FvH4_6g00210

Dehydrogenase reductase SDR family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0007904
Physical Location & Seq
Reverse (-)
161459 .. 165404
3946 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g00210.t1

Sequence Viewer

Length: 990 bp
ATGGGGATGGTGGTGCTGCTATTCCTGGTTTCTCTGCTTCTTCTTCTCTTGTTTGCATTCATCAAATTTGTCACAGCTGATGGGGATTTCACTTTGATGTCCAAACGTCATGTTAATCGTGAAGAAATCGAAGACAAAGTTGTTTGGATAACTGGTGCTAGCCGTGGAATTGGGGAAGTTCTTGCTAAGCAACTTGCGAATCTGGGAGCCAAGCTCATTATTTCCGCTCGTAATGAAGCCGAATTGGAGCGAGTCAAGAAACAACTTACTGGTAAACATGCACCTGATGGTGTGAAAGTTTTGCCATTGGATTTGGCTTCTGGTGAAGACTGTCTCAAGGATGCTGTGGAGGAAGCAGAGTCATTCTTTCCGAATGCTGGTGTCGATTACATGATCCACAATGCTGCTTTTGAGCGTCCTAAAACTACAGCCTTGGATGTTACTGAGGAGAGTCTGAAGGTAACTTTCAATGTCAATGTTCTTGGGACAATATCGCTTACCCGACTACTTGCACCTTATATGCTGAGGCGAGGGAAAGGCCGTTTTGTTGTGATGAGCAGTGCTGCAGGGAAAACACCTGCACCAGGTCAGGCCGTATACTCTGCCTCTAAACATGCCTTAAATGGGTACTTTCACACCTTGCGTTCTGAGCTCTATCAGAAAGGAATTGGGGTGACCATTGTCTGTCCTGGTCCTATACAAACATCAAATGGTACAGGAGCAGCAAGCTCAGAAAATAAAGCTTCTTCTGAGAAGCGTGTTTCATCAGAAAGGTGTGCAGAGTTGACAATAATTGCTGCCACCCATGGTCTAAAGGAAGTTTGGATATCATACCAGCCTGTACTGGCTGTAATGTACTTGGTGCAGTACATGCCAACCATTGGTTATTGGCTTATGGACAAGATTGGTGGAAATCGAGTTGAGGCTGCTGCAAGGAAGGGAAACACTTACTCATTAAGCTTACTATTCGGGAGAAAGAAGGCATCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
adh_short

Protein Analysis

330

Amino Acids

35.79

Weight (kDa)

9.26

Isoelectric Point (pI)

35.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 46 - 238 7.7e-47 short chain dehydrogenase
KR PF08659 48 - 216 3.2e-14 KR domain
Polysacc_synt_2 PF02719 48 - 238 5.9e-06 Polysaccharide biosynthesis protein
adh_short_C2 PF13561 52 - 266 1.3e-35 Enoyl-(Acyl carrier protein) reductase
NAD_binding_10 PF13460 52 - 264 9.2e-07 NAD(P)H-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 586
Acc36I ACCTGC 1 cut(s) 586
AccB7I CCANNNNNTGG 1 cut(s) 881
AccBSI CCGCTC 1 cut(s) 227
AccI GTMKAC 1 cut(s) 597
AciI CCGC 1 cut(s) 225
AclWI GGATC 1 cut(s) 388
AcsI RAATTY 1 cut(s) 65
AcuI CTGAAG 1 cut(s) 476
AfaI GTAC 5 cut(s) 629, 715, 843, 857, 869
AfiI CCNNNNNNNGG 4 cut(s) 377, 584, 624, 881
AgsI TTSAA 1 cut(s) 469
AjnI CCWGG 3 cut(s) 24, 583, 688
AluBI AGCT 6 cut(s) 77, 214, 652, 729, 743, 960
AluI AGCT 6 cut(s) 77, 214, 652, 729, 743, 960
Alw21I GWGCWC 1 cut(s) 654
Alw26I GTCTC 1 cut(s) 338
AlwI GGATC 1 cut(s) 388
AoxI GGCC 2 cut(s) 538, 591
ApeKI GCWGC 7 cut(s) 16, 404, 563, 722, 797, 926, 929
ApoI RAATTY 1 cut(s) 65
AspS9I GGNCC 1 cut(s) 692
AsuHPI GGTGA 2 cut(s) 335, 685
AsuNHI GCTAGC 1 cut(s) 158
AvaII GGWCC 1 cut(s) 692
BanII GRGCYC 1 cut(s) 654
BbsI GAAGAC 2 cut(s) 138, 333
Bbv12I GWGCWC 1 cut(s) 654
BbvCI CCTCAGC 1 cut(s) 524
BbvI GCAGC 7 cut(s) 3, 391, 550, 734, 784, 913, 916
BccI CCATC 2 cut(s) 74, 281
BceAI ACGGC 3 cut(s) 147, 525, 578
BciT130I CCWGG 3 cut(s) 26, 585, 690
BcoDI GTCTC 1 cut(s) 338
BfaI CTAG 1 cut(s) 159
BfmI CTRYAG 2 cut(s) 426, 564
BfuAI ACCTGC 1 cut(s) 586
BisI GCNGC 7 cut(s) 17, 405, 564, 723, 798, 927, 930
BlpI GCTNAGC 1 cut(s) 186
BlsI GCNGC 7 cut(s) 18, 406, 565, 724, 799, 928, 931
Bme1390I CCNGG 3 cut(s) 26, 585, 690
Bme18I GGWCC 1 cut(s) 692
BmgT120I GGNCC 1 cut(s) 692
BmiI GGNNCC 1 cut(s) 208
BmrFI CCNGG 3 cut(s) 26, 585, 690
BmsI GCATC 1 cut(s) 331
BmtI GCTAGC 1 cut(s) 162
BoxI GACNNNNGTC 1 cut(s) 680
BpiI GAAGAC 2 cut(s) 138, 333
BplI GAGNNNNNCTC 2 cut(s) 198, 230
Bpu10I CCTNAGC 1 cut(s) 524
Bpu1102I GCTNAGC 1 cut(s) 186
BpuEI CTTGAG 1 cut(s) 320
BsaJI CCNNGG 3 cut(s) 163, 432, 805
Bsc4I CCNNNNNNNGG 4 cut(s) 377, 584, 624, 881
Bse1I ACTGG 3 cut(s) 157, 274, 849
BseBI CCWGG 3 cut(s) 26, 585, 690
BseDI CCNNGG 3 cut(s) 163, 432, 805
BseGI GGATG 3 cut(s) 12, 346, 442
BseLI CCNNNNNNNGG 4 cut(s) 377, 584, 624, 881
BseMII CTCAG 5 cut(s) 435, 515, 639, 741, 744
BseNI ACTGG 3 cut(s) 157, 274, 849
BseRI GAGGAG 1 cut(s) 461
BseXI GCAGC 7 cut(s) 3, 391, 550, 734, 784, 913, 916
BsgI GTGCAG 3 cut(s) 564, 798, 884
BshFI GGCC 2 cut(s) 540, 593
BsiHKAI GWGCWC 1 cut(s) 654
BslFI GGGAC 1 cut(s) 499
BslI CCNNNNNNNGG 4 cut(s) 377, 584, 624, 881
BsmAI GTCTC 1 cut(s) 338
BsmFI GGGAC 1 cut(s) 499
BsmI GAATGC 2 cut(s) 56, 379
BsnI GGCC 2 cut(s) 540, 593
Bsp1286I GDGCHC 1 cut(s) 654
Bsp143I GATC 1 cut(s) 393
Bsp1720I GCTNAGC 1 cut(s) 186
Bsp19I CCATGG 1 cut(s) 805
BspACI CCGC 1 cut(s) 225
BspANI GGCC 2 cut(s) 540, 593
BspCNI CTCAG 5 cut(s) 436, 516, 640, 742, 743
BspHI TCATGA 1 cut(s) 986
BspLI GGNNCC 1 cut(s) 208
BspMAI CTGCAG 1 cut(s) 568
BspMI ACCTGC 1 cut(s) 586
BspOI GCTAGC 1 cut(s) 162
BspPI GGATC 1 cut(s) 388
BsrBI CCGCTC 1 cut(s) 227
BsrI ACTGG 3 cut(s) 157, 274, 849
BssECI CCNNGG 3 cut(s) 163, 432, 805
BssMI GATC 1 cut(s) 393
BssNAI GTATAC 1 cut(s) 598
BssT1I CCWWGG 2 cut(s) 432, 805
Bst1107I GTATAC 1 cut(s) 598
Bst2UI CCWGG 3 cut(s) 26, 585, 690
Bst4CI ACNGT 1 cut(s) 332
BstAPI GCANNNNNTGC 1 cut(s) 871
BstC8I GCNNGC 2 cut(s) 160, 727
BstDEI CTNAG 6 cut(s) 186, 444, 524, 648, 730, 750
BstDSI CCRYGG 2 cut(s) 163, 805
BstEII GGTNACC 1 cut(s) 673
BstENI CCTNNNNNAGG 1 cut(s) 582
BstF5I GGATG 3 cut(s) 12, 346, 442
BstKTI GATC 1 cut(s) 396
BstMAI GTCTC 1 cut(s) 338
BstMBI GATC 1 cut(s) 393
BstMWI GCNNNNNNNGC 2 cut(s) 649, 871
BstNI CCWGG 3 cut(s) 26, 585, 690
BstNSI RCATGY 3 cut(s) 281, 617, 874
BstPAI GACNNNNGTC 1 cut(s) 680
BstPI GGTNACC 1 cut(s) 673
BstSCI CCNGG 3 cut(s) 24, 583, 688
BstSFI CTRYAG 2 cut(s) 426, 564
BstV1I GCAGC 7 cut(s) 3, 391, 550, 734, 784, 913, 916
BstV2I GAAGAC 2 cut(s) 138, 333
BstZ17I GTATAC 1 cut(s) 598
BsuRI GGCC 2 cut(s) 540, 593
BtgI CCRYGG 2 cut(s) 163, 805
BtsCI GGATG 3 cut(s) 12, 346, 442
BtsI GCAGTG 1 cut(s) 565
BtsIMutI CAGTG 1 cut(s) 565
BveI ACCTGC 1 cut(s) 586
Cac8I GCNNGC 2 cut(s) 160, 727
CciI TCATGA 1 cut(s) 986
Cfr13I GGNCC 1 cut(s) 692
CseI GACGC 1 cut(s) 404
CsiI ACCWGGT 1 cut(s) 583
Csp6I GTAC 5 cut(s) 628, 714, 842, 856, 868
CspCI CAANNNNNGTGG 2 cut(s) 889, 924
CviAII CATG 7 cut(s) 110, 278, 391, 614, 806, 871, 987
CviQI GTAC 5 cut(s) 628, 714, 842, 856, 868
DdeI CTNAG 6 cut(s) 186, 444, 524, 648, 730, 750
DpnI GATC 1 cut(s) 395
DpnII GATC 1 cut(s) 393
Ecl136II GAGCTC 1 cut(s) 652
Eco130I CCWWGG 2 cut(s) 432, 805
Eco24I GRGCYC 1 cut(s) 654
Eco32I GATATC 1 cut(s) 828
Eco47I GGWCC 1 cut(s) 692
Eco53kI GAGCTC 1 cut(s) 652
Eco57I CTGAAG 1 cut(s) 476
Eco91I GGTNACC 1 cut(s) 673
EcoICRI GAGCTC 1 cut(s) 652
EcoNI CCTNNNNNAGG 1 cut(s) 582
EcoO65I GGTNACC 1 cut(s) 673
EcoRII CCWGG 3 cut(s) 24, 583, 688
EcoRV GATATC 1 cut(s) 828
EcoT14I CCWWGG 2 cut(s) 432, 805
EcoT38I GRGCYC 1 cut(s) 654
ErhI CCWWGG 2 cut(s) 432, 805
FaeI CATG 7 cut(s) 113, 281, 394, 617, 809, 874, 990
FaqI GGGAC 1 cut(s) 499
FatI CATG 7 cut(s) 109, 277, 390, 613, 805, 870, 986
FblI GTMKAC 1 cut(s) 597
Fnu4HI GCNGC 7 cut(s) 17, 405, 564, 723, 798, 927, 930
FokI GGATG 3 cut(s) 19, 353, 449
FriOI GRGCYC 1 cut(s) 654
Fsp4HI GCNGC 7 cut(s) 17, 405, 564, 723, 798, 927, 930
FspBI CTAG 1 cut(s) 159
GluI GCNGC 7 cut(s) 17, 405, 564, 723, 798, 927, 930
HaeIII GGCC 2 cut(s) 540, 593
HgaI GACGC 1 cut(s) 404
Hin1II CATG 7 cut(s) 113, 281, 394, 617, 809, 874, 990
HincII GTYRAC 1 cut(s) 786
HindII GTYRAC 1 cut(s) 786
HindIII AAGCTT 2 cut(s) 741, 958
HinfI GANTC 4 cut(s) 199, 252, 359, 451
HphI GGTGA 2 cut(s) 335, 685
Hpy166II GTNNAC 3 cut(s) 275, 598, 786
Hpy188I TCNGA 7 cut(s) 372, 456, 649, 660, 733, 751, 769
Hpy188III TCNNGA 4 cut(s) 119, 256, 970, 987
Hpy8I GTNNAC 3 cut(s) 275, 598, 786
HpyAV CCTTC 3 cut(s) 451, 931, 973
HpyCH4III ACNGT 1 cut(s) 332
HpyCH4IV ACGT 1 cut(s) 106
HpyCH4V TGCA 8 cut(s) 56, 281, 512, 566, 581, 779, 865, 932
HpyF10VI GCNNNNNNNGC 2 cut(s) 649, 871
HpyF3I CTNAG 6 cut(s) 186, 444, 524, 648, 730, 750
HpySE526I ACGT 1 cut(s) 106
Hsp92II CATG 7 cut(s) 113, 281, 394, 617, 809, 874, 990
Kzo9I GATC 1 cut(s) 393
LmnI GCTCC 3 cut(s) 206, 247, 719
Lsp1109I GCAGC 7 cut(s) 3, 391, 550, 734, 784, 913, 916
LweI GCATC 1 cut(s) 331
MabI ACCWGGT 1 cut(s) 583
MaeI CTAG 1 cut(s) 159
MaeII ACGT 1 cut(s) 106
MaeIII GTNAC 4 cut(s) 70, 439, 460, 673
MalI GATC 1 cut(s) 395
MbiI CCGCTC 1 cut(s) 227
MboI GATC 1 cut(s) 393
MboII GAAGA 6 cut(s) 32, 35, 134, 143, 338, 738
MhlI GDGCHC 1 cut(s) 654
MluCI AATT 5 cut(s) 65, 168, 242, 666, 792
MlyI GAGTC 3 cut(s) 261, 368, 460
MnlI CCTC 6 cut(s) 343, 439, 519, 524, 616, 916
MseI TTAA 3 cut(s) 114, 620, 956
MslI CAYNNNNRTG 1 cut(s) 95
MspA1I CMGCKG 1 cut(s) 77
MspR9I CCNGG 3 cut(s) 26, 585, 690
Mva1269I GAATGC 2 cut(s) 56, 379
MvaI CCWGG 3 cut(s) 26, 585, 690
MwoI GCNNNNNNNGC 2 cut(s) 649, 871
NcoI CCATGG 1 cut(s) 805
NdeII GATC 1 cut(s) 393
NheI GCTAGC 1 cut(s) 158
NlaIII CATG 7 cut(s) 113, 281, 394, 617, 809, 874, 990
NlaIV GGNNCC 1 cut(s) 208
NmuCI GTSAC 2 cut(s) 70, 673
NspI RCATGY 3 cut(s) 281, 617, 874
PagI TCATGA 1 cut(s) 986
PaqCI CACCTGC 1 cut(s) 586
PctI GAATGC 2 cut(s) 56, 379
PfeI GAWTC 1 cut(s) 199
PflMI CCANNNNNTGG 1 cut(s) 881
PkrI GCNGC 7 cut(s) 18, 406, 565, 724, 799, 928, 931
PleI GAGTC 3 cut(s) 260, 367, 459
PpsI GAGTC 3 cut(s) 260, 367, 459
PshAI GACNNNNGTC 1 cut(s) 680
Psp124BI GAGCTC 1 cut(s) 654
Psp6I CCWGG 3 cut(s) 24, 583, 688
PspEI GGTNACC 1 cut(s) 673
PspGI CCWGG 3 cut(s) 24, 583, 688
PspN4I GGNNCC 1 cut(s) 208
PspPI GGNCC 1 cut(s) 692
PstI CTGCAG 1 cut(s) 568
PvuII CAGCTG 1 cut(s) 77
RsaI GTAC 5 cut(s) 629, 715, 843, 857, 869
RsaNI GTAC 5 cut(s) 628, 714, 842, 856, 868
RseI CAYNNNNRTG 1 cut(s) 95
SacI GAGCTC 1 cut(s) 654
SaqAI TTAA 3 cut(s) 114, 620, 956
SatI GCNGC 7 cut(s) 17, 405, 564, 723, 798, 927, 930
Sau3AI GATC 1 cut(s) 393
Sau96I GGNCC 1 cut(s) 692
SchI GAGTC 3 cut(s) 261, 368, 460
ScrFI CCNGG 3 cut(s) 26, 585, 690
SduI GDGCHC 1 cut(s) 654
SexAI ACCWGGT 1 cut(s) 583
SfaNI GCATC 1 cut(s) 331
SfcI CTRYAG 2 cut(s) 426, 564
SinI GGWCC 1 cut(s) 692
SmiMI CAYNNNNRTG 1 cut(s) 95
SmlI CTYRAG 1 cut(s) 335
SmoI CTYRAG 1 cut(s) 335
Sse9I AATT 5 cut(s) 65, 168, 242, 666, 792
SsiI CCGC 1 cut(s) 225
SspMI CTAG 1 cut(s) 159
SstI GAGCTC 1 cut(s) 654
StyD4I CCNGG 3 cut(s) 24, 583, 688
StyI CCWWGG 2 cut(s) 432, 805
TaaI ACNGT 1 cut(s) 332
TaiI ACGT 1 cut(s) 109
TaqI TCGA 3 cut(s) 129, 384, 916
TasI AATT 5 cut(s) 65, 168, 242, 666, 792
TatI WGTACW 3 cut(s) 841, 855, 867
TfiI GAWTC 1 cut(s) 199
Tru1I TTAA 3 cut(s) 114, 620, 956
Tru9I TTAA 3 cut(s) 114, 620, 956
TscAI CASTG 1 cut(s) 565
TseFI GTSAC 2 cut(s) 70, 673
TseI GCWGC 7 cut(s) 16, 404, 563, 722, 797, 926, 929
Tsp45I GTSAC 2 cut(s) 70, 673
TspDTI ATGAA 3 cut(s) 49, 249, 753
TspRI CASTG 1 cut(s) 565
Van91I CCANNNNNTGG 1 cut(s) 881
VpaK11BI GGWCC 1 cut(s) 692
XagI CCTNNNNNAGG 1 cut(s) 582
XapI RAATTY 1 cut(s) 65
XceI RCATGY 3 cut(s) 281, 617, 874
XmiI GTMKAC 1 cut(s) 597
XspI CTAG 1 cut(s) 159
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.