Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0026794.1

Orthogroup ID

OG0007904

Physical Location & Seq

Genomic Coordinates Forward (+)

1038 .. 4695

Gene Structure 3658 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0026794.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 996 bp

atggcgatggtggtggtgctattcttggtttctctgcttcttcttctcttgtttgctttaatcaaatttaccacagctgatggtgatttcactttgatgtccaaacgccatgttaaccgccacgaaattgaagacaaagttgtttggataactggtgctagccgtggaattggtgatttcactttgatgtccaaacgccatgttaaccgccacgaaattgaagacaaagttgtttggataactggtgctagccgtggaattggggaggttcttgctaagcaacttgcaaatttgggagctaagctcattatttccgcccgtaatgaagctgaattggagcgagtcaagaaacaacttactggtaaacatgcacctgatggtgtgaaagttttgccattggatttggcttctggtgaagattgtctcaaggatgttgtagagaaagcagagtcattctttccaaatgctggtgttgattacatgatccataatgctgcttttgagcgtcctaaaactacagcattggatgttactgaggagagtctaaaggtaactttcaatgtcaatgttcttgggacaataacgctgacccggctactggcaccttacatgctgaggcgagggaagggccattttgttgtgatgagcagtgctgcaggaaagacacctgcaccaggtcaggccgtatactctgcctctaaacatgccttaaatgggtactttcacaccttgcgttccgagctttatcagaaaggaattggggtgaccattgtttgtcctggtccaatagaaacatcaaatggtacaggagcagcaagctcagaaaataaagcttcttctgagaagcgtgtgtcatcagaaaggtgtgcagagttgacaataattgctgccacccatggtctaaaggaagtttggatatcataccaggtattgttattggtatattcactatattgtatagccatgaaggatcagttggtaaggcctagatggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short

Protein Analysis

331

Amino Acids

36.32

Weight (kDa)

9.13

Isoelectric Point (pI)

39.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007904)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03330
fragaria_vesca	FvH4_6g00210 FvH4_6g00210 FvH4_6g00210 FvH4_6g00210
malus_domestica	MD04G1247200.v1.1
prunus_persica	Prupe.6G363500_v2.0.a1 Prupe.6G363500_v2.0.a1 Prupe.6G363500_v2.0.a1
pyrus_communis	pycom04g21790
rosa_chinensis	RchiOBHm_Chr3g0447581
rosa_laevigata	RLG00000025987
rosa_multiflora	Rmu_sc0003550.1_g000006 Rmu_sc0026794.1_g000002
rosa_roxburghii	Rroxscaffold_1G00009020 Rroxscaffold_6G00425790
rosa_rugosa	Rorug02G0603200
rosa_samantha	Rh3AG003400 Rh3BG002900 Rh3CG003200 Rh3DG003200 Rh7AG458400
rosa_wichuraiana	Rw3G000230 Rw5G027660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	676
Acc36I	ACCTGC	1 cut(s)	676
AccB1I	GGYRCC	1 cut(s)	601
AccB7I	CCANNNNNTGG	1 cut(s)	467
AccI	GTMKAC	1 cut(s)	687
AciI	CCGC	3 cut(s)	118, 208, 315
AclWI	GGATC	2 cut(s)	478, 978
AcsI	RAATTY	2 cut(s)	65, 289
AfaI	GTAC	2 cut(s)	719, 805
AfiI	CCNNNNNNNGG	4 cut(s)	467, 598, 674, 714
AgsI	TTSAA	3 cut(s)	131, 221, 559
AjnI	CCWGG	3 cut(s)	673, 778, 924
AjuI	GAANNNNNNNTTGG	2 cut(s)	959, 991
AluBI	AGCT	7 cut(s)	77, 299, 304, 329, 742, 819, 833
AluI	AGCT	7 cut(s)	77, 299, 304, 329, 742, 819, 833
Alw26I	GTCTC	1 cut(s)	428
AlwI	GGATC	2 cut(s)	478, 978
AoxI	GGCC	3 cut(s)	628, 681, 983
ApeKI	GCWGC	4 cut(s)	494, 653, 812, 887
ApoI	RAATTY	2 cut(s)	65, 289
AspS9I	GGNCC	2 cut(s)	628, 782
AsuC2I	CCSGG	1 cut(s)	592
AsuHPI	GGTGA	4 cut(s)	95, 185, 425, 775
AsuNHI	GCTAGC	2 cut(s)	158, 248
AvaII	GGWCC	1 cut(s)	782
BanI	GGYRCC	1 cut(s)	601
BbsI	GAAGAC	2 cut(s)	138, 228
BbvCI	CCTCAGC	1 cut(s)	614
BbvI	GCAGC	4 cut(s)	481, 640, 824, 874
BccI	CCATC	3 cut(s)	74, 371, 984
BceAI	ACGGC	3 cut(s)	147, 237, 668
BciT130I	CCWGG	3 cut(s)	675, 780, 926
BcnI	CCSGG	1 cut(s)	592
BcoDI	GTCTC	1 cut(s)	428
BfaI	CTAG	3 cut(s)	159, 249, 987
BfmI	CTRYAG	2 cut(s)	516, 654
BfuAI	ACCTGC	1 cut(s)	676
BisI	GCNGC	4 cut(s)	495, 654, 813, 888
BlpI	GCTNAGC	2 cut(s)	276, 300
BlsI	GCNGC	4 cut(s)	496, 655, 814, 889
Bme1390I	CCNGG	4 cut(s)	592, 675, 780, 926
Bme18I	GGWCC	1 cut(s)	782
BmgT120I	GGNCC	2 cut(s)	628, 782
BmiI	GGNNCC	1 cut(s)	603
BmrFI	CCNGG	4 cut(s)	592, 675, 780, 926
BmtI	GCTAGC	2 cut(s)	162, 252
BpiI	GAAGAC	2 cut(s)	138, 228
BplI	GAGNNNNNCTC	2 cut(s)	288, 320
Bpu10I	CCTNAGC	1 cut(s)	614
Bpu1102I	GCTNAGC	2 cut(s)	276, 300
BpuEI	CTTGAG	1 cut(s)	410
BpuMI	CCSGG	1 cut(s)	592
BsaJI	CCNNGG	3 cut(s)	163, 253, 895
Bsc4I	CCNNNNNNNGG	4 cut(s)	467, 598, 674, 714
Bse1I	ACTGG	4 cut(s)	157, 247, 364, 603
BseBI	CCWGG	3 cut(s)	675, 780, 926
BseDI	CCNNGG	3 cut(s)	163, 253, 895
BseGI	GGATG	2 cut(s)	436, 532
BseLI	CCNNNNNNNGG	4 cut(s)	467, 598, 674, 714
BseMII	CTCAG	4 cut(s)	525, 605, 831, 834
BseNI	ACTGG	4 cut(s)	157, 247, 364, 603
BseRI	GAGGAG	1 cut(s)	551
BseXI	GCAGC	4 cut(s)	481, 640, 824, 874
BsgI	GTGCAG	2 cut(s)	654, 888
BshFI	GGCC	3 cut(s)	630, 683, 985
BshNI	GGYRCC	1 cut(s)	601
BsiSI	CCGG	1 cut(s)	592
BslFI	GGGAC	1 cut(s)	589
BslI	CCNNNNNNNGG	4 cut(s)	467, 598, 674, 714
BsmAI	GTCTC	1 cut(s)	428
BsmFI	GGGAC	1 cut(s)	589
BsnI	GGCC	3 cut(s)	630, 683, 985
Bsp143I	GATC	2 cut(s)	483, 970
Bsp1720I	GCTNAGC	2 cut(s)	276, 300
Bsp19I	CCATGG	1 cut(s)	895
BspACI	CCGC	3 cut(s)	118, 208, 315
BspANI	GGCC	3 cut(s)	630, 683, 985
BspCNI	CTCAG	4 cut(s)	526, 606, 832, 833
BspLI	GGNNCC	1 cut(s)	603
BspMAI	CTGCAG	1 cut(s)	658
BspMI	ACCTGC	1 cut(s)	676
BspOI	GCTAGC	2 cut(s)	162, 252
BspPI	GGATC	2 cut(s)	478, 978
BspT107I	GGYRCC	1 cut(s)	601
BsrI	ACTGG	4 cut(s)	157, 247, 364, 603
BssECI	CCNNGG	3 cut(s)	163, 253, 895
BssMI	GATC	2 cut(s)	483, 970
BssNAI	GTATAC	1 cut(s)	688
BssT1I	CCWWGG	1 cut(s)	895
Bst1107I	GTATAC	1 cut(s)	688
Bst2UI	CCWGG	3 cut(s)	675, 780, 926
BstC8I	GCNNGC	3 cut(s)	160, 250, 817
BstDEI	CTNAG	6 cut(s)	276, 300, 534, 614, 820, 840
BstDSI	CCRYGG	3 cut(s)	163, 253, 895
BstEII	GGTNACC	1 cut(s)	763
BstENI	CCTNNNNNAGG	1 cut(s)	672
BstF5I	GGATG	2 cut(s)	436, 532
BstKTI	GATC	2 cut(s)	486, 973
BstMAI	GTCTC	1 cut(s)	428
BstMBI	GATC	2 cut(s)	483, 970
BstMWI	GCNNNNNNNGC	2 cut(s)	592, 739
BstNI	CCWGG	3 cut(s)	675, 780, 926
BstNSI	RCATGY	3 cut(s)	371, 613, 707
BstPI	GGTNACC	1 cut(s)	763
BstSCI	CCNGG	4 cut(s)	590, 673, 778, 924
BstSFI	CTRYAG	2 cut(s)	516, 654
BstV1I	GCAGC	4 cut(s)	481, 640, 824, 874
BstV2I	GAAGAC	2 cut(s)	138, 228
BstZ17I	GTATAC	1 cut(s)	688
BsuRI	GGCC	3 cut(s)	630, 683, 985
BtgI	CCRYGG	3 cut(s)	163, 253, 895
BtgZI	GCGATG	1 cut(s)	20
BtsCI	GGATG	2 cut(s)	436, 532
BtsI	GCAGTG	1 cut(s)	655
BtsIMutI	CAGTG	1 cut(s)	655
BveI	ACCTGC	1 cut(s)	676
Cac8I	GCNNGC	3 cut(s)	160, 250, 817
Cfr13I	GGNCC	2 cut(s)	628, 782
CseI	GACGC	1 cut(s)	494
CsiI	ACCWGGT	2 cut(s)	673, 924
Csp6I	GTAC	2 cut(s)	718, 804
CviAII	CATG	8 cut(s)	110, 200, 368, 481, 610, 704, 896, 964
CviQI	GTAC	2 cut(s)	718, 804
DdeI	CTNAG	6 cut(s)	276, 300, 534, 614, 820, 840
DpnI	GATC	2 cut(s)	485, 972
DpnII	GATC	2 cut(s)	483, 970
EciI	GGCGGA	1 cut(s)	304
Eco130I	CCWWGG	1 cut(s)	895
Eco147I	AGGCCT	1 cut(s)	985
Eco32I	GATATC	1 cut(s)	918
Eco47I	GGWCC	1 cut(s)	782
Eco91I	GGTNACC	1 cut(s)	763
EcoNI	CCTNNNNNAGG	1 cut(s)	672
EcoO65I	GGTNACC	1 cut(s)	763
EcoRII	CCWGG	3 cut(s)	673, 778, 924
EcoRV	GATATC	1 cut(s)	918
EcoT14I	CCWWGG	1 cut(s)	895
ErhI	CCWWGG	1 cut(s)	895
FaeI	CATG	8 cut(s)	113, 203, 371, 484, 613, 707, 899, 967
FaqI	GGGAC	1 cut(s)	589
FatI	CATG	8 cut(s)	109, 199, 367, 480, 609, 703, 895, 963
FblI	GTMKAC	1 cut(s)	687
Fnu4HI	GCNGC	4 cut(s)	495, 654, 813, 888
FokI	GGATG	2 cut(s)	443, 539
Fsp4HI	GCNGC	4 cut(s)	495, 654, 813, 888
FspBI	CTAG	3 cut(s)	159, 249, 987
GluI	GCNGC	4 cut(s)	495, 654, 813, 888
HaeIII	GGCC	3 cut(s)	630, 683, 985
HapII	CCGG	1 cut(s)	592
HgaI	GACGC	1 cut(s)	494
Hin1II	CATG	8 cut(s)	113, 203, 371, 484, 613, 707, 899, 967
HincII	GTYRAC	3 cut(s)	115, 205, 876
HindII	GTYRAC	3 cut(s)	115, 205, 876
HindIII	AAGCTT	1 cut(s)	831
HinfI	GANTC	3 cut(s)	342, 449, 541
HpaI	GTTAAC	2 cut(s)	115, 205
HpaII	CCGG	1 cut(s)	592
HphI	GGTGA	4 cut(s)	95, 185, 425, 775
Hpy166II	GTNNAC	5 cut(s)	115, 205, 365, 688, 876
Hpy188I	TCNGA	5 cut(s)	739, 750, 823, 841, 859
Hpy188III	TCNNGA	1 cut(s)	346
Hpy8I	GTNNAC	5 cut(s)	115, 205, 365, 688, 876
HpyAV	CCTTC	2 cut(s)	619, 961
HpyCH4V	TGCA	5 cut(s)	287, 371, 656, 671, 869
HpyF10VI	GCNNNNNNNGC	2 cut(s)	592, 739
HpyF3I	CTNAG	6 cut(s)	276, 300, 534, 614, 820, 840
Hsp92II	CATG	8 cut(s)	113, 203, 371, 484, 613, 707, 899, 967
KspAI	GTTAAC	2 cut(s)	115, 205
Kzo9I	GATC	2 cut(s)	483, 970
LmnI	GCTCC	3 cut(s)	296, 337, 809
Lsp1109I	GCAGC	4 cut(s)	481, 640, 824, 874
MabI	ACCWGGT	2 cut(s)	673, 924
MaeI	CTAG	3 cut(s)	159, 249, 987
MaeIII	GTNAC	3 cut(s)	529, 550, 763
MalI	GATC	2 cut(s)	485, 972
MboI	GATC	2 cut(s)	483, 970
MboII	GAAGA	6 cut(s)	32, 35, 143, 233, 428, 828
MluCI	AATT	9 cut(s)	65, 126, 168, 216, 258, 289, 332, 756, 882
MlyI	GAGTC	3 cut(s)	351, 458, 550
MnlI	CCTC	5 cut(s)	259, 529, 609, 614, 706
MseI	TTAA	4 cut(s)	59, 114, 204, 710
MslI	CAYNNNNRTG	2 cut(s)	95, 185
MspA1I	CMGCKG	1 cut(s)	77
MspI	CCGG	1 cut(s)	592
MspR9I	CCNGG	4 cut(s)	592, 675, 780, 926
MvaI	CCWGG	3 cut(s)	675, 780, 926
MwoI	GCNNNNNNNGC	2 cut(s)	592, 739
NciI	CCSGG	1 cut(s)	592
NcoI	CCATGG	1 cut(s)	895
NdeII	GATC	2 cut(s)	483, 970
NheI	GCTAGC	2 cut(s)	158, 248
NlaIII	CATG	8 cut(s)	113, 203, 371, 484, 613, 707, 899, 967
NlaIV	GGNNCC	1 cut(s)	603
NmuCI	GTSAC	1 cut(s)	763
NspI	RCATGY	3 cut(s)	371, 613, 707
PaqCI	CACCTGC	1 cut(s)	676
PceI	AGGCCT	1 cut(s)	985
PflMI	CCANNNNNTGG	1 cut(s)	467
PkrI	GCNGC	4 cut(s)	496, 655, 814, 889
PleI	GAGTC	3 cut(s)	350, 457, 549
PpsI	GAGTC	3 cut(s)	350, 457, 549
Psp6I	CCWGG	3 cut(s)	673, 778, 924
PspEI	GGTNACC	1 cut(s)	763
PspGI	CCWGG	3 cut(s)	673, 778, 924
PspN4I	GGNNCC	1 cut(s)	603
PspPI	GGNCC	2 cut(s)	628, 782
PstI	CTGCAG	1 cut(s)	658
PvuII	CAGCTG	1 cut(s)	77
RsaI	GTAC	2 cut(s)	719, 805
RsaNI	GTAC	2 cut(s)	718, 804
RseI	CAYNNNNRTG	2 cut(s)	95, 185
SaqAI	TTAA	4 cut(s)	59, 114, 204, 710
SatI	GCNGC	4 cut(s)	495, 654, 813, 888
Sau3AI	GATC	2 cut(s)	483, 970
Sau96I	GGNCC	2 cut(s)	628, 782
SchI	GAGTC	3 cut(s)	351, 458, 550
ScrFI	CCNGG	4 cut(s)	592, 675, 780, 926
SexAI	ACCWGGT	2 cut(s)	673, 924
SfcI	CTRYAG	2 cut(s)	516, 654
SinI	GGWCC	1 cut(s)	782
SmiMI	CAYNNNNRTG	2 cut(s)	95, 185
SmlI	CTYRAG	1 cut(s)	425
SmoI	CTYRAG	1 cut(s)	425
Sse9I	AATT	9 cut(s)	65, 126, 168, 216, 258, 289, 332, 756, 882
SseBI	AGGCCT	1 cut(s)	985
SsiI	CCGC	3 cut(s)	118, 208, 315
SspMI	CTAG	3 cut(s)	159, 249, 987
StuI	AGGCCT	1 cut(s)	985
StyD4I	CCNGG	4 cut(s)	590, 673, 778, 924
StyI	CCWWGG	1 cut(s)	895
TasI	AATT	9 cut(s)	65, 126, 168, 216, 258, 289, 332, 756, 882
Tru1I	TTAA	4 cut(s)	59, 114, 204, 710
Tru9I	TTAA	4 cut(s)	59, 114, 204, 710
TscAI	CASTG	1 cut(s)	655
TseFI	GTSAC	1 cut(s)	763
TseI	GCWGC	4 cut(s)	494, 653, 812, 887
Tsp45I	GTSAC	1 cut(s)	763
TspDTI	ATGAA	2 cut(s)	339, 980
TspRI	CASTG	1 cut(s)	655
Van91I	CCANNNNNTGG	1 cut(s)	467
VpaK11BI	GGWCC	1 cut(s)	782
XagI	CCTNNNNNAGG	1 cut(s)	672
XapI	RAATTY	2 cut(s)	65, 289
XceI	RCATGY	3 cut(s)	371, 613, 707
XmiI	GTMKAC	1 cut(s)	687
XspI	CTAG	3 cut(s)	159, 249, 987

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.