Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0011569

Physical Location & Seq

Genomic Coordinates Reverse (-)

42941024 .. 42945514

Gene Structure 4491 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1317900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1212 bp

ATGGAGGACAAGTTATCCATCGTGGCAAAGAGTATTGCACCGTCACCAATTCAGGAACTGTCCCATCTCGCCCGGAGGTGCAACGCCATCAACCTCGCCGAAGGCTTCCCAGACTTCCCTGCACCTTCCCATATCAAACACGCTGCCATCTCTGCCATTCATTCCGACTTCAATCAGTACAGGCATGTGCAAGGAATATGTGACCACCTGGCAAACATAATGAAGCAGATGCATGGATTGGATGTCAACCCTCTTACTGATATGGCTATTTGCTGCGGCCAATCTGAGGCCCTTGCAGCGGCTGCCTTTGCAATAATAGACAAGGGCGATGAAGTTATTCTGTTTGACCCTTGCTATGAAACATATGAAGGATGTATTAAGATGGCTGGGGGAGTCTCAGTATATGTGCCTCTTGACCCACCTCACTGGACCTTGGACCCTAACAGATTCATCAACGCTTTTAATGAGAGAACAAAAGCTCTCGTACTCAACAGCCCTCACAATCCAACCGGCAAAGTTTTCACTAAAGATGAACTTGAGATTATTGCTGAAGAATGTCGCGCCAGGAATTGCCTAGCTATAACAGATGAAGTATATGAGCATATAACCTTCAACAATGCAAAGCATATATCCCTTGCCTCACTTCCAGGGATGAAAGAGCGGACTATTATTACGTCTTCCTTATCTAAAACGTTCAGTGTAACAGGTTGGAGGGTTGGATGGGCAATAGCTCCAGCTTTCATTGCCTCTGCAATCAGAAACATTCATGCTAAACTTACAGATTCTGCTCCAGCACCTTTCCAAGAAGCTGCCTTAATTGCATTGGGAAGCCCCCCCGAATACTTTGAATCCTTGAGAAGTGATTATGAATCAAGGCGAGACTACATTGTCAATTTGCTTGCCAGGATCGGGTTTAAGATTCAATTCAAGCCTCAGGGTGCAGTCTTTTTATTTGCTGAACTACCTGAAAATTGCCAACTTTCTGATGTAGATTATGTCAAAATGTTAATACAGCAAGCGGGGATAGTGGCTGTGCCAGGATGTGGATTTTTTCATGCAGATTTATCACTGGAGAAATTATCTCAGGAAGGTTACTGCTATCGGGGGAGATACATTAGGTTTGCATTCTGTAAAAGTGATCAGACTTTGGCTTCTGCTGCCAAAAAACTTGGACAGCTTTCGGATGCTGCAGGGTGTCTCAATCTAAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006558 GO:0006559 GO:0006568 GO:0006569 GO:0006575 GO:0006576 GO:0006586 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008483 GO:0008652 GO:0009056 GO:0009058 GO:0009063 GO:0009072 GO:0009074 GO:0009308 GO:0009310 GO:0009987 GO:0016053 GO:0016054 GO:0016212 GO:0016740 GO:0016769 GO:0016829 GO:0016846 GO:0017144 GO:0019439 GO:0019752 GO:0031974 GO:0031981 GO:0034641 GO:0036137 GO:0042180 GO:0042402 GO:0042430 GO:0042436 GO:0042537 GO:0042737 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044281 GO:0044282 GO:0044283 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046218 GO:0046394 GO:0046395 GO:0046483 GO:0046700 GO:0046983 GO:0047312 GO:0047804 GO:0047945 GO:0070013 GO:0070189 GO:0070546 GO:0070548 GO:0071704 GO:0097052 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901566 GO:1901575 GO:1901576 GO:1901605 GO:1901606 GO:1902221 GO:1902222

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aminotran_1_2

Protein Analysis

404

Amino Acids

44.41

Weight (kDa)

6.12

Isoelectric Point (pI)

41.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aminotran_1_2	PF00155	30 - 348	1.6e-56	Aminotransferase class I and II
Cys_Met_Meta_PP	PF01053	88 - 199	7.7e-06	Cys/Met metabolism PLP-dependent enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011569)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g39650 FvH4_5g39650 FvH4_5g39650 FvH4_5g39650
malus_domestica	MD11G1317900.v1.1
prunus_persica	Prupe.8G269100_v2.0.a1
pyrus_communis	pycom11g27710
rosa_chinensis	RchiOBHm_Chr7g0241961
rosa_laevigata	RLG00000000526
rosa_multiflora	Rmu_co8508251.1_g000001 Rmu_sc0003266.1_g000006
rosa_roxburghii	Rroxscaffold_3G00218430
rosa_rugosa	Rorug07G0349100 Rorug07G0349200 Rorug07G0349300.1 Rorug07G0349400
rosa_samantha	Rh7AG503300 Rh7BG474500 Rh7DG488900
rosa_wichuraiana	Rw7G042560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	887
AccB7I	CCANNNNNTGG	1 cut(s)	1043
AccBSI	CCGCTC	1 cut(s)	661
AccII	CGCG	1 cut(s)	561
AciI	CCGC	4 cut(s)	276, 299, 661, 1019
AclI	AACGTT	1 cut(s)	692
AclWI	GGATC	1 cut(s)	914
AcoI	YGGCCR	1 cut(s)	277
AcuI	CTGAAG	1 cut(s)	570
AfaI	GTAC	2 cut(s)	179, 486
AfiI	CCNNNNNNNGG	4 cut(s)	286, 298, 909, 1043
AgsI	TTSAA	5 cut(s)	172, 613, 848, 923, 928
AjnI	CCWGG	5 cut(s)	207, 563, 646, 902, 1036
AluBI	AGCT	6 cut(s)	479, 578, 731, 737, 809, 1177
AluI	AGCT	6 cut(s)	479, 578, 731, 737, 809, 1177
Alw26I	GTCTC	3 cut(s)	400, 873, 1202
AlwI	GGATC	1 cut(s)	914
AlwNI	CAGNNNCTG	3 cut(s)	58, 302, 785
AoxI	GGCC	2 cut(s)	277, 288
ApeKI	GCWGC	7 cut(s)	143, 273, 296, 302, 809, 1157, 1187
Asp700I	GAANNNNTTC	1 cut(s)	336
AspLEI	GCGC	1 cut(s)	563
AspS9I	GGNCC	3 cut(s)	289, 429, 436
AsuC2I	CCSGG	1 cut(s)	73
AsuHPI	GGTGA	1 cut(s)	36
AvaII	GGWCC	2 cut(s)	429, 436
AxyI	CCTNAGG	1 cut(s)	933
BbsI	GAAGAC	1 cut(s)	669
BbvI	GCAGC	7 cut(s)	130, 260, 289, 308, 796, 1144, 1174
BccI	CCATC	6 cut(s)	26, 72, 95, 155, 376, 714
BciT130I	CCWGG	5 cut(s)	209, 565, 648, 904, 1038
BclI	TGATCA	1 cut(s)	1138
BcnI	CCSGG	1 cut(s)	73
BcoDI	GTCTC	3 cut(s)	400, 873, 1202
BfaI	CTAG	1 cut(s)	575
BfmI	CTRYAG	1 cut(s)	1188
BisI	GCNGC	9 cut(s)	144, 274, 277, 297, 300, 303, 810, 1158, 1188
BlsI	GCNGC	9 cut(s)	145, 275, 278, 298, 301, 304, 811, 1159, 1189
Bme1390I	CCNGG	6 cut(s)	73, 209, 565, 648, 904, 1038
Bme18I	GGWCC	2 cut(s)	429, 436
BmgT120I	GGNCC	3 cut(s)	289, 429, 436
BmiI	GGNNCC	1 cut(s)	438
BmrFI	CCNGG	6 cut(s)	73, 209, 565, 648, 904, 1038
BmsI	GCATC	2 cut(s)	219, 1174
BpiI	GAAGAC	1 cut(s)	669
BpmI	CTGGAG	3 cut(s)	717, 774, 1091
BpuEI	CTTGAG	2 cut(s)	557, 874
BpuMI	CCSGG	1 cut(s)	73
BsaJI	CCNNGG	2 cut(s)	432, 647
BsaXI	ACNNNNNCTCC	3 cut(s)	26, 384, 414
Bsc4I	CCNNNNNNNGG	4 cut(s)	286, 298, 909, 1043
Bse118I	RCCGGY	1 cut(s)	509
Bse1I	ACTGG	2 cut(s)	431, 1074
Bse21I	CCTNAGG	1 cut(s)	933
Bse3DI	GCAATG	1 cut(s)	741
BseBI	CCWGG	5 cut(s)	209, 565, 648, 904, 1038
BseDI	CCNNGG	2 cut(s)	432, 647
BseGI	GGATG	6 cut(s)	247, 377, 657, 725, 1046, 1189
BseLI	CCNNNNNNNGG	4 cut(s)	286, 298, 909, 1043
BseMI	GCAATG	1 cut(s)	741
BseMII	CTCAG	4 cut(s)	276, 411, 947, 1097
BseNI	ACTGG	2 cut(s)	431, 1074
BseXI	GCAGC	7 cut(s)	130, 260, 289, 308, 796, 1144, 1174
BseYI	CCCAGC	1 cut(s)	386
BsgI	GTGCAG	2 cut(s)	105, 960
Bsh1236I	CGCG	1 cut(s)	561
BshFI	GGCC	2 cut(s)	279, 290
BsiSI	CCGG	2 cut(s)	73, 510
BslFI	GGGAC	1 cut(s)	46
BslI	CCNNNNNNNGG	4 cut(s)	286, 298, 909, 1043
BsmAI	GTCTC	3 cut(s)	400, 873, 1202
BsmFI	GGGAC	1 cut(s)	46
BsmI	GAATGC	1 cut(s)	1124
BsnI	GGCC	2 cut(s)	279, 290
Bsp143I	GATC	2 cut(s)	906, 1138
BspACI	CCGC	4 cut(s)	276, 299, 661, 1019
BspANI	GGCC	2 cut(s)	279, 290
BspCNI	CTCAG	4 cut(s)	277, 410, 946, 1096
BspFNI	CGCG	1 cut(s)	561
BspLI	GGNNCC	1 cut(s)	438
BspMAI	CTGCAG	1 cut(s)	1192
BspPI	GGATC	1 cut(s)	914
BsrBI	CCGCTC	1 cut(s)	661
BsrDI	GCAATG	1 cut(s)	741
BsrFI	RCCGGY	1 cut(s)	509
BsrI	ACTGG	2 cut(s)	431, 1074
BssAI	RCCGGY	1 cut(s)	509
BssECI	CCNNGG	2 cut(s)	432, 647
BssMI	GATC	2 cut(s)	906, 1138
BssT1I	CCWWGG	1 cut(s)	432
Bst2UI	CCWGG	5 cut(s)	209, 565, 648, 904, 1038
Bst4CI	ACNGT	2 cut(s)	42, 60
BstAPI	GCANNNNNTGC	1 cut(s)	302
BstC8I	GCNNGC	2 cut(s)	900, 1017
BstDEI	CTNAG	5 cut(s)	285, 397, 933, 1083, 1205
BstF5I	GGATG	6 cut(s)	247, 377, 657, 725, 1046, 1189
BstFNI	CGCG	1 cut(s)	561
BstHHI	GCGC	1 cut(s)	563
BstKTI	GATC	2 cut(s)	909, 1141
BstMAI	GTCTC	3 cut(s)	400, 873, 1202
BstMBI	GATC	2 cut(s)	906, 1138
BstMWI	GCNNNNNNNGC	7 cut(s)	152, 296, 302, 308, 743, 818, 1157
BstNI	CCWGG	5 cut(s)	209, 565, 648, 904, 1038
BstNSI	RCATGY	1 cut(s)	188
BstSCI	CCNGG	6 cut(s)	71, 207, 563, 646, 902, 1036
BstSFI	CTRYAG	1 cut(s)	1188
BstUI	CGCG	1 cut(s)	561
BstV1I	GCAGC	7 cut(s)	130, 260, 289, 308, 796, 1144, 1174
BstV2I	GAAGAC	1 cut(s)	669
BstXI	CCANNNNNNTGG	1 cut(s)	426
Bsu36I	CCTNAGG	1 cut(s)	933
BsuRI	GGCC	2 cut(s)	279, 290
BtgZI	GCGATG	1 cut(s)	342
BtsCI	GGATG	6 cut(s)	247, 377, 657, 725, 1046, 1189
BtsIMutI	CAGTG	3 cut(s)	424, 703, 1067
Cac8I	GCNNGC	2 cut(s)	900, 1017
CaiI	CAGNNNCTG	3 cut(s)	58, 302, 785
CfoI	GCGC	1 cut(s)	563
Cfr10I	RCCGGY	1 cut(s)	509
Cfr13I	GGNCC	3 cut(s)	289, 429, 436
Csp6I	GTAC	2 cut(s)	178, 485
CviAII	CATG	4 cut(s)	185, 233, 767, 1055
CviQI	GTAC	2 cut(s)	178, 485
DdeI	CTNAG	5 cut(s)	285, 397, 933, 1083, 1205
DpnI	GATC	2 cut(s)	908, 1140
DpnII	GATC	2 cut(s)	906, 1138
DrdI	GACNNNNNNGTC	1 cut(s)	887
DseDI	GACNNNNNNGTC	1 cut(s)	887
EaeI	YGGCCR	1 cut(s)	277
Eco130I	CCWWGG	1 cut(s)	432
Eco47I	GGWCC	2 cut(s)	429, 436
Eco57I	CTGAAG	1 cut(s)	570
Eco81I	CCTNAGG	1 cut(s)	933
EcoO109I	RGGNCCY	1 cut(s)	289
EcoRII	CCWGG	5 cut(s)	207, 563, 646, 902, 1036
EcoT14I	CCWWGG	1 cut(s)	432
EcoT22I	ATGCAT	1 cut(s)	234
ErhI	CCWWGG	1 cut(s)	432
FaeI	CATG	4 cut(s)	188, 236, 770, 1058
FalI	AAGNNNNNCTT	2 cut(s)	519, 551
FaqI	GGGAC	1 cut(s)	46
FatI	CATG	4 cut(s)	184, 232, 766, 1054
FauI	CCCGC	1 cut(s)	1012
FauNDI	CATATG	1 cut(s)	364
FbaI	TGATCA	1 cut(s)	1138
Fnu4HI	GCNGC	9 cut(s)	144, 274, 277, 297, 300, 303, 810, 1158, 1188
FokI	GGATG	6 cut(s)	254, 384, 664, 732, 1053, 1196
Fsp4HI	GCNGC	9 cut(s)	144, 274, 277, 297, 300, 303, 810, 1158, 1188
FspBI	CTAG	1 cut(s)	575
GlaI	GCGC	1 cut(s)	562
GluI	GCNGC	9 cut(s)	144, 274, 277, 297, 300, 303, 810, 1158, 1188
GsaI	CCCAGC	1 cut(s)	390
GsuI	CTGGAG	3 cut(s)	717, 774, 1091
HaeIII	GGCC	2 cut(s)	279, 290
HapII	CCGG	2 cut(s)	73, 510
HhaI	GCGC	1 cut(s)	563
Hin1II	CATG	4 cut(s)	188, 236, 770, 1058
Hin6I	GCGC	1 cut(s)	561
HinP1I	GCGC	1 cut(s)	561
HincII	GTYRAC	1 cut(s)	247
HindII	GTYRAC	1 cut(s)	247
HinfI	GANTC	6 cut(s)	393, 447, 782, 848, 869, 919
HpaII	CCGG	2 cut(s)	73, 510
HphI	GGTGA	1 cut(s)	36
Hpy166II	GTNNAC	1 cut(s)	247
Hpy188I	TCNGA	6 cut(s)	166, 286, 758, 985, 1143, 1183
Hpy188III	TCNNGA	3 cut(s)	53, 413, 1085
Hpy8I	GTNNAC	1 cut(s)	247
HpyAV	CCTTC	5 cut(s)	95, 135, 362, 619, 1082
HpyCH4III	ACNGT	2 cut(s)	42, 60
HpyCH4IV	ACGT	2 cut(s)	674, 692
HpyF10VI	GCNNNNNNNGC	7 cut(s)	152, 296, 302, 308, 743, 818, 1157
HpyF3I	CTNAG	5 cut(s)	285, 397, 933, 1083, 1205
HpySE526I	ACGT	2 cut(s)	674, 692
Hsp92II	CATG	4 cut(s)	188, 236, 770, 1058
HspAI	GCGC	1 cut(s)	561
Ksp22I	TGATCA	1 cut(s)	1138
Kzo9I	GATC	2 cut(s)	906, 1138
LmnI	GCTCC	2 cut(s)	736, 793
Lsp1109I	GCAGC	7 cut(s)	130, 260, 289, 308, 796, 1144, 1174
LweI	GCATC	2 cut(s)	219, 1174
MaeI	CTAG	1 cut(s)	575
MaeII	ACGT	2 cut(s)	674, 692
MaeIII	GTNAC	4 cut(s)	42, 200, 700, 1091
MalI	GATC	2 cut(s)	908, 1140
MbiI	CCGCTC	1 cut(s)	661
MboI	GATC	2 cut(s)	906, 1138
MboII	GAAGA	2 cut(s)	563, 669
MluCI	AATT	7 cut(s)	48, 568, 816, 892, 923, 970, 1076
MlyI	GAGTC	1 cut(s)	402
MmeI	TCCRAC	4 cut(s)	189, 530, 689, 697
Mph1103I	ATGCAT	1 cut(s)	234
MroXI	GAANNNNTTC	1 cut(s)	336
MseI	TTAA	5 cut(s)	378, 462, 815, 915, 1007
MspA1I	CMGCKG	1 cut(s)	299
MspI	CCGG	2 cut(s)	73, 510
MspR9I	CCNGG	6 cut(s)	73, 209, 565, 648, 904, 1038
Mva1269I	GAATGC	1 cut(s)	1124
MvaI	CCWGG	5 cut(s)	209, 565, 648, 904, 1038
MvnI	CGCG	1 cut(s)	561
MwoI	GCNNNNNNNGC	7 cut(s)	152, 296, 302, 308, 743, 818, 1157
NciI	CCSGG	1 cut(s)	73
NdeI	CATATG	1 cut(s)	364
NdeII	GATC	2 cut(s)	906, 1138
NlaIII	CATG	4 cut(s)	188, 236, 770, 1058
NlaIV	GGNNCC	1 cut(s)	438
NmuCI	GTSAC	2 cut(s)	42, 200
NsiI	ATGCAT	1 cut(s)	234
NspI	RCATGY	1 cut(s)	188
PctI	GAATGC	1 cut(s)	1124
PdmI	GAANNNNTTC	1 cut(s)	336
PfeI	GAWTC	5 cut(s)	447, 782, 848, 869, 919
PflMI	CCANNNNNTGG	1 cut(s)	1043
PkrI	GCNGC	9 cut(s)	145, 275, 278, 298, 301, 304, 811, 1159, 1189
PleI	GAGTC	1 cut(s)	401
PpsI	GAGTC	1 cut(s)	401
Psp1406I	AACGTT	1 cut(s)	692
Psp6I	CCWGG	5 cut(s)	207, 563, 646, 902, 1036
PspFI	CCCAGC	1 cut(s)	386
PspGI	CCWGG	5 cut(s)	207, 563, 646, 902, 1036
PspN4I	GGNNCC	1 cut(s)	438
PspPI	GGNCC	3 cut(s)	289, 429, 436
PstI	CTGCAG	1 cut(s)	1192
PstNI	CAGNNNCTG	3 cut(s)	58, 302, 785
RsaI	GTAC	2 cut(s)	179, 486
RsaNI	GTAC	2 cut(s)	178, 485
SaqAI	TTAA	5 cut(s)	378, 462, 815, 915, 1007
SatI	GCNGC	9 cut(s)	144, 274, 277, 297, 300, 303, 810, 1158, 1188
Sau3AI	GATC	2 cut(s)	906, 1138
Sau96I	GGNCC	3 cut(s)	289, 429, 436
SchI	GAGTC	1 cut(s)	402
ScrFI	CCNGG	6 cut(s)	73, 209, 565, 648, 904, 1038
SfaNI	GCATC	2 cut(s)	219, 1174
SfcI	CTRYAG	1 cut(s)	1188
SinI	GGWCC	2 cut(s)	429, 436
SmlI	CTYRAG	2 cut(s)	536, 853
SmoI	CTYRAG	2 cut(s)	536, 853
Sse9I	AATT	7 cut(s)	48, 568, 816, 892, 923, 970, 1076
SsiI	CCGC	4 cut(s)	276, 299, 661, 1019
SspMI	CTAG	1 cut(s)	575
StyD4I	CCNGG	6 cut(s)	71, 207, 563, 646, 902, 1036
StyI	CCWWGG	1 cut(s)	432
TaaI	ACNGT	2 cut(s)	42, 60
TaiI	ACGT	2 cut(s)	677, 695
TasI	AATT	7 cut(s)	48, 568, 816, 892, 923, 970, 1076
TatI	WGTACW	1 cut(s)	177
TauI	GCSGC	2 cut(s)	279, 302
TfiI	GAWTC	5 cut(s)	447, 782, 848, 869, 919
Tru1I	TTAA	5 cut(s)	378, 462, 815, 915, 1007
Tru9I	TTAA	5 cut(s)	378, 462, 815, 915, 1007
TscAI	CASTG	3 cut(s)	431, 703, 1074
TseFI	GTSAC	2 cut(s)	42, 200
TseI	GCWGC	7 cut(s)	143, 273, 296, 302, 809, 1157, 1187
Tsp45I	GTSAC	2 cut(s)	42, 200
TspRI	CASTG	3 cut(s)	431, 703, 1074
Van91I	CCANNNNNTGG	1 cut(s)	1043
VpaK11BI	GGWCC	2 cut(s)	429, 436
XceI	RCATGY	1 cut(s)	188
XmnI	GAANNNNTTC	1 cut(s)	336
XspI	CTAG	1 cut(s)	575
Zsp2I	ATGCAT	1 cut(s)	234

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.