) 69, 351, 503, 626, 1220
HpyCH4IV ACGT 4 cut(s) 195, 216, 314, 701
HpyF10VI GCNNNNNNNGC 6 cut(s) 161, 305, 317, 752, 827, 1166
HpyF3I CTNAG 2 cut(s) 942, 1092
HpySE526I ACGT 4 cut(s) 195, 216, 314, 701
Hsp92II CATG 2 cut(s) 779, 1067
HspAI GCGC 1 cut(s) 1465
Ksp22I TGATCA 1 cut(s) 1147
Kzo9I GATC 5 cut(s) 424, 1147, 1254, 1485, 1494
LmnI GCTCC 5 cut(s) 745, 1183, 1433, 1462, 1486
Lsp1109I GCAGC 6 cut(s) 139, 292, 320, 805, 1178, 1183
LweI GCATC 3 cut(s) 59, 77, 1183
MaeI CTAG 3 cut(s) 584, 1352, 1385
MaeII ACGT 4 cut(s) 195, 216, 314, 701
MaeIII GTNAC 3 cut(s) 209, 709, 784
MalI GATC 5 cut(s) 426, 1149, 1256, 1487, 1496
MbiI CCGCTC 2 cut(s) 670, 1300
MboI GATC 5 cut(s) 424, 1147, 1254, 1485, 1494
MboII GAAGA 3 cut(s) 17, 678, 1463
MfeI CAATTG 1 cut(s) 735
MhlI GDGCHC 2 cut(s) 420, 1442
MlsI TGGCCA 1 cut(s) 288
MluCI AATT 8 cut(s) 17, 57, 169, 455, 735, 901, 915, 979
MluNI TGGCCA 1 cut(s) 288
MlyI GAGTC 3 cut(s) 411, 1064, 1299
MmeI TCCRAC 3 cut(s) 198, 539, 706
Mox20I TGGCCA 1 cut(s) 288
MroXI GAANNNNTTC 1 cut(s) 114
MscI TGGCCA 1 cut(s) 288
MseI TTAA 4 cut(s) 387, 621, 780, 1016
Msp20I TGGCCA 1 cut(s) 288
MspA1I CMGCKG 1 cut(s) 1478
MspI CCGG 2 cut(s) 519, 1398
MspR9I CCNGG 6 cut(s) 574, 657, 1047, 1112, 1268, 1398
MunI CAATTG 1 cut(s) 735
Mva1269I GAATGC 2 cut(s) 569, 950
MvaI CCWGG 5 cut(s) 574, 657, 1047, 1112, 1268
MvnI CGCG 2 cut(s) 1259, 1467
MwoI GCNNNNNNNGC 6 cut(s) 161, 305, 317, 752, 827, 1166
NciI CCSGG 1 cut(s) 1398
NdeI CATATG 1 cut(s) 373
NdeII GATC 5 cut(s) 424, 1147, 1254, 1485, 1494
NlaIII CATG 2 cut(s) 779, 1067
NlaIV GGNNCC 3 cut(s) 447, 1396, 1482
NmeAIII GCCGAG 1 cut(s) 1415
NmuCI GTSAC 2 cut(s) 209, 709
NruI TCGCGA 1 cut(s) 1259
PcsI WCGNNNNNNNCGW 1 cut(s) 222
PctI GAATGC 2 cut(s) 569, 950
PdmI GAANNNNTTC 1 cut(s) 114
PfeI GAWTC 5 cut(s) 791, 857, 878, 921, 928
PflMI CCANNNNNTGG 1 cut(s) 1052
PfoI TCCNGGA 2 cut(s) 655, 1396
PleI GAGTC 3 cut(s) 410, 1064, 1299
PmaCI CACGTG 1 cut(s) 196
PmlI CACGTG 1 cut(s) 196
PpsI GAGTC 3 cut(s) 410, 1064, 1299
Ppu21I YACGTR 2 cut(s) 196, 217
PpuMI RGGWCCY 1 cut(s) 1394
PshAI GACNNNNGTC 1 cut(s) 1235
PsiI TTATAA 1 cut(s) 1104
Psp1406I AACGTT 2 cut(s) 314, 701
Psp5II RGGWCCY 1 cut(s) 1394
Psp6I CCWGG 5 cut(s) 572, 655, 1045, 1110, 1266
PspCI CACGTG 1 cut(s) 196
PspFI CCCAGC 2 cut(s) 395, 1361
PspGI CCWGG 5 cut(s) 572, 655, 1045, 1110, 1266
PspN4I GGNNCC 3 cut(s) 447, 1396, 1482
PspPI GGNCC 4 cut(s) 438, 445, 672, 1394
PspPPI RGGWCCY 1 cut(s) 1394
PstI CTGCAG 3 cut(s) 310, 1168, 1201
PstNI CAGNNNCTG 3 cut(s) 67, 579, 794
RruI TCGCGA 1 cut(s) 1259
RsaI GTAC 2 cut(s) 188, 348
RsaNI GTAC 2 cut(s) 187, 347
SaqAI TTAA 4 cut(s) 387, 621, 780, 1016
Sau3AI GATC 5 cut(s) 424, 1147, 1254, 1485, 1494
Sau96I GGNCC 4 cut(s) 438, 445, 672, 1394
SchI GAGTC 3 cut(s) 411, 1064, 1299
ScrFI CCNGG 6 cut(s) 574, 657, 1047, 1112, 1268, 1398
SduI GDGCHC 2 cut(s) 420, 1442
SfaNI GCATC 3 cut(s) 59, 77, 1183
SfcI CTRYAG 3 cut(s) 306, 1164, 1197
SinI GGWCC 4 cut(s) 438, 445, 672, 1394
SmlI CTYRAG 1 cut(s) 545
SmoI CTYRAG 1 cut(s) 545
Sse9I AATT 8 cut(s) 17, 57, 169, 455, 735, 901, 915, 979
SspMI CTAG 3 cut(s) 584, 1352, 1385
StyD4I CCNGG 6 cut(s) 572, 655, 1045, 1110, 1266, 1396
StyI CCWWGG 3 cut(s) 441, 1351, 1417
TaaI ACNGT 5 cut(s) 69, 351, 503, 626, 1220
TaiI ACGT 4 cut(s) 198, 219, 317, 704
TaqI TCGA 2 cut(s) 1296, 1493
TasI AATT 8 cut(s) 17, 57, 169, 455, 735, 901, 915, 979
TatI WGTACW 2 cut(s) 186, 346
TauI GCSGC 5 cut(s) 570, 1229, 1303, 1346, 1481
TfiI GAWTC 5 cut(s) 791, 857, 878, 921, 928
Tru1I TTAA 4 cut(s) 387, 621, 780, 1016
Tru9I TTAA 4 cut(s) 387, 621, 780, 1016
TscAI CASTG 5 cut(s) 34, 271, 440, 631, 712
TseFI GTSAC 2 cut(s) 209, 709
TseI GCWGC 6 cut(s) 152, 305, 308, 818, 1166, 1196
Tsp45I GTSAC 2 cut(s) 209, 709
TspGWI ACGGA 1 cut(s) 258
TspRI CASTG 5 cut(s) 34, 271, 440, 631, 712
Van91I CCANNNNNTGG 1 cut(s) 1052
VpaK11BI GGWCC 4 cut(s) 438, 445, 672, 1394
XapI RAATTY 1 cut(s) 455
XcmI CCANNNNNNNNNTGG 2 cut(s) 1424, 1456
XmaJI CCTAGG 1 cut(s) 1351
XmnI GAANNNNTTC 1 cut(s) 114
XspI CTAG 3 cut(s) 584, 1352, 1385
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.