Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0007904

Physical Location & Seq

Genomic Coordinates Reverse (-)

62969010 .. 63021558

Gene Structure 52549 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG458400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGGGGCAAGTATTAGAGAAAAGATTTCCTTTGGATGCAAAAGAGTATAAGTTATATGAAGAAGTGGGTGAAGGTGTTAGTGCTAGTGTGTACAGAGCACTCTGCATACCACTTAATGAGATAGTTGCTATCAAGGTTCTTGATCAGGAAAAATGCAATAATGACCTACTCTATCAGAAAGGAATTGGGGTGACCATTGTTTGTCCTGGTCCAATAGAAACATCAAATGGTACAGGAGCAGCAATCTCAGAGAATAAAGCTTCTTCTGAAAAGCGTGTGTCATTAGAAAGGTGTGCAGAGTTGACAATAATTGCTGCCACCCATGGTCTAAAGGAAGTTTGGATATCATACCAGATTAGCTGCTGCTTTGACAACTATGGTGTTCCTCAGGGACAGTTGTTTGAATTTCAAGTCCATCTGAATAGCAATAGAGTATTGATGGGGGTGGTGAAGGGTATTAAAAATAATTGGGGTAAGAAGAACAAAGCTTGCACCAAGAAAAAGAGAAAAAAAGTTGACAAAGATGAAGGTAGAAAAAGGAAAAGAACTGAAGGTGAAAGATCAGTTGTGAATGAAGTGATTGATGATTTTGCTGATGATATTGATGGTAGCGGAAATAGAAGCAGCAAACAGGAAAATTTGCTACTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short

Protein Analysis

216

Amino Acids

24.06

Weight (kDa)

8.59

Isoelectric Point (pI)

29.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007904)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03330
fragaria_vesca	FvH4_6g00210 FvH4_6g00210 FvH4_6g00210 FvH4_6g00210
malus_domestica	MD04G1247200.v1.1
prunus_persica	Prupe.6G363500_v2.0.a1 Prupe.6G363500_v2.0.a1 Prupe.6G363500_v2.0.a1
pyrus_communis	pycom04g21790
rosa_chinensis	RchiOBHm_Chr3g0447581
rosa_laevigata	RLG00000025987
rosa_multiflora	Rmu_sc0003550.1_g000006 Rmu_sc0026794.1_g000002
rosa_roxburghii	Rroxscaffold_1G00009020 Rroxscaffold_6G00425790
rosa_rugosa	Rorug02G0603200
rosa_samantha	Rh3AG003400 Rh3BG002900 Rh3CG003200 Rh3DG003200 Rh7AG458400
rosa_wichuraiana	Rw3G000230 Rw5G027660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	612
AcsI	RAATTY	2 cut(s)	404, 637
AcuI	CTGAAG	1 cut(s)	570
AfaI	GTAC	2 cut(s)	92, 232
AgsI	TTSAA	2 cut(s)	404, 410
AjnI	CCWGG	1 cut(s)	205
AluBI	AGCT	3 cut(s)	260, 360, 488
AluI	AGCT	3 cut(s)	260, 360, 488
Alw21I	GWGCWC	1 cut(s)	100
ApeKI	GCWGC	5 cut(s)	239, 314, 360, 363, 624
ApoI	RAATTY	2 cut(s)	404, 637
AspS9I	GGNCC	1 cut(s)	209
AsuHPI	GGTGA	4 cut(s)	80, 202, 460, 566
AvaII	GGWCC	1 cut(s)	209
AxyI	CCTNAGG	1 cut(s)	387
Bbv12I	GWGCWC	1 cut(s)	100
BbvI	GCAGC	5 cut(s)	251, 301, 347, 350, 636
BccI	CCATC	3 cut(s)	423, 433, 599
BciT130I	CCWGG	1 cut(s)	207
BclI	TGATCA	1 cut(s)	142
BfaI	CTAG	1 cut(s)	84
BisI	GCNGC	5 cut(s)	240, 315, 361, 364, 625
BlsI	GCNGC	5 cut(s)	241, 316, 362, 365, 626
Bme1390I	CCNGG	1 cut(s)	207
Bme18I	GGWCC	1 cut(s)	209
BmgT120I	GGNCC	1 cut(s)	209
BmrFI	CCNGG	1 cut(s)	207
BmsI	GCATC	1 cut(s)	25
BsaJI	CCNNGG	1 cut(s)	322
Bse21I	CCTNAGG	1 cut(s)	387
BseBI	CCWGG	1 cut(s)	207
BseDI	CCNNGG	1 cut(s)	322
BseGI	GGATG	1 cut(s)	40
BseMII	CTCAG	2 cut(s)	261, 401
BseXI	GCAGC	5 cut(s)	251, 301, 347, 350, 636
BsgI	GTGCAG	1 cut(s)	315
BsiHKAI	GWGCWC	1 cut(s)	100
BslFI	GGGAC	1 cut(s)	405
BsmFI	GGGAC	1 cut(s)	405
Bsp1286I	GDGCHC	1 cut(s)	100
Bsp1407I	TGTACA	1 cut(s)	90
Bsp143I	GATC	2 cut(s)	142, 560
Bsp19I	CCATGG	1 cut(s)	322
BspACI	CCGC	1 cut(s)	612
BspCNI	CTCAG	2 cut(s)	260, 400
BsrGI	TGTACA	1 cut(s)	90
BssECI	CCNNGG	1 cut(s)	322
BssMI	GATC	2 cut(s)	142, 560
BssT1I	CCWWGG	1 cut(s)	322
Bst2UI	CCWGG	1 cut(s)	207
Bst4CI	ACNGT	2 cut(s)	396, 648
BstAUI	TGTACA	1 cut(s)	90
BstC8I	GCNNGC	1 cut(s)	490
BstDEI	CTNAG	2 cut(s)	247, 387
BstDSI	CCRYGG	1 cut(s)	322
BstEII	GGTNACC	1 cut(s)	190
BstF5I	GGATG	1 cut(s)	40
BstKTI	GATC	2 cut(s)	145, 563
BstMBI	GATC	2 cut(s)	142, 560
BstNI	CCWGG	1 cut(s)	207
BstPI	GGTNACC	1 cut(s)	190
BstSCI	CCNGG	1 cut(s)	205
BstV1I	GCAGC	5 cut(s)	251, 301, 347, 350, 636
Bsu36I	CCTNAGG	1 cut(s)	387
BtgI	CCRYGG	1 cut(s)	322
BtsCI	GGATG	1 cut(s)	40
Cac8I	GCNNGC	1 cut(s)	490
Cfr13I	GGNCC	1 cut(s)	209
Csp6I	GTAC	2 cut(s)	91, 231
CviAII	CATG	1 cut(s)	323
CviJI	RGCY	3 cut(s)	260, 360, 488
CviKI_1	RGCY	3 cut(s)	260, 360, 488
CviQI	GTAC	2 cut(s)	91, 231
DdeI	CTNAG	2 cut(s)	247, 387
DpnI	GATC	2 cut(s)	144, 562
DpnII	GATC	2 cut(s)	142, 560
Eco130I	CCWWGG	1 cut(s)	322
Eco32I	GATATC	1 cut(s)	345
Eco47I	GGWCC	1 cut(s)	209
Eco57I	CTGAAG	1 cut(s)	570
Eco81I	CCTNAGG	1 cut(s)	387
Eco91I	GGTNACC	1 cut(s)	190
EcoO65I	GGTNACC	1 cut(s)	190
EcoRII	CCWGG	1 cut(s)	205
EcoRV	GATATC	1 cut(s)	345
EcoT14I	CCWWGG	1 cut(s)	322
ErhI	CCWWGG	1 cut(s)	322
FaeI	CATG	1 cut(s)	326
FaiI	YATR	7 cut(s)	48, 55, 57, 107, 324, 349, 378
FalI	AAGNNNNNCTT	2 cut(s)	13, 45
FaqI	GGGAC	1 cut(s)	405
FatI	CATG	1 cut(s)	322
FbaI	TGATCA	1 cut(s)	142
Fnu4HI	GCNGC	5 cut(s)	240, 315, 361, 364, 625
FokI	GGATG	1 cut(s)	47
Fsp4HI	GCNGC	5 cut(s)	240, 315, 361, 364, 625
FspBI	CTAG	1 cut(s)	84
GluI	GCNGC	5 cut(s)	240, 315, 361, 364, 625
Hin1II	CATG	1 cut(s)	326
HincII	GTYRAC	2 cut(s)	303, 517
HindII	GTYRAC	2 cut(s)	303, 517
HindIII	AAGCTT	2 cut(s)	258, 486
HphI	GGTGA	4 cut(s)	80, 202, 460, 566
Hpy166II	GTNNAC	3 cut(s)	91, 303, 517
Hpy188I	TCNGA	4 cut(s)	177, 250, 268, 420
Hpy188III	TCNNGA	2 cut(s)	140, 146
Hpy8I	GTNNAC	3 cut(s)	91, 303, 517
HpyAV	CCTTC	4 cut(s)	65, 445, 521, 545
HpyCH4III	ACNGT	2 cut(s)	396, 648
HpyCH4V	TGCA	5 cut(s)	38, 105, 156, 296, 492
HpyF3I	CTNAG	2 cut(s)	247, 387
Hsp92II	CATG	1 cut(s)	326
Ksp22I	TGATCA	1 cut(s)	142
Kzo9I	GATC	2 cut(s)	142, 560
LmnI	GCTCC	1 cut(s)	236
LpnPI	CCDG	7 cut(s)	131, 192, 219, 219, 365, 374, 617
Lsp1109I	GCAGC	5 cut(s)	251, 301, 347, 350, 636
LweI	GCATC	1 cut(s)	25
MaeI	CTAG	1 cut(s)	84
MaeIII	GTNAC	1 cut(s)	190
MalI	GATC	2 cut(s)	144, 562
MboI	GATC	2 cut(s)	142, 560
MboII	GAAGA	3 cut(s)	71, 255, 490
MhlI	GDGCHC	1 cut(s)	100
MluCI	AATT	5 cut(s)	183, 309, 404, 466, 637
MnlI	CCTC	1 cut(s)	396
MseI	TTAA	2 cut(s)	114, 459
MspR9I	CCNGG	1 cut(s)	207
MvaI	CCWGG	1 cut(s)	207
NcoI	CCATGG	1 cut(s)	322
NdeII	GATC	2 cut(s)	142, 560
NlaIII	CATG	1 cut(s)	326
NmuCI	GTSAC	1 cut(s)	190
PkrI	GCNGC	5 cut(s)	241, 316, 362, 365, 626
Psp6I	CCWGG	1 cut(s)	205
PspEI	GGTNACC	1 cut(s)	190
PspGI	CCWGG	1 cut(s)	205
PspPI	GGNCC	1 cut(s)	209
RsaI	GTAC	2 cut(s)	92, 232
RsaNI	GTAC	2 cut(s)	91, 231
SaqAI	TTAA	2 cut(s)	114, 459
SatI	GCNGC	5 cut(s)	240, 315, 361, 364, 625
Sau3AI	GATC	2 cut(s)	142, 560
Sau96I	GGNCC	1 cut(s)	209
ScrFI	CCNGG	1 cut(s)	207
SduI	GDGCHC	1 cut(s)	100
SetI	ASST	9 cut(s)	76, 138, 168, 262, 293, 362, 490, 532, 556
SfaNI	GCATC	1 cut(s)	25
SinI	GGWCC	1 cut(s)	209
Sse9I	AATT	5 cut(s)	183, 309, 404, 466, 637
SsiI	CCGC	1 cut(s)	612
SspMI	CTAG	1 cut(s)	84
StyD4I	CCNGG	1 cut(s)	205
StyI	CCWWGG	1 cut(s)	322
TaaI	ACNGT	2 cut(s)	396, 648
TasI	AATT	5 cut(s)	183, 309, 404, 466, 637
TatI	WGTACW	1 cut(s)	90
Tru1I	TTAA	2 cut(s)	114, 459
Tru9I	TTAA	2 cut(s)	114, 459
TseFI	GTSAC	1 cut(s)	190
TseI	GCWGC	5 cut(s)	239, 314, 360, 363, 624
Tsp45I	GTSAC	1 cut(s)	190
TspDTI	ATGAA	3 cut(s)	72, 540, 588
VpaK11BI	GGWCC	1 cut(s)	209
XapI	RAATTY	2 cut(s)	404, 637
XspI	CTAG	1 cut(s)	84

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.