Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0011569

Physical Location & Seq

Genomic Coordinates Reverse (-)

38591124 .. 38595052

Gene Structure 3929 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0349100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGGCATCATCATCAAGAGCCACCGCCACCGCCCACGCCAACGGGCCCACAGCAAACGGCGACCACCACAGGCCCACGGCAAACCACAGCAGCGGCAGCCGGCACCAGCACTACTACCCCCCAACGACGCCGTATCGGTCCTCGTCCTCGTCGGCTTCGTTCAGAGGCTGCTGCTGCTGCCTCTTCCTGCTCTTCTCCCTCCTGGCGCTCCTGGTCCTGGCCGTCGTCCTCGTCATAATCCTGGCCGTGAAACCCAAGAAGCCGCAGTTCGATCTCCAACAAGTAGGAGTCCAGTACATGGGCATCAACTCGCCCAATCCCACCACCGACCCGAACCCGAACCCGGCCTCCTCCGCCTCTCTCTCCCTCAGCATTCGCCTGCTCTTCTCCGCCGAGAACCCCAACAAGGTCGGAATCAAGTACGGCGAGTCCAGGTTCACCGTCATGTACCGCGGCATCCCACTGGGCAAGGCCTCCGTCCCCGGCTTCTTCCAGCAGGCCCACAGCGTCAGGCAGGTCGTCGCCACCATCGCCGTCGATCGCGCCAATCTCATTCAGGCCGACGCTGCCGATTTAATCCGCGACGCCTCGCTCAACGACCGGGTCGAGCTCCGGGTCTTGGGTGACGTCGGCGCCAAGATCCGCGTCTTGAACATCGATTCTCCTGGCGTTCAGGTTTCCGTGGATTGTGCAATCGTTATAAGTCCAAGGAAGCAGTCTCTTACTTACAAGCAGTGTGGATTTGATGGATTGAGTGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006558 GO:0006559 GO:0006568 GO:0006569 GO:0006575 GO:0006576 GO:0006586 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008483 GO:0008652 GO:0009056 GO:0009058 GO:0009063 GO:0009072 GO:0009074 GO:0009308 GO:0009310 GO:0009987 GO:0016053 GO:0016054 GO:0016212 GO:0016740 GO:0016769 GO:0016829 GO:0016846 GO:0017144 GO:0019439 GO:0019752 GO:0031974 GO:0031981 GO:0034641 GO:0036137 GO:0042180 GO:0042402 GO:0042430 GO:0042436 GO:0042537 GO:0042737 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044281 GO:0044282 GO:0044283 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046218 GO:0046394 GO:0046395 GO:0046483 GO:0046700 GO:0046983 GO:0047312 GO:0047804 GO:0047945 GO:0070013 GO:0070189 GO:0070546 GO:0070548 GO:0071704 GO:0097052 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901566 GO:1901575 GO:1901576 GO:1901605 GO:1901606 GO:1902221 GO:1902222

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aminotran_1_2

Protein Analysis

253

Amino Acids

27.07

Weight (kDa)

9.45

Isoelectric Point (pI)

36.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LEA_2	PF03168	129 - 227	1.6e-11	Late embryogenesis abundant protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011569)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g39650 FvH4_5g39650 FvH4_5g39650 FvH4_5g39650
malus_domestica	MD11G1317900.v1.1
prunus_persica	Prupe.8G269100_v2.0.a1
pyrus_communis	pycom11g27710
rosa_chinensis	RchiOBHm_Chr7g0241961
rosa_laevigata	RLG00000000526
rosa_multiflora	Rmu_co8508251.1_g000001 Rmu_sc0003266.1_g000006
rosa_roxburghii	Rroxscaffold_3G00218430
rosa_rugosa	Rorug07G0349100 Rorug07G0349200 Rorug07G0349300.1 Rorug07G0349400
rosa_samantha	Rh7AG503300 Rh7BG474500 Rh7DG488900
rosa_wichuraiana	Rw7G042560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	701
AatII	GACGTC	1 cut(s)	630
Acc36I	ACCTGC	1 cut(s)	505
AccB1I	GGYRCC	2 cut(s)	102, 632
AccB7I	CCANNNNNTGG	1 cut(s)	298
AccII	CGCG	4 cut(s)	453, 543, 582, 645
AclWI	GGATC	1 cut(s)	634
AcoI	YGGCCR	2 cut(s)	219, 243
AcyI	GRCGYC	4 cut(s)	128, 585, 627, 633
AfaI	GTAC	3 cut(s)	296, 422, 449
AfiI	CCNNNNNNNGG	5 cut(s)	217, 298, 343, 406, 619
AgsI	TTSAA	1 cut(s)	652
AjnI	CCWGG	6 cut(s)	201, 210, 216, 240, 431, 664
AloI	GAACNNNNNNTCC	2 cut(s)	332, 364
AluBI	AGCT	1 cut(s)	610
AluI	AGCT	1 cut(s)	610
Alw21I	GWGCWC	1 cut(s)	612
Alw26I	GTCTC	1 cut(s)	723
AlwI	GGATC	1 cut(s)	634
AlwNI	CAGNNNCTG	1 cut(s)	168
AoxI	GGCC	8 cut(s)	44, 71, 219, 243, 345, 471, 498, 558
ApaI	GGGCCC	1 cut(s)	48
ApeKI	GCWGC	7 cut(s)	90, 96, 168, 171, 174, 177, 566
AspLEI	GCGC	3 cut(s)	208, 545, 635
AspS9I	GGNCC	6 cut(s)	44, 45, 72, 138, 214, 499
AsuC2I	CCSGG	4 cut(s)	344, 483, 602, 614
AsuHPI	GGTGA	2 cut(s)	430, 635
AvaII	GGWCC	2 cut(s)	138, 214
BaeGI	GKGCMC	1 cut(s)	48
BanI	GGYRCC	2 cut(s)	102, 632
BanII	GRGCYC	2 cut(s)	48, 612
Bbv12I	GWGCWC	1 cut(s)	612
BbvCI	CCTCAGC	1 cut(s)	368
BbvI	GCAGC	7 cut(s)	102, 108, 155, 158, 161, 164, 553
BccI	CCATC	2 cut(s)	536, 740
BceAI	ACGGC	7 cut(s)	73, 93, 115, 206, 230, 439, 518
BciT130I	CCWGG	6 cut(s)	203, 212, 218, 242, 433, 666
BcnI	CCSGG	4 cut(s)	344, 483, 602, 614
BcoDI	GTCTC	1 cut(s)	723
BfoI	RGCGCY	2 cut(s)	209, 636
BfuAI	ACCTGC	1 cut(s)	505
Bme18I	GGWCC	2 cut(s)	138, 214
BmgT120I	GGNCC	6 cut(s)	44, 45, 72, 138, 214, 499
BmiI	GGNNCC	3 cut(s)	46, 104, 634
BmrI	ACTGGG	1 cut(s)	473
BmsI	GCATC	3 cut(s)	14, 312, 465
BmuI	ACTGGG	1 cut(s)	473
Bpu10I	CCTNAGC	1 cut(s)	368
BpuMI	CCSGG	4 cut(s)	344, 483, 602, 614
Bsa29I	ATCGAT	1 cut(s)	657
BsaHI	GRCGYC	4 cut(s)	128, 585, 627, 633
BsaJI	CCNNGG	5 cut(s)	75, 451, 481, 681, 707
BsaXI	ACNNNNNCTCC	2 cut(s)	332, 362
Bsc4I	CCNNNNNNNGG	5 cut(s)	217, 298, 343, 406, 619
Bse118I	RCCGGY	1 cut(s)	99
Bse1I	ACTGG	2 cut(s)	292, 468
BseBI	CCWGG	6 cut(s)	203, 212, 218, 242, 433, 666
BseCI	ATCGAT	1 cut(s)	657
BseDI	CCNNGG	5 cut(s)	75, 451, 481, 681, 707
BseGI	GGATG	1 cut(s)	456
BseLI	CCNNNNNNNGG	5 cut(s)	217, 298, 343, 406, 619
BseMII	CTCAG	1 cut(s)	382
BseNI	ACTGG	2 cut(s)	292, 468
BseRI	GAGGAG	1 cut(s)	340
BseSI	GKGCMC	1 cut(s)	48
BseXI	GCAGC	7 cut(s)	102, 108, 155, 158, 161, 164, 553
Bsh1236I	CGCG	4 cut(s)	453, 543, 582, 645
Bsh1285I	CGRYCG	2 cut(s)	541, 601
BshFI	GGCC	8 cut(s)	46, 73, 221, 245, 347, 473, 500, 560
BshNI	GGYRCC	2 cut(s)	102, 632
BshVI	ATCGAT	1 cut(s)	657
BsiEI	CGRYCG	2 cut(s)	541, 601
BsiHKAI	GWGCWC	1 cut(s)	612
BsiSI	CCGG	5 cut(s)	100, 344, 483, 601, 613
BslFI	GGGAC	1 cut(s)	464
BslI	CCNNNNNNNGG	5 cut(s)	217, 298, 343, 406, 619
BsmAI	GTCTC	1 cut(s)	723
BsmFI	GGGAC	1 cut(s)	464
BsmI	GAATGC	1 cut(s)	372
BsnI	GGCC	8 cut(s)	46, 73, 221, 245, 347, 473, 500, 560
Bsp120I	GGGCCC	1 cut(s)	44
Bsp1286I	GDGCHC	2 cut(s)	48, 612
Bsp143I	GATC	3 cut(s)	271, 538, 639
BspANI	GGCC	8 cut(s)	46, 73, 221, 245, 347, 473, 500, 560
BspCNI	CTCAG	1 cut(s)	381
BspDI	ATCGAT	1 cut(s)	657
BspFNI	CGCG	4 cut(s)	453, 543, 582, 645
BspLI	GGNNCC	3 cut(s)	46, 104, 634
BspMI	ACCTGC	1 cut(s)	505
BspPI	GGATC	1 cut(s)	634
BspQI	GCTCTTC	2 cut(s)	197, 389
BspT107I	GGYRCC	2 cut(s)	102, 632
BsrFI	RCCGGY	1 cut(s)	99
BsrI	ACTGG	2 cut(s)	292, 468
BssAI	RCCGGY	1 cut(s)	99
BssECI	CCNNGG	5 cut(s)	75, 451, 481, 681, 707
BssMI	GATC	3 cut(s)	271, 538, 639
BssNI	GRCGYC	4 cut(s)	128, 585, 627, 633
BssT1I	CCWWGG	1 cut(s)	707
Bst2UI	CCWGG	6 cut(s)	203, 212, 218, 242, 433, 666
Bst4CI	ACNGT	1 cut(s)	442
Bst6I	CTCTTC	3 cut(s)	188, 197, 389
BstACI	GRCGYC	4 cut(s)	128, 585, 627, 633
BstC8I	GCNNGC	3 cut(s)	101, 380, 498
BstDEI	CTNAG	1 cut(s)	368
BstDSI	CCRYGG	3 cut(s)	75, 451, 681
BstF5I	GGATG	1 cut(s)	456
BstFNI	CGCG	4 cut(s)	453, 543, 582, 645
BstH2I	RGCGCY	2 cut(s)	209, 636
BstHHI	GCGC	3 cut(s)	208, 545, 635
BstKTI	GATC	3 cut(s)	274, 541, 642
BstMAI	GTCTC	1 cut(s)	723
BstMBI	GATC	3 cut(s)	271, 538, 639
BstMCI	CGRYCG	2 cut(s)	541, 601
BstMWI	GCNNNNNNNGC	6 cut(s)	96, 174, 177, 353, 530, 566
BstNI	CCWGG	6 cut(s)	203, 212, 218, 242, 433, 666
BstSLI	GKGCMC	1 cut(s)	48
BstUI	CGCG	4 cut(s)	453, 543, 582, 645
BstV1I	GCAGC	7 cut(s)	102, 108, 155, 158, 161, 164, 553
BstX2I	RGATCY	1 cut(s)	639
BstYI	RGATCY	1 cut(s)	639
Bsu15I	ATCGAT	1 cut(s)	657
BsuRI	GGCC	8 cut(s)	46, 73, 221, 245, 347, 473, 500, 560
BsuTUI	ATCGAT	1 cut(s)	657
BtgI	CCRYGG	3 cut(s)	75, 451, 681
BtgZI	GCGATG	1 cut(s)	514
BtsCI	GGATG	1 cut(s)	456
BtsI	GCAGTG	1 cut(s)	740
BtsIMutI	CAGTG	2 cut(s)	461, 740
BveI	ACCTGC	1 cut(s)	505
Cac8I	GCNNGC	3 cut(s)	101, 380, 498
CaiI	CAGNNNCTG	1 cut(s)	168
CfoI	GCGC	3 cut(s)	208, 545, 635
Cfr10I	RCCGGY	1 cut(s)	99
Cfr13I	GGNCC	6 cut(s)	44, 45, 72, 138, 214, 499
Cfr42I	CCGCGG	1 cut(s)	454
ClaI	ATCGAT	1 cut(s)	657
CseI	GACGC	5 cut(s)	136, 496, 572, 593, 634
Csp6I	GTAC	3 cut(s)	295, 421, 448
CspCI	CAANNNNNGTGG	2 cut(s)	718, 753
CviAII	CATG	2 cut(s)	298, 445
CviQI	GTAC	3 cut(s)	295, 421, 448
DdeI	CTNAG	1 cut(s)	368
DinI	GGCGCC	1 cut(s)	634
DpnI	GATC	3 cut(s)	273, 540, 641
DpnII	GATC	3 cut(s)	271, 538, 639
EaeI	YGGCCR	2 cut(s)	219, 243
Eam1104I	CTCTTC	3 cut(s)	188, 197, 389
EarI	CTCTTC	3 cut(s)	188, 197, 389
EciI	GGCGGA	2 cut(s)	343, 379
Ecl136II	GAGCTC	1 cut(s)	610
Eco130I	CCWWGG	1 cut(s)	707
Eco147I	AGGCCT	1 cut(s)	473
Eco24I	GRGCYC	2 cut(s)	48, 612
Eco47I	GGWCC	2 cut(s)	138, 214
Eco53kI	GAGCTC	1 cut(s)	610
EcoICRI	GAGCTC	1 cut(s)	610
EcoRII	CCWGG	6 cut(s)	201, 210, 216, 240, 431, 664
EcoT14I	CCWWGG	1 cut(s)	707
EcoT38I	GRGCYC	2 cut(s)	48, 612
EgeI	GGCGCC	1 cut(s)	634
EheI	GGCGCC	1 cut(s)	634
ErhI	CCWWGG	1 cut(s)	707
FaeI	CATG	2 cut(s)	301, 448
FaiI	YATR	4 cut(s)	236, 299, 446, 701
FaqI	GGGAC	1 cut(s)	464
FatI	CATG	2 cut(s)	297, 444
FokI	GGATG	1 cut(s)	443
FriOI	GRGCYC	2 cut(s)	48, 612
GlaI	GCGC	3 cut(s)	207, 544, 634
HaeII	RGCGCY	2 cut(s)	209, 636
HaeIII	GGCC	8 cut(s)	46, 73, 221, 245, 347, 473, 500, 560
HapII	CCGG	5 cut(s)	100, 344, 483, 601, 613
HgaI	GACGC	5 cut(s)	136, 496, 572, 593, 634
HhaI	GCGC	3 cut(s)	208, 545, 635
Hin1I	GRCGYC	4 cut(s)	128, 585, 627, 633
Hin1II	CATG	2 cut(s)	301, 448
Hin6I	GCGC	3 cut(s)	206, 543, 633
HinP1I	GCGC	3 cut(s)	206, 543, 633
HinfI	GANTC	4 cut(s)	288, 414, 428, 659
HpaII	CCGG	5 cut(s)	100, 344, 483, 601, 613
HphI	GGTGA	2 cut(s)	430, 635
Hpy166II	GTNNAC	1 cut(s)	438
Hpy188I	TCNGA	2 cut(s)	164, 413
Hpy188III	TCNNGA	2 cut(s)	15, 649
Hpy8I	GTNNAC	1 cut(s)	438
Hpy99I	CGWCG	8 cut(s)	130, 154, 227, 524, 539, 566, 587, 632
HpyCH4III	ACNGT	1 cut(s)	442
HpyCH4IV	ACGT	1 cut(s)	627
HpyCH4V	TGCA	1 cut(s)	692
HpyF10VI	GCNNNNNNNGC	6 cut(s)	96, 174, 177, 353, 530, 566
HpyF3I	CTNAG	1 cut(s)	368
HpySE526I	ACGT	1 cut(s)	627
Hsp92I	GRCGYC	4 cut(s)	128, 585, 627, 633
Hsp92II	CATG	2 cut(s)	301, 448
HspAI	GCGC	3 cut(s)	206, 543, 633
KasI	GGCGCC	1 cut(s)	632
KroI	GCCGGC	1 cut(s)	99
KroNI	GCCGGC	1 cut(s)	101
KspI	CCGCGG	1 cut(s)	454
Kzo9I	GATC	3 cut(s)	271, 538, 639
LguI	GCTCTTC	2 cut(s)	197, 389
LmnI	GCTCC	2 cut(s)	213, 615
Lsp1109I	GCAGC	7 cut(s)	102, 108, 155, 158, 161, 164, 553
LweI	GCATC	3 cut(s)	14, 312, 465
MaeII	ACGT	1 cut(s)	627
MaeIII	GTNAC	1 cut(s)	623
MalI	GATC	3 cut(s)	273, 540, 641
MboI	GATC	3 cut(s)	271, 538, 639
MboII	GAAGA	4 cut(s)	175, 184, 376, 481
MflI	RGATCY	1 cut(s)	639
MhlI	GDGCHC	2 cut(s)	48, 612
Mly113I	GGCGCC	1 cut(s)	633
MlyI	GAGTC	2 cut(s)	297, 437
MmeI	TCCRAC	2 cut(s)	301, 391
MroNI	GCCGGC	1 cut(s)	99
MseI	TTAA	1 cut(s)	575
MslI	CAYNNNNRTG	1 cut(s)	443
MspA1I	CMGCKG	2 cut(s)	93, 453
MspI	CCGG	5 cut(s)	100, 344, 483, 601, 613
Mva1269I	GAATGC	1 cut(s)	372
MvaI	CCWGG	6 cut(s)	203, 212, 218, 242, 433, 666
MvnI	CGCG	4 cut(s)	453, 543, 582, 645
MwoI	GCNNNNNNNGC	6 cut(s)	96, 174, 177, 353, 530, 566
NaeI	GCCGGC	1 cut(s)	101
NarI	GGCGCC	1 cut(s)	633
NciI	CCSGG	4 cut(s)	344, 483, 602, 614
NdeII	GATC	3 cut(s)	271, 538, 639
NgoMIV	GCCGGC	1 cut(s)	99
NlaIII	CATG	2 cut(s)	301, 448
NlaIV	GGNNCC	3 cut(s)	46, 104, 634
NmeAIII	GCCGAG	1 cut(s)	418
NmuCI	GTSAC	1 cut(s)	623
PceI	AGGCCT	1 cut(s)	473
PciSI	GCTCTTC	2 cut(s)	197, 389
PcsI	WCGNNNNNNNCGW	2 cut(s)	155, 603
PctI	GAATGC	1 cut(s)	372
PdiI	GCCGGC	1 cut(s)	101
PfeI	GAWTC	2 cut(s)	414, 659
PflFI	GACNNNGTC	1 cut(s)	602
PflMI	CCANNNNNTGG	1 cut(s)	298
Ple19I	CGATCG	1 cut(s)	541
PleI	GAGTC	2 cut(s)	296, 436
PluTI	GGCGCC	1 cut(s)	636
PpsI	GAGTC	2 cut(s)	296, 436
PsiI	TTATAA	1 cut(s)	701
Psp124BI	GAGCTC	1 cut(s)	612
Psp6I	CCWGG	6 cut(s)	201, 210, 216, 240, 431, 664
PspGI	CCWGG	6 cut(s)	201, 210, 216, 240, 431, 664
PspN4I	GGNNCC	3 cut(s)	46, 104, 634
PspOMI	GGGCCC	1 cut(s)	44
PspPI	GGNCC	6 cut(s)	44, 45, 72, 138, 214, 499
PstNI	CAGNNNCTG	1 cut(s)	168
PsuI	RGATCY	1 cut(s)	639
PsyI	GACNNNGTC	1 cut(s)	602
PvuI	CGATCG	1 cut(s)	541
RsaI	GTAC	3 cut(s)	296, 422, 449
RsaNI	GTAC	3 cut(s)	295, 421, 448
RseI	CAYNNNNRTG	1 cut(s)	443
SacI	GAGCTC	1 cut(s)	612
SacII	CCGCGG	1 cut(s)	454
SapI	GCTCTTC	2 cut(s)	197, 389
SaqAI	TTAA	1 cut(s)	575
Sau3AI	GATC	3 cut(s)	271, 538, 639
Sau96I	GGNCC	6 cut(s)	44, 45, 72, 138, 214, 499
SchI	GAGTC	2 cut(s)	297, 437
SduI	GDGCHC	2 cut(s)	48, 612
SetI	ASST	6 cut(s)	411, 437, 519, 612, 630, 678
SfaNI	GCATC	3 cut(s)	14, 312, 465
SfoI	GGCGCC	1 cut(s)	634
Sfr303I	CCGCGG	1 cut(s)	454
SgrBI	CCGCGG	1 cut(s)	454
SinI	GGWCC	2 cut(s)	138, 214
SmiMI	CAYNNNNRTG	1 cut(s)	443
SseBI	AGGCCT	1 cut(s)	473
SspDI	GGCGCC	1 cut(s)	632
SstI	GAGCTC	1 cut(s)	612
StuI	AGGCCT	1 cut(s)	473
StyI	CCWWGG	1 cut(s)	707
TaaI	ACNGT	1 cut(s)	442
TaiI	ACGT	1 cut(s)	630
TaqI	TCGA	4 cut(s)	270, 537, 606, 657
TaqII	GACCGA	1 cut(s)	126
TatI	WGTACW	1 cut(s)	294
TauI	GCSGC	3 cut(s)	96, 265, 456
TfiI	GAWTC	2 cut(s)	414, 659
Tru1I	TTAA	1 cut(s)	575
Tru9I	TTAA	1 cut(s)	575
TscAI	CASTG	2 cut(s)	468, 740
TseFI	GTSAC	1 cut(s)	623
TseI	GCWGC	7 cut(s)	90, 96, 168, 171, 174, 177, 566
Tsp45I	GTSAC	1 cut(s)	623
TspGWI	ACGGA	2 cut(s)	466, 670
TspRI	CASTG	2 cut(s)	468, 740
Tth111I	GACNNNGTC	1 cut(s)	602
Van91I	CCANNNNNTGG	1 cut(s)	298
VpaK11BI	GGWCC	2 cut(s)	138, 214
ZraI	GACGTC	1 cut(s)	628

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.