Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0011569

Physical Location & Seq

Genomic Coordinates Reverse (-)

66198342 .. 66201095

Gene Structure 2754 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G042560.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1221 bp

ATGGAAGAGAAACGAGACTTGTTATCCAGTGTAGCAAAGAGCATTACAGCATCACCAATTCAGGAACTCTCCCATCTTGCCCAGAGATGCAACGCCATCAACCTCGCCGAAGGTTTTCCAGACTTCCCTGCACCTTCCCACATCAAAGACGCTGCCATTTCCGCCATCAATTCCGACTTCAATCAGTACAGGCACGTGCAAGGAATATGTGACTACGTGGCAATCGTAATGAACCAAATGCATGGATTAGATGTCAACCCTCTCACTGATGTAGCTATTTGTTGTGGCCAAACTGAAGCATTTGCTGCAGCAACGTTTGCAATAATAGACAAGGGTGATGAAGTTGTACTGTTTGACCCTTGTTATGAAACATATGAAGGATGTATTAAGATGGCTGGGGGAGTCCCAGTATATGTGCCCCTTGATCCACCTCACTGGACCTTGGACCCTAACAAATTCGTCAAGTCTTTTTCTCGGAGAACAAAAGCCGTAATACTCAACAGTCCTCACAATCCAACCGGCAAAGTTTTCACCAAAGATGAACTTGAGATTATTGCTGGAGAATGCCGCACCAGGAACTGCCTAGCTATAACAGATGAAGTATATGAACATATAACATTTAACAGTGAGAAGCATATATCCCTTGCCTCGTTTCCAGGAATGAGAGAGCGGACCATCATCACATCTTCCTTATCTAAAACGTTCAGTGTCACAGGATGGAGGGTTGGATGGGCAATTGCTCCAGCTTTTATTGCCTCTGCAATCAGAAACATTCATGTTAAAGTTACAGATTCTGCACCAGCACCTTTCCAAGAAGCTGCCTTGACTGCTTTGAGAAGTCCCCCTGAATACTTTGAATCATTGAGAAGTGATTATGAATCAAGGAGAGACTACATCGTCAATTTACTTGCCAGAATTGGATTCAAGATTCATTTCAAGCCTCAGGGTGCATTCTTTTTATTTGCAGAGATACCTGAAAATTGCCCACTTTCTGATGTACAGTATGTTAGAAAGTTAATACAACAAGCAGGGGTAGTGGCTGTGCCAGGATGTGGATTTTTTCATGCAGACTCATCTGTGGAGAAACTTTCTCAGGATGGTTATAACTACCAGGATAGATACATCAGGTTTGCTTTCTGTAAAAGTGATCATACTTTGGCTTCTGCAGCAAAAAGACTTGGGGAGCTTTTGGATGCTGCAGGGTGTCTCAAGCTAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006558 GO:0006559 GO:0006568 GO:0006569 GO:0006575 GO:0006576 GO:0006586 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008483 GO:0008652 GO:0009056 GO:0009058 GO:0009063 GO:0009072 GO:0009074 GO:0009308 GO:0009310 GO:0009987 GO:0016053 GO:0016054 GO:0016212 GO:0016740 GO:0016769 GO:0016829 GO:0016846 GO:0017144 GO:0019439 GO:0019752 GO:0031974 GO:0031981 GO:0034641 GO:0036137 GO:0042180 GO:0042402 GO:0042430 GO:0042436 GO:0042537 GO:0042737 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044281 GO:0044282 GO:0044283 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046218 GO:0046394 GO:0046395 GO:0046483 GO:0046700 GO:0046983 GO:0047312 GO:0047804 GO:0047945 GO:0070013 GO:0070189 GO:0070546 GO:0070548 GO:0071704 GO:0097052 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901566 GO:1901575 GO:1901576 GO:1901605 GO:1901606 GO:1902221 GO:1902222

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aminotran_1_2

Protein Analysis

406

Amino Acids

44.97

Weight (kDa)

6.19

Isoelectric Point (pI)

43.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aminotran_1_2	PF00155	33 - 352	7.7e-57	Aminotransferase class I and II

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011569)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g39650 FvH4_5g39650 FvH4_5g39650 FvH4_5g39650
malus_domestica	MD11G1317900.v1.1
prunus_persica	Prupe.8G269100_v2.0.a1
pyrus_communis	pycom11g27710
rosa_chinensis	RchiOBHm_Chr7g0241961
rosa_laevigata	RLG00000000526
rosa_multiflora	Rmu_co8508251.1_g000001 Rmu_sc0003266.1_g000006
rosa_roxburghii	Rroxscaffold_3G00218430
rosa_rugosa	Rorug07G0349100 Rorug07G0349200 Rorug07G0349300.1 Rorug07G0349400
rosa_samantha	Rh7AG503300 Rh7BG474500 Rh7DG488900
rosa_wichuraiana	Rw7G042560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1104
AasI	GACNNNNNNGTC	1 cut(s)	896
AccB7I	CCANNNNNTGG	1 cut(s)	1052
AccBSI	CCGCTC	1 cut(s)	670
AciI	CCGC	3 cut(s)	162, 568, 670
AclI	AACGTT	2 cut(s)	314, 701
AclWI	GGATC	1 cut(s)	419
AcoI	YGGCCR	1 cut(s)	286
AcsI	RAATTY	1 cut(s)	455
AcuI	CTGAAG	1 cut(s)	315
AcvI	CACGTG	1 cut(s)	196
AfaI	GTAC	3 cut(s)	188, 348, 999
AfiI	CCNNNNNNNGG	1 cut(s)	1052
AgsI	TTSAA	4 cut(s)	181, 857, 925, 937
AjnI	CCWGG	4 cut(s)	572, 655, 1045, 1110
AluBI	AGCT	6 cut(s)	275, 587, 746, 818, 1186, 1213
AluI	AGCT	6 cut(s)	275, 587, 746, 818, 1186, 1213
Alw26I	GTCTC	3 cut(s)	9, 882, 1211
AlwI	GGATC	1 cut(s)	419
AlwNI	CAGNNNCTG	2 cut(s)	579, 794
AoxI	GGCC	1 cut(s)	286
ApeKI	GCWGC	6 cut(s)	152, 305, 308, 818, 1166, 1196
ApoI	RAATTY	1 cut(s)	455
Asp700I	GAANNNNTTC	1 cut(s)	114
AspS9I	GGNCC	3 cut(s)	438, 445, 672
AsuHPI	GGTGA	3 cut(s)	45, 347, 523
AvaII	GGWCC	3 cut(s)	438, 445, 672
AxyI	CCTNAGG	1 cut(s)	942
BaeGI	GKGCMC	1 cut(s)	420
BalI	TGGCCA	1 cut(s)	288
BbrPI	CACGTG	1 cut(s)	196
BbvI	GCAGC	6 cut(s)	139, 292, 320, 805, 1178, 1183
BccI	CCATC	8 cut(s)	81, 104, 173, 385, 683, 711, 723, 1091
BceAI	ACGGC	1 cut(s)	473
BciT130I	CCWGG	4 cut(s)	574, 657, 1047, 1112
BclI	TGATCA	1 cut(s)	1147
BcoDI	GTCTC	3 cut(s)	9, 882, 1211
BfaI	CTAG	1 cut(s)	584
BfmI	CTRYAG	3 cut(s)	306, 1164, 1197
BisI	GCNGC	7 cut(s)	153, 306, 309, 568, 819, 1167, 1197
BlsI	GCNGC	7 cut(s)	154, 307, 310, 569, 820, 1168, 1198
Bme1390I	CCNGG	4 cut(s)	574, 657, 1047, 1112
Bme18I	GGWCC	3 cut(s)	438, 445, 672
BmgT120I	GGNCC	3 cut(s)	438, 445, 672
BmiI	GGNNCC	1 cut(s)	447
BmrFI	CCNGG	4 cut(s)	574, 657, 1047, 1112
BmrI	ACTGGG	1 cut(s)	401
BmsI	GCATC	3 cut(s)	59, 77, 1183
BmuI	ACTGGG	1 cut(s)	401
BpmI	CTGGAG	2 cut(s)	579, 726
BpuEI	CTTGAG	2 cut(s)	566, 1193
BsaAI	YACGTR	2 cut(s)	196, 217
BsaJI	CCNNGG	1 cut(s)	441
BsaXI	ACNNNNNCTCC	2 cut(s)	393, 423
Bsc4I	CCNNNNNNNGG	1 cut(s)	1052
Bse118I	RCCGGY	1 cut(s)	518
Bse1I	ACTGG	3 cut(s)	27, 407, 440
Bse21I	CCTNAGG	1 cut(s)	942
BseBI	CCWGG	4 cut(s)	574, 657, 1047, 1112
BseDI	CCNNGG	1 cut(s)	441
BseGI	GGATG	6 cut(s)	386, 722, 734, 1055, 1102, 1198
BseLI	CCNNNNNNNGG	1 cut(s)	1052
BseMII	CTCAG	2 cut(s)	956, 1106
BseNI	ACTGG	3 cut(s)	27, 407, 440
BseSI	GKGCMC	1 cut(s)	420
BseXI	GCAGC	6 cut(s)	139, 292, 320, 805, 1178, 1183
BseYI	CCCAGC	1 cut(s)	395
BsgI	GTGCAG	2 cut(s)	114, 780
BshFI	GGCC	1 cut(s)	288
BsiSI	CCGG	1 cut(s)	519
BslFI	GGGAC	2 cut(s)	389, 825
BslI	CCNNNNNNNGG	1 cut(s)	1052
BsmAI	GTCTC	3 cut(s)	9, 882, 1211
BsmFI	GGGAC	2 cut(s)	389, 825
BsmI	GAATGC	2 cut(s)	569, 950
BsnI	GGCC	1 cut(s)	288
Bsp1286I	GDGCHC	1 cut(s)	420
Bsp1407I	TGTACA	1 cut(s)	997
Bsp143I	GATC	2 cut(s)	424, 1147
BspACI	CCGC	3 cut(s)	162, 568, 670
BspANI	GGCC	1 cut(s)	288
BspCNI	CTCAG	2 cut(s)	955, 1105
BspLI	GGNNCC	1 cut(s)	447
BspMAI	CTGCAG	3 cut(s)	310, 1168, 1201
BspPI	GGATC	1 cut(s)	419
BsrBI	CCGCTC	1 cut(s)	670
BsrFI	RCCGGY	1 cut(s)	518
BsrGI	TGTACA	1 cut(s)	997
BsrI	ACTGG	3 cut(s)	27, 407, 440
BssAI	RCCGGY	1 cut(s)	518
BssECI	CCNNGG	1 cut(s)	441
BssMI	GATC	2 cut(s)	424, 1147
BssT1I	CCWWGG	1 cut(s)	441
Bst2UI	CCWGG	4 cut(s)	574, 657, 1047, 1112
Bst4CI	ACNGT	4 cut(s)	351, 503, 626, 1002
BstAPI	GCANNNNNTGC	2 cut(s)	305, 317
BstAUI	TGTACA	1 cut(s)	997
BstBAI	YACGTR	2 cut(s)	196, 217
BstDEI	CTNAG	2 cut(s)	942, 1092
BstF5I	GGATG	6 cut(s)	386, 722, 734, 1055, 1102, 1198
BstKTI	GATC	2 cut(s)	427, 1150
BstMAI	GTCTC	3 cut(s)	9, 882, 1211
BstMBI	GATC	2 cut(s)	424, 1147
BstMWI	GCNNNNNNNGC	6 cut(s)	161, 305, 317, 752, 827, 1166
BstNI	CCWGG	4 cut(s)	574, 657, 1047, 1112
BstSCI	CCNGG	4 cut(s)	572, 655, 1045, 1110
BstSFI	CTRYAG	3 cut(s)	306, 1164, 1197
BstSLI	GKGCMC	1 cut(s)	420
BstV1I	GCAGC	6 cut(s)	139, 292, 320, 805, 1178, 1183
BstXI	CCANNNNNNTGG	2 cut(s)	242, 435
Bsu36I	CCTNAGG	1 cut(s)	942
BsuRI	GGCC	1 cut(s)	288
BtsCI	GGATG	6 cut(s)	386, 722, 734, 1055, 1102, 1198
BtsIMutI	CAGTG	5 cut(s)	34, 264, 433, 631, 712
CaiI	CAGNNNCTG	2 cut(s)	579, 794
Cfr10I	RCCGGY	1 cut(s)	518
Cfr13I	GGNCC	3 cut(s)	438, 445, 672
CseI	GACGC	1 cut(s)	158
Csp6I	GTAC	3 cut(s)	187, 347, 998
CviAII	CATG	3 cut(s)	242, 776, 1064
CviQI	GTAC	3 cut(s)	187, 347, 998
DdeI	CTNAG	2 cut(s)	942, 1092
DpnI	GATC	2 cut(s)	426, 1149
DpnII	GATC	2 cut(s)	424, 1147
DrdI	GACNNNNNNGTC	1 cut(s)	896
DseDI	GACNNNNNNGTC	1 cut(s)	896
EaeI	YGGCCR	1 cut(s)	286
EciI	GGCGGA	1 cut(s)	151
Eco130I	CCWWGG	1 cut(s)	441
Eco47I	GGWCC	3 cut(s)	438, 445, 672
Eco57I	CTGAAG	1 cut(s)	315
Eco72I	CACGTG	1 cut(s)	196
Eco81I	CCTNAGG	1 cut(s)	942
EcoRII	CCWGG	4 cut(s)	572, 655, 1045, 1110
EcoT14I	CCWWGG	1 cut(s)	441
EcoT22I	ATGCAT	1 cut(s)	243
ErhI	CCWWGG	1 cut(s)	441
FaeI	CATG	3 cut(s)	245, 779, 1067
FalI	AAGNNNNNCTT	2 cut(s)	528, 560
FaqI	GGGAC	2 cut(s)	389, 825
FatI	CATG	3 cut(s)	241, 775, 1063
FauNDI	CATATG	1 cut(s)	373
FbaI	TGATCA	1 cut(s)	1147
Fnu4HI	GCNGC	7 cut(s)	153, 306, 309, 568, 819, 1167, 1197
FokI	GGATG	6 cut(s)	393, 729, 741, 1062, 1109, 1205
Fsp4HI	GCNGC	7 cut(s)	153, 306, 309, 568, 819, 1167, 1197
FspBI	CTAG	1 cut(s)	584
GluI	GCNGC	7 cut(s)	153, 306, 309, 568, 819, 1167, 1197
GsaI	CCCAGC	1 cut(s)	399
GsuI	CTGGAG	2 cut(s)	579, 726
HaeIII	GGCC	1 cut(s)	288
HapII	CCGG	1 cut(s)	519
HgaI	GACGC	1 cut(s)	158
Hin1II	CATG	3 cut(s)	245, 779, 1067
HincII	GTYRAC	1 cut(s)	256
HindII	GTYRAC	1 cut(s)	256
HinfI	GANTC	7 cut(s)	402, 791, 857, 878, 921, 928, 1070
HpaII	CCGG	1 cut(s)	519
HphI	GGTGA	3 cut(s)	45, 347, 523
Hpy166II	GTNNAC	1 cut(s)	256
Hpy188I	TCNGA	4 cut(s)	175, 477, 767, 994
Hpy188III	TCNNGA	4 cut(s)	62, 119, 925, 1094
Hpy8I	GTNNAC	1 cut(s)	256
HpyAV	CCTTC	3 cut(s)	104, 144, 371
HpyCH4III	ACNGT	4 cut(s)	351, 503, 626, 1002
HpyCH4IV	ACGT	4 cut(s)	195, 216, 314, 701
HpyF10VI	GCNNNNNNNGC	6 cut(s)	161, 305, 317, 752, 827, 1166
HpyF3I	CTNAG	2 cut(s)	942, 1092
HpySE526I	ACGT	4 cut(s)	195, 216, 314, 701
Hsp92II	CATG	3 cut(s)	245, 779, 1067
Ksp22I	TGATCA	1 cut(s)	1147
Kzo9I	GATC	2 cut(s)	424, 1147
LmnI	GCTCC	2 cut(s)	745, 1183
Lsp1109I	GCAGC	6 cut(s)	139, 292, 320, 805, 1178, 1183
LweI	GCATC	3 cut(s)	59, 77, 1183
MaeI	CTAG	1 cut(s)	584
MaeII	ACGT	4 cut(s)	195, 216, 314, 701
MaeIII	GTNAC	3 cut(s)	209, 709, 784
MalI	GATC	2 cut(s)	426, 1149
MbiI	CCGCTC	1 cut(s)	670
MboI	GATC	2 cut(s)	424, 1147
MboII	GAAGA	2 cut(s)	17, 678
MfeI	CAATTG	1 cut(s)	735
MhlI	GDGCHC	1 cut(s)	420
MlsI	TGGCCA	1 cut(s)	288
MluCI	AATT	7 cut(s)	57, 169, 455, 735, 901, 915, 979
MluNI	TGGCCA	1 cut(s)	288
MlyI	GAGTC	2 cut(s)	411, 1064
MmeI	TCCRAC	3 cut(s)	198, 539, 706
MnlI	CCTC	8 cut(s)	113, 270, 441, 516, 658, 714, 766, 951
Mox20I	TGGCCA	1 cut(s)	288
Mph1103I	ATGCAT	1 cut(s)	243
MroXI	GAANNNNTTC	1 cut(s)	114
MscI	TGGCCA	1 cut(s)	288
MseI	TTAA	4 cut(s)	387, 621, 780, 1016
Msp20I	TGGCCA	1 cut(s)	288
MspI	CCGG	1 cut(s)	519
MspR9I	CCNGG	4 cut(s)	574, 657, 1047, 1112
MunI	CAATTG	1 cut(s)	735
Mva1269I	GAATGC	2 cut(s)	569, 950
MvaI	CCWGG	4 cut(s)	574, 657, 1047, 1112
MwoI	GCNNNNNNNGC	6 cut(s)	161, 305, 317, 752, 827, 1166
NdeI	CATATG	1 cut(s)	373
NdeII	GATC	2 cut(s)	424, 1147
NlaIII	CATG	3 cut(s)	245, 779, 1067
NlaIV	GGNNCC	1 cut(s)	447
NmuCI	GTSAC	2 cut(s)	209, 709
NsiI	ATGCAT	1 cut(s)	243
PcsI	WCGNNNNNNNCGW	1 cut(s)	222
PctI	GAATGC	2 cut(s)	569, 950
PdmI	GAANNNNTTC	1 cut(s)	114
PfeI	GAWTC	5 cut(s)	791, 857, 878, 921, 928
PflMI	CCANNNNNTGG	1 cut(s)	1052
PfoI	TCCNGGA	1 cut(s)	655
PkrI	GCNGC	7 cut(s)	154, 307, 310, 569, 820, 1168, 1198
PleI	GAGTC	2 cut(s)	410, 1064
PmaCI	CACGTG	1 cut(s)	196
PmlI	CACGTG	1 cut(s)	196
PpsI	GAGTC	2 cut(s)	410, 1064
Ppu21I	YACGTR	2 cut(s)	196, 217
PsiI	TTATAA	1 cut(s)	1104
Psp1406I	AACGTT	2 cut(s)	314, 701
Psp6I	CCWGG	4 cut(s)	572, 655, 1045, 1110
PspCI	CACGTG	1 cut(s)	196
PspFI	CCCAGC	1 cut(s)	395
PspGI	CCWGG	4 cut(s)	572, 655, 1045, 1110
PspN4I	GGNNCC	1 cut(s)	447
PspPI	GGNCC	3 cut(s)	438, 445, 672
PstI	CTGCAG	3 cut(s)	310, 1168, 1201
PstNI	CAGNNNCTG	2 cut(s)	579, 794
RsaI	GTAC	3 cut(s)	188, 348, 999
RsaNI	GTAC	3 cut(s)	187, 347, 998
SaqAI	TTAA	4 cut(s)	387, 621, 780, 1016
SatI	GCNGC	7 cut(s)	153, 306, 309, 568, 819, 1167, 1197
Sau3AI	GATC	2 cut(s)	424, 1147
Sau96I	GGNCC	3 cut(s)	438, 445, 672
SchI	GAGTC	2 cut(s)	411, 1064
ScrFI	CCNGG	4 cut(s)	574, 657, 1047, 1112
SduI	GDGCHC	1 cut(s)	420
SfaNI	GCATC	3 cut(s)	59, 77, 1183
SfcI	CTRYAG	3 cut(s)	306, 1164, 1197
SinI	GGWCC	3 cut(s)	438, 445, 672
SmlI	CTYRAG	2 cut(s)	545, 1208
SmoI	CTYRAG	2 cut(s)	545, 1208
Sse9I	AATT	7 cut(s)	57, 169, 455, 735, 901, 915, 979
SsiI	CCGC	3 cut(s)	162, 568, 670
SspMI	CTAG	1 cut(s)	584
StyD4I	CCNGG	4 cut(s)	572, 655, 1045, 1110
StyI	CCWWGG	1 cut(s)	441
TaaI	ACNGT	4 cut(s)	351, 503, 626, 1002
TaiI	ACGT	4 cut(s)	198, 219, 317, 704
TasI	AATT	7 cut(s)	57, 169, 455, 735, 901, 915, 979
TatI	WGTACW	3 cut(s)	186, 346, 997
TauI	GCSGC	1 cut(s)	570
TfiI	GAWTC	5 cut(s)	791, 857, 878, 921, 928
Tru1I	TTAA	4 cut(s)	387, 621, 780, 1016
Tru9I	TTAA	4 cut(s)	387, 621, 780, 1016
TscAI	CASTG	5 cut(s)	34, 271, 440, 631, 712
TseFI	GTSAC	2 cut(s)	209, 709
TseI	GCWGC	6 cut(s)	152, 305, 308, 818, 1166, 1196
Tsp45I	GTSAC	2 cut(s)	209, 709
TspRI	CASTG	5 cut(s)	34, 271, 440, 631, 712
Van91I	CCANNNNNTGG	1 cut(s)	1052
VpaK11BI	GGWCC	3 cut(s)	438, 445, 672
XapI	RAATTY	1 cut(s)	455
XmnI	GAANNNNTTC	1 cut(s)	114
XspI	CTAG	1 cut(s)	584
Zsp2I	ATGCAT	1 cut(s)	243

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.