Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8508251.1

Orthogroup ID

OG0011569

Physical Location & Seq

Genomic Coordinates Reverse (-)

534 .. 3431

Gene Structure 2898 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8508251.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

atgaaaactttgcgcagtcctcacaatccaaccggcaaagttttcaccaaagatgaacttgagattattgctggagaatgccgcaccaggaactgcctagctataacagatgaagtatatgaacatataacatttaacagtgagaagcatatatcccttgcctcgtttccaggaatgagagagcggaccatcatcacatcttccttatctaaaacgttcagtgtcacaggatggagggttggatgggcaattgctccagcttttattgcctctgcaatcagaaacattcatgttaaagttacagattctgcaccagcacctttccaagaagctgccttgactgctttgagaagtccccctgaatactttgaatcattgagaagtgattatgaatcaaggagagactacatcgtcaatttacttgccagaattggattcaagattcatttcaagcctcagggtgcattctttttatttgcagagatacctgaaaattgcccactttctgatgtagagtatgttagaaagttaatacaacaagcaggggtagtggctgtgccaggatgtggattttttcatgcagactcatctgtggagaaactttctcaggatggttataactaccaggatagatacatcaggtttgctttctgtaaaagtgatcatactttggcttctgcagcaaaaagacttggggagcttttggatgctgcaggggtggtgtttgacgacggtaaggcggcgacgcaggtcaaaagtctcgtttggatcgcgattgtccaggtttcgtggcaacgcaacagattggtcgagcggcgactccctgcaaggctctatggagtttctggtaggagggcggcgaccctaggttttgctgggtggcggtttgatttgcttctaggccgaggtcccggagtttctcccgtagtccaaggcaatggtggaggagcgtgcccgcccgccagaggattgatggagcgcgttcttccagcggctccgatctgctcgatctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006558 GO:0006559 GO:0006568 GO:0006569 GO:0006575 GO:0006576 GO:0006586 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008483 GO:0008652 GO:0009056 GO:0009058 GO:0009063 GO:0009072 GO:0009074 GO:0009308 GO:0009310 GO:0009987 GO:0016053 GO:0016054 GO:0016212 GO:0016740 GO:0016769 GO:0016829 GO:0016846 GO:0017144 GO:0019439 GO:0019752 GO:0031974 GO:0031981 GO:0034641 GO:0036137 GO:0042180 GO:0042402 GO:0042430 GO:0042436 GO:0042537 GO:0042737 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044281 GO:0044282 GO:0044283 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046218 GO:0046394 GO:0046395 GO:0046483 GO:0046700 GO:0046983 GO:0047312 GO:0047804 GO:0047945 GO:0070013 GO:0070189 GO:0070546 GO:0070548 GO:0071704 GO:0097052 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901566 GO:1901575 GO:1901576 GO:1901605 GO:1901606 GO:1902221 GO:1902222

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aminotran_1_2

Protein Analysis

337

Amino Acids

37.15

Weight (kDa)

9.25

Isoelectric Point (pI)

48.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011569)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g39650 FvH4_5g39650 FvH4_5g39650 FvH4_5g39650
malus_domestica	MD11G1317900.v1.1
prunus_persica	Prupe.8G269100_v2.0.a1
pyrus_communis	pycom11g27710
rosa_chinensis	RchiOBHm_Chr7g0241961
rosa_laevigata	RLG00000000526
rosa_multiflora	Rmu_co8508251.1_g000001 Rmu_sc0003266.1_g000006
rosa_roxburghii	Rroxscaffold_3G00218430
rosa_rugosa	Rorug07G0349100 Rorug07G0349200 Rorug07G0349300.1 Rorug07G0349400
rosa_samantha	Rh7AG503300 Rh7BG474500 Rh7DG488900
rosa_wichuraiana	Rw7G042560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	618
AasI	GACNNNNNNGTC	1 cut(s)	410
Acc16I	TGCGCA	1 cut(s)	14
Acc36I	ACCTGC	1 cut(s)	739
AccB7I	CCANNNNNTGG	1 cut(s)	566
AccBSI	CCGCTC	2 cut(s)	184, 814
AccII	CGCG	2 cut(s)	773, 981
AciI	CCGC	9 cut(s)	82, 184, 740, 814, 857, 883, 956, 960, 992
AclI	AACGTT	1 cut(s)	215
AclWI	GGATC	1 cut(s)	776
AfiI	CCNNNNNNNGG	2 cut(s)	566, 965
AgsI	TTSAA	3 cut(s)	371, 439, 451
AjnI	CCWGG	5 cut(s)	86, 169, 559, 624, 780
AluBI	AGCT	4 cut(s)	101, 260, 332, 700
AluI	AGCT	4 cut(s)	101, 260, 332, 700
Alw26I	GTCTC	2 cut(s)	396, 764
AlwI	GGATC	1 cut(s)	776
AlwNI	CAGNNNCTG	2 cut(s)	93, 308
AoxI	GGCC	1 cut(s)	901
ApeKI	GCWGC	3 cut(s)	332, 680, 710
AspA2I	CCTAGG	1 cut(s)	865
AspLEI	GCGC	2 cut(s)	15, 981
AspS9I	GGNCC	2 cut(s)	186, 908
AsuC2I	CCSGG	1 cut(s)	912
AsuHPI	GGTGA	1 cut(s)	37
AvaII	GGWCC	2 cut(s)	186, 908
AvrII	CCTAGG	1 cut(s)	865
AxyI	CCTNAGG	1 cut(s)	456
BaeGI	GKGCMC	1 cut(s)	956
BbvI	GCAGC	3 cut(s)	319, 692, 697
BccI	CCATC	5 cut(s)	197, 225, 237, 605, 967
BciT130I	CCWGG	5 cut(s)	88, 171, 561, 626, 782
BclI	TGATCA	1 cut(s)	661
BcnI	CCSGG	1 cut(s)	912
BcoDI	GTCTC	2 cut(s)	396, 764
BfaI	CTAG	3 cut(s)	98, 866, 899
BfmI	CTRYAG	2 cut(s)	678, 711
BfuAI	ACCTGC	1 cut(s)	739
BisI	GCNGC	8 cut(s)	82, 333, 681, 711, 741, 815, 858, 993
BlnI	CCTAGG	1 cut(s)	865
BlsI	GCNGC	8 cut(s)	83, 334, 682, 712, 742, 816, 859, 994
Bme1390I	CCNGG	6 cut(s)	88, 171, 561, 626, 782, 912
Bme18I	GGWCC	2 cut(s)	186, 908
BmgT120I	GGNCC	2 cut(s)	186, 908
BmiI	GGNNCC	2 cut(s)	910, 996
BmrFI	CCNGG	6 cut(s)	88, 171, 561, 626, 782, 912
BmsI	GCATC	1 cut(s)	697
BoxI	GACNNNNGTC	1 cut(s)	749
BpmI	CTGGAG	2 cut(s)	93, 240
BpuEI	CTTGAG	1 cut(s)	80
BpuMI	CCSGG	1 cut(s)	912
BsaJI	CCNNGG	3 cut(s)	865, 904, 931
Bsc4I	CCNNNNNNNGG	2 cut(s)	566, 965
Bse118I	RCCGGY	1 cut(s)	32
Bse21I	CCTNAGG	1 cut(s)	456
Bse3DI	GCAATG	1 cut(s)	943
BseBI	CCWGG	5 cut(s)	88, 171, 561, 626, 782
BseDI	CCNNGG	3 cut(s)	865, 904, 931
BseGI	GGATG	5 cut(s)	236, 248, 569, 616, 712
BseLI	CCNNNNNNNGG	2 cut(s)	566, 965
BseMI	GCAATG	1 cut(s)	943
BseMII	CTCAG	2 cut(s)	470, 620
BseRI	GAGGAG	1 cut(s)	960
BseSI	GKGCMC	1 cut(s)	956
BseXI	GCAGC	3 cut(s)	319, 692, 697
BseYI	CCCAGC	1 cut(s)	875
BsgI	GTGCAG	1 cut(s)	294
Bsh1236I	CGCG	2 cut(s)	773, 981
BshFI	GGCC	1 cut(s)	903
BsiSI	CCGG	2 cut(s)	33, 912
BslFI	GGGAC	2 cut(s)	339, 894
BslI	CCNNNNNNNGG	2 cut(s)	566, 965
BsmAI	GTCTC	2 cut(s)	396, 764
BsmFI	GGGAC	2 cut(s)	339, 894
BsmI	GAATGC	2 cut(s)	83, 464
BsnI	GGCC	1 cut(s)	903
Bsp1286I	GDGCHC	1 cut(s)	956
Bsp143I	GATC	4 cut(s)	661, 768, 999, 1008
Bsp68I	TCGCGA	1 cut(s)	773
BspACI	CCGC	9 cut(s)	82, 184, 740, 814, 857, 883, 956, 960, 992
BspANI	GGCC	1 cut(s)	903
BspCNI	CTCAG	2 cut(s)	469, 619
BspFNI	CGCG	2 cut(s)	773, 981
BspLI	GGNNCC	2 cut(s)	910, 996
BspMAI	CTGCAG	2 cut(s)	682, 715
BspMI	ACCTGC	1 cut(s)	739
BspPI	GGATC	1 cut(s)	776
BsrBI	CCGCTC	2 cut(s)	184, 814
BsrDI	GCAATG	1 cut(s)	943
BsrFI	RCCGGY	1 cut(s)	32
BssAI	RCCGGY	1 cut(s)	32
BssECI	CCNNGG	3 cut(s)	865, 904, 931
BssMI	GATC	4 cut(s)	661, 768, 999, 1008
BssT1I	CCWWGG	2 cut(s)	865, 931
Bst2UI	CCWGG	5 cut(s)	88, 171, 561, 626, 782
Bst4CI	ACNGT	2 cut(s)	140, 734
BstC8I	GCNNGC	3 cut(s)	952, 956, 960
BstDEI	CTNAG	2 cut(s)	456, 606
BstF5I	GGATG	5 cut(s)	236, 248, 569, 616, 712
BstFNI	CGCG	2 cut(s)	773, 981
BstHHI	GCGC	2 cut(s)	15, 981
BstKTI	GATC	4 cut(s)	664, 771, 1002, 1011
BstMAI	GTCTC	2 cut(s)	396, 764
BstMBI	GATC	4 cut(s)	661, 768, 999, 1008
BstMWI	GCNNNNNNNGC	3 cut(s)	266, 341, 680
BstNI	CCWGG	5 cut(s)	88, 171, 561, 626, 782
BstPAI	GACNNNNGTC	1 cut(s)	749
BstSCI	CCNGG	6 cut(s)	86, 169, 559, 624, 780, 910
BstSFI	CTRYAG	2 cut(s)	678, 711
BstSLI	GKGCMC	1 cut(s)	956
BstUI	CGCG	2 cut(s)	773, 981
BstV1I	GCAGC	3 cut(s)	319, 692, 697
BstXI	CCANNNNNNTGG	1 cut(s)	938
Bsu36I	CCTNAGG	1 cut(s)	456
BsuRI	GGCC	1 cut(s)	903
BtsCI	GGATG	5 cut(s)	236, 248, 569, 616, 712
BtsIMutI	CAGTG	2 cut(s)	145, 226
BtuMI	TCGCGA	1 cut(s)	773
BveI	ACCTGC	1 cut(s)	739
Cac8I	GCNNGC	3 cut(s)	952, 956, 960
CaiI	CAGNNNCTG	2 cut(s)	93, 308
CfoI	GCGC	2 cut(s)	15, 981
Cfr10I	RCCGGY	1 cut(s)	32
Cfr13I	GGNCC	2 cut(s)	186, 908
CseI	GACGC	1 cut(s)	754
CviAII	CATG	2 cut(s)	290, 578
DdeI	CTNAG	2 cut(s)	456, 606
DpnI	GATC	4 cut(s)	663, 770, 1001, 1010
DpnII	GATC	4 cut(s)	661, 768, 999, 1008
DrdI	GACNNNNNNGTC	1 cut(s)	410
DseDI	GACNNNNNNGTC	1 cut(s)	410
Eco130I	CCWWGG	2 cut(s)	865, 931
Eco47I	GGWCC	2 cut(s)	186, 908
Eco81I	CCTNAGG	1 cut(s)	456
EcoO109I	RGGNCCY	1 cut(s)	908
EcoRII	CCWGG	5 cut(s)	86, 169, 559, 624, 780
EcoT14I	CCWWGG	2 cut(s)	865, 931
ErhI	CCWWGG	2 cut(s)	865, 931
FaeI	CATG	2 cut(s)	293, 581
FalI	AAGNNNNNCTT	2 cut(s)	42, 74
FaqI	GGGAC	2 cut(s)	339, 894
FatI	CATG	2 cut(s)	289, 577
FauI	CCCGC	2 cut(s)	963, 967
FbaI	TGATCA	1 cut(s)	661
Fnu4HI	GCNGC	8 cut(s)	82, 333, 681, 711, 741, 815, 858, 993
FokI	GGATG	5 cut(s)	243, 255, 576, 623, 719
Fsp4HI	GCNGC	8 cut(s)	82, 333, 681, 711, 741, 815, 858, 993
FspBI	CTAG	3 cut(s)	98, 866, 899
FspI	TGCGCA	1 cut(s)	14
GlaI	GCGC	2 cut(s)	14, 980
GluI	GCNGC	8 cut(s)	82, 333, 681, 711, 741, 815, 858, 993
GsaI	CCCAGC	1 cut(s)	879
GsuI	CTGGAG	2 cut(s)	93, 240
HaeIII	GGCC	1 cut(s)	903
HapII	CCGG	2 cut(s)	33, 912
HgaI	GACGC	1 cut(s)	754
HhaI	GCGC	2 cut(s)	15, 981
Hin1II	CATG	2 cut(s)	293, 581
Hin6I	GCGC	2 cut(s)	13, 979
HinP1I	GCGC	2 cut(s)	13, 979
HinfI	GANTC	7 cut(s)	305, 371, 392, 435, 442, 584, 819
HpaII	CCGG	2 cut(s)	33, 912
HphI	GGTGA	1 cut(s)	37
Hpy188I	TCNGA	4 cut(s)	281, 508, 999, 1013
Hpy188III	TCNNGA	3 cut(s)	439, 608, 772
Hpy99I	CGWCG	2 cut(s)	734, 748
HpyCH4III	ACNGT	2 cut(s)	140, 734
HpyCH4IV	ACGT	1 cut(s)	215
HpyCH4V	TGCA	8 cut(s)	275, 311, 464, 479, 581, 680, 713, 827
HpyF10VI	GCNNNNNNNGC	3 cut(s)	266, 341, 680
HpyF3I	CTNAG	2 cut(s)	456, 606
HpySE526I	ACGT	1 cut(s)	215
Hsp92II	CATG	2 cut(s)	293, 581
HspAI	GCGC	2 cut(s)	13, 979
Ksp22I	TGATCA	1 cut(s)	661
Kzo9I	GATC	4 cut(s)	661, 768, 999, 1008
LmnI	GCTCC	5 cut(s)	259, 697, 947, 976, 1000
Lsp1109I	GCAGC	3 cut(s)	319, 692, 697
LweI	GCATC	1 cut(s)	697
MaeI	CTAG	3 cut(s)	98, 866, 899
MaeII	ACGT	1 cut(s)	215
MaeIII	GTNAC	2 cut(s)	223, 298
MalI	GATC	4 cut(s)	663, 770, 1001, 1010
MbiI	CCGCTC	2 cut(s)	184, 814
MboI	GATC	4 cut(s)	661, 768, 999, 1008
MboII	GAAGA	2 cut(s)	192, 977
MfeI	CAATTG	1 cut(s)	249
MhlI	GDGCHC	1 cut(s)	956
MluCI	AATT	4 cut(s)	249, 415, 429, 493
MlyI	GAGTC	2 cut(s)	578, 813
MmeI	TCCRAC	2 cut(s)	53, 220
MnlI	CCTC	9 cut(s)	30, 172, 228, 280, 465, 846, 899, 938, 959
MseI	TTAA	3 cut(s)	135, 294, 530
MspA1I	CMGCKG	1 cut(s)	992
MspI	CCGG	2 cut(s)	33, 912
MspR9I	CCNGG	6 cut(s)	88, 171, 561, 626, 782, 912
MunI	CAATTG	1 cut(s)	249
Mva1269I	GAATGC	2 cut(s)	83, 464
MvaI	CCWGG	5 cut(s)	88, 171, 561, 626, 782
MvnI	CGCG	2 cut(s)	773, 981
MwoI	GCNNNNNNNGC	3 cut(s)	266, 341, 680
NciI	CCSGG	1 cut(s)	912
NdeII	GATC	4 cut(s)	661, 768, 999, 1008
NlaIII	CATG	2 cut(s)	293, 581
NlaIV	GGNNCC	2 cut(s)	910, 996
NmeAIII	GCCGAG	1 cut(s)	929
NmuCI	GTSAC	1 cut(s)	223
NruI	TCGCGA	1 cut(s)	773
NsbI	TGCGCA	1 cut(s)	14
PctI	GAATGC	2 cut(s)	83, 464
PfeI	GAWTC	5 cut(s)	305, 371, 392, 435, 442
PflMI	CCANNNNNTGG	1 cut(s)	566
PfoI	TCCNGGA	2 cut(s)	169, 910
PkrI	GCNGC	8 cut(s)	83, 334, 682, 712, 742, 816, 859, 994
PleI	GAGTC	2 cut(s)	578, 813
PpsI	GAGTC	2 cut(s)	578, 813
PpuMI	RGGWCCY	1 cut(s)	908
PshAI	GACNNNNGTC	1 cut(s)	749
PsiI	TTATAA	1 cut(s)	618
Psp1406I	AACGTT	1 cut(s)	215
Psp5II	RGGWCCY	1 cut(s)	908
Psp6I	CCWGG	5 cut(s)	86, 169, 559, 624, 780
PspFI	CCCAGC	1 cut(s)	875
PspGI	CCWGG	5 cut(s)	86, 169, 559, 624, 780
PspN4I	GGNNCC	2 cut(s)	910, 996
PspPI	GGNCC	2 cut(s)	186, 908
PspPPI	RGGWCCY	1 cut(s)	908
PstI	CTGCAG	2 cut(s)	682, 715
PstNI	CAGNNNCTG	2 cut(s)	93, 308
RruI	TCGCGA	1 cut(s)	773
SaqAI	TTAA	3 cut(s)	135, 294, 530
SatI	GCNGC	8 cut(s)	82, 333, 681, 711, 741, 815, 858, 993
Sau3AI	GATC	4 cut(s)	661, 768, 999, 1008
Sau96I	GGNCC	2 cut(s)	186, 908
SchI	GAGTC	2 cut(s)	578, 813
ScrFI	CCNGG	6 cut(s)	88, 171, 561, 626, 782, 912
SduI	GDGCHC	1 cut(s)	956
SfaNI	GCATC	1 cut(s)	697
SfcI	CTRYAG	2 cut(s)	678, 711
SinI	GGWCC	2 cut(s)	186, 908
SmlI	CTYRAG	1 cut(s)	59
SmoI	CTYRAG	1 cut(s)	59
Sse9I	AATT	4 cut(s)	249, 415, 429, 493
SsiI	CCGC	9 cut(s)	82, 184, 740, 814, 857, 883, 956, 960, 992
SspMI	CTAG	3 cut(s)	98, 866, 899
StyD4I	CCNGG	6 cut(s)	86, 169, 559, 624, 780, 910
StyI	CCWWGG	2 cut(s)	865, 931
TaaI	ACNGT	2 cut(s)	140, 734
TaiI	ACGT	1 cut(s)	218
TaqI	TCGA	2 cut(s)	810, 1007
TasI	AATT	4 cut(s)	249, 415, 429, 493
TauI	GCSGC	5 cut(s)	84, 743, 817, 860, 995
TfiI	GAWTC	5 cut(s)	305, 371, 392, 435, 442
Tru1I	TTAA	3 cut(s)	135, 294, 530
Tru9I	TTAA	3 cut(s)	135, 294, 530
TscAI	CASTG	2 cut(s)	145, 226
TseFI	GTSAC	1 cut(s)	223
TseI	GCWGC	3 cut(s)	332, 680, 710
Tsp45I	GTSAC	1 cut(s)	223
TspDTI	ATGAA	8 cut(s)	17, 69, 126, 135, 278, 405, 434, 566
TspRI	CASTG	2 cut(s)	145, 226
Van91I	CCANNNNNTGG	1 cut(s)	566
VpaK11BI	GGWCC	2 cut(s)	186, 908
XcmI	CCANNNNNNNNNTGG	2 cut(s)	938, 970
XmaJI	CCTAGG	1 cut(s)	865
XspI	CTAG	3 cut(s)	98, 866, 899

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.