Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0007904

Physical Location & Seq

Genomic Coordinates Forward (+)

30543312 .. 30547625

Gene Structure 4314 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G363500.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGGTGGTGGTGCTGGTGGTCTTCATTTCTTTGTTTCTCCTTCTTTTCCTCTTTCTATCAATCAAATTTGCCACAGCTGATGGGGATTTTACTTTGATGTCCAAACGCTCTGTAAAGCGCGACCAAATTGAAGATAAAGTTGTTTGGATAACTGGTGCTAGCCGTGGAATTGGGGAGGTTCTTGCTAAGCAACTTGCAAATTTGGGGGCTAAGCTCATTATTTCTGCACGTAATGAAGCTGAATTGGAGCGAGTCAAGAAACAACTGACTGGTAAACATGCACCTGATGGCGTAAAGGTTTTGCCATTGGATTTGGCATCTGGTGAAGATTGTCTCAGGGATGCTGTAGAGAAAGCAGAGTCATTCTTTCTTAATGCTGGTGTTGATTTTATGATCCACAATGCAGCTATCGAGCGTCCTAAAACTACGGCTTTGGATGTTACTGAGGAGAGTCTGAAGTCAACATTCAATGTCAATGTTCTTGGGACAATAATGCTTACACGGTTACTAGCACCTTACATGCTGAGGCGGGGGAAGGGACATTTTGTCGTGATGAGCAGTGCTGCAGGAAAGACACCTGCACCAGGTCAGGCCGTATACTCTGCCTCTAAACATGCATTAAATGGGTACTTTCACACATTGCGCTCCGAGCTCTATCAGAAAGGAATCAGGGTGACCATTGTTTGTCCTGGGCCAATAGAAACATCAACTGGTTCTGGAGCAGCAAGCTCAGAAAATAAAGCTTCTTCTGAGAAGCGTGTGTCATCAGAAAGGTGTGCAGAGTTGACGATAGTTGCTGCCACCCATTGTCTGAAGGAAGTTTGGATATCGTACCAGCCTGTGCTGACTGTAATGTACTTGGTGCAATACGTGCCAACTGTTGGTTATTGGCTCATGGACAAGATTGGTGGGAATCGAGTCGAAGCAGCTGCACGGAAGGGCAACACCTACTCAATTAGCTTACTGTTTGGGAAAAAGAAGGCATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short

Protein Analysis

330

Amino Acids

35.83

Weight (kDa)

9.42

Isoelectric Point (pI)

35.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007904)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03330
fragaria_vesca	FvH4_6g00210 FvH4_6g00210 FvH4_6g00210 FvH4_6g00210
malus_domestica	MD04G1247200.v1.1
prunus_persica	Prupe.6G363500_v2.0.a1 Prupe.6G363500_v2.0.a1 Prupe.6G363500_v2.0.a1
pyrus_communis	pycom04g21790
rosa_chinensis	RchiOBHm_Chr3g0447581
rosa_laevigata	RLG00000025987
rosa_multiflora	Rmu_sc0003550.1_g000006 Rmu_sc0026794.1_g000002
rosa_roxburghii	Rroxscaffold_1G00009020 Rroxscaffold_6G00425790
rosa_rugosa	Rorug02G0603200
rosa_samantha	Rh3AG003400 Rh3BG002900 Rh3CG003200 Rh3DG003200 Rh7AG458400
rosa_wichuraiana	Rw3G000230 Rw5G027660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	586
Acc36I	ACCTGC	1 cut(s)	586
AccB7I	CCANNNNNTGG	1 cut(s)	881
AccI	GTMKAC	1 cut(s)	597
AccII	CGCG	1 cut(s)	120
AciI	CCGC	1 cut(s)	529
AclWI	GGATC	1 cut(s)	388
AcsI	RAATTY	2 cut(s)	65, 199
AcuI	CTGAAG	2 cut(s)	476, 833
AfaI	GTAC	3 cut(s)	629, 833, 857
AfiI	CCNNNNNNNGG	2 cut(s)	584, 881
AgsI	TTSAA	2 cut(s)	131, 469
AhdI	GACNNNNNGTC	1 cut(s)	545
AjnI	CCWGG	2 cut(s)	583, 688
AluBI	AGCT	9 cut(s)	77, 214, 239, 407, 652, 729, 743, 929, 960
AluI	AGCT	9 cut(s)	77, 214, 239, 407, 652, 729, 743, 929, 960
Alw21I	GWGCWC	1 cut(s)	654
Alw26I	GTCTC	1 cut(s)	338
AlwI	GGATC	1 cut(s)	388
AoxI	GGCC	2 cut(s)	591, 692
ApeKI	GCWGC	6 cut(s)	404, 563, 722, 797, 926, 929
ApoI	RAATTY	2 cut(s)	65, 199
AspLEI	GCGC	2 cut(s)	120, 645
AspS9I	GGNCC	1 cut(s)	692
AsuHPI	GGTGA	2 cut(s)	335, 685
AsuNHI	GCTAGC	1 cut(s)	158
BanII	GRGCYC	1 cut(s)	654
BbsI	GAAGAC	1 cut(s)	13
Bbv12I	GWGCWC	1 cut(s)	654
BbvCI	CCTCAGC	1 cut(s)	524
BbvI	GCAGC	6 cut(s)	416, 550, 734, 784, 916, 938
BccI	CCATC	2 cut(s)	74, 281
BceAI	ACGGC	3 cut(s)	147, 444, 578
BcgI	CGANNNNNNTGC	2 cut(s)	911, 945
BciT130I	CCWGG	2 cut(s)	585, 690
BcoDI	GTCTC	1 cut(s)	338
BfaI	CTAG	2 cut(s)	159, 509
BfmI	CTRYAG	2 cut(s)	345, 564
BfuAI	ACCTGC	1 cut(s)	586
BisI	GCNGC	6 cut(s)	405, 564, 723, 798, 927, 930
BlpI	GCTNAGC	2 cut(s)	186, 210
BlsI	GCNGC	6 cut(s)	406, 565, 724, 799, 928, 931
Bme1390I	CCNGG	2 cut(s)	585, 690
BmeRI	GACNNNNNGTC	1 cut(s)	545
BmgT120I	GGNCC	1 cut(s)	692
BmrFI	CCNGG	2 cut(s)	585, 690
BmsI	GCATC	2 cut(s)	326, 331
BmtI	GCTAGC	1 cut(s)	162
BpiI	GAAGAC	1 cut(s)	13
BpmI	CTGGAG	1 cut(s)	738
Bpu10I	CCTNAGC	1 cut(s)	524
Bpu1102I	GCTNAGC	2 cut(s)	186, 210
BsaAI	YACGTR	2 cut(s)	230, 871
BsaJI	CCNNGG	2 cut(s)	163, 689
Bsc4I	CCNNNNNNNGG	2 cut(s)	584, 881
Bse1I	ACTGG	3 cut(s)	157, 274, 715
Bse3DI	GCAATG	1 cut(s)	638
BseBI	CCWGG	2 cut(s)	585, 690
BseDI	CCNNGG	2 cut(s)	163, 689
BseGI	GGATG	2 cut(s)	346, 442
BseLI	CCNNNNNNNGG	2 cut(s)	584, 881
BseMI	GCAATG	1 cut(s)	638
BseMII	CTCAG	5 cut(s)	349, 435, 515, 741, 744
BseNI	ACTGG	3 cut(s)	157, 274, 715
BseRI	GAGGAG	1 cut(s)	461
BseXI	GCAGC	6 cut(s)	416, 550, 734, 784, 916, 938
BsgI	GTGCAG	4 cut(s)	210, 564, 798, 915
Bsh1236I	CGCG	1 cut(s)	120
BshFI	GGCC	2 cut(s)	593, 694
BsiHKAI	GWGCWC	1 cut(s)	654
BslFI	GGGAC	2 cut(s)	499, 552
BslI	CCNNNNNNNGG	2 cut(s)	584, 881
BsmAI	GTCTC	1 cut(s)	338
BsmFI	GGGAC	2 cut(s)	499, 552
BsnI	GGCC	2 cut(s)	593, 694
Bsp1286I	GDGCHC	1 cut(s)	654
Bsp143I	GATC	1 cut(s)	393
Bsp1720I	GCTNAGC	2 cut(s)	186, 210
BspACI	CCGC	1 cut(s)	529
BspANI	GGCC	2 cut(s)	593, 694
BspCNI	CTCAG	5 cut(s)	348, 436, 516, 742, 743
BspFNI	CGCG	1 cut(s)	120
BspHI	TCATGA	1 cut(s)	986
BspMAI	CTGCAG	1 cut(s)	568
BspMI	ACCTGC	1 cut(s)	586
BspOI	GCTAGC	1 cut(s)	162
BspPI	GGATC	1 cut(s)	388
BsrDI	GCAATG	1 cut(s)	638
BsrI	ACTGG	3 cut(s)	157, 274, 715
BssECI	CCNNGG	2 cut(s)	163, 689
BssMI	GATC	1 cut(s)	393
BssNAI	GTATAC	1 cut(s)	598
Bst1107I	GTATAC	1 cut(s)	598
Bst2UI	CCWGG	2 cut(s)	585, 690
Bst4CI	ACNGT	4 cut(s)	504, 850, 880, 966
BstAPI	GCANNNNNTGC	1 cut(s)	871
BstBAI	YACGTR	2 cut(s)	230, 871
BstC8I	GCNNGC	2 cut(s)	160, 727
BstDEI	CTNAG	7 cut(s)	186, 210, 335, 444, 524, 730, 750
BstDSI	CCRYGG	1 cut(s)	163
BstEII	GGTNACC	1 cut(s)	673
BstENI	CCTNNNNNAGG	1 cut(s)	582
BstF5I	GGATG	2 cut(s)	346, 442
BstFNI	CGCG	1 cut(s)	120
BstHHI	GCGC	2 cut(s)	120, 645
BstKTI	GATC	1 cut(s)	396
BstMAI	GTCTC	1 cut(s)	338
BstMBI	GATC	1 cut(s)	393
BstMWI	GCNNNNNNNGC	2 cut(s)	649, 871
BstNI	CCWGG	2 cut(s)	585, 690
BstNSI	RCATGY	3 cut(s)	281, 523, 617
BstPI	GGTNACC	1 cut(s)	673
BstSCI	CCNGG	2 cut(s)	583, 688
BstSFI	CTRYAG	2 cut(s)	345, 564
BstUI	CGCG	1 cut(s)	120
BstV1I	GCAGC	6 cut(s)	416, 550, 734, 784, 916, 938
BstV2I	GAAGAC	1 cut(s)	13
BstZ17I	GTATAC	1 cut(s)	598
BsuRI	GGCC	2 cut(s)	593, 694
BtgI	CCRYGG	1 cut(s)	163
BtsCI	GGATG	2 cut(s)	346, 442
BtsI	GCAGTG	1 cut(s)	565
BtsIMutI	CAGTG	1 cut(s)	565
BveI	ACCTGC	1 cut(s)	586
Cac8I	GCNNGC	2 cut(s)	160, 727
CciI	TCATGA	1 cut(s)	986
CfoI	GCGC	2 cut(s)	120, 645
Cfr13I	GGNCC	1 cut(s)	692
CseI	GACGC	1 cut(s)	404
CsiI	ACCWGGT	1 cut(s)	583
Csp6I	GTAC	3 cut(s)	628, 832, 856
CspCI	CAANNNNNGTGG	2 cut(s)	889, 924
CviAII	CATG	5 cut(s)	278, 520, 614, 895, 987
CviQI	GTAC	3 cut(s)	628, 832, 856
DdeI	CTNAG	7 cut(s)	186, 210, 335, 444, 524, 730, 750
DpnI	GATC	1 cut(s)	395
DpnII	GATC	1 cut(s)	393
DriI	GACNNNNNGTC	1 cut(s)	545
Eam1105I	GACNNNNNGTC	1 cut(s)	545
Ecl136II	GAGCTC	1 cut(s)	652
Eco24I	GRGCYC	1 cut(s)	654
Eco32I	GATATC	1 cut(s)	828
Eco53kI	GAGCTC	1 cut(s)	652
Eco57I	CTGAAG	2 cut(s)	476, 833
Eco91I	GGTNACC	1 cut(s)	673
EcoICRI	GAGCTC	1 cut(s)	652
EcoNI	CCTNNNNNAGG	1 cut(s)	582
EcoO65I	GGTNACC	1 cut(s)	673
EcoRII	CCWGG	2 cut(s)	583, 688
EcoRV	GATATC	1 cut(s)	828
EcoT22I	ATGCAT	1 cut(s)	619
EcoT38I	GRGCYC	1 cut(s)	654
FaeI	CATG	5 cut(s)	281, 523, 617, 898, 990
FaiI	YATR	7 cut(s)	279, 392, 521, 598, 615, 896, 988
FaqI	GGGAC	2 cut(s)	499, 552
FatI	CATG	5 cut(s)	277, 519, 613, 894, 986
FauI	CCCGC	1 cut(s)	522
FblI	GTMKAC	1 cut(s)	597
Fnu4HI	GCNGC	6 cut(s)	405, 564, 723, 798, 927, 930
FokI	GGATG	2 cut(s)	353, 449
FriOI	GRGCYC	1 cut(s)	654
Fsp4HI	GCNGC	6 cut(s)	405, 564, 723, 798, 927, 930
FspBI	CTAG	2 cut(s)	159, 509
GlaI	GCGC	2 cut(s)	119, 644
GluI	GCNGC	6 cut(s)	405, 564, 723, 798, 927, 930
GsuI	CTGGAG	1 cut(s)	738
HaeIII	GGCC	2 cut(s)	593, 694
HgaI	GACGC	1 cut(s)	404
HhaI	GCGC	2 cut(s)	120, 645
Hin1II	CATG	5 cut(s)	281, 523, 617, 898, 990
Hin6I	GCGC	2 cut(s)	118, 643
HinP1I	GCGC	2 cut(s)	118, 643
HincII	GTYRAC	2 cut(s)	462, 786
HindII	GTYRAC	2 cut(s)	462, 786
HindIII	AAGCTT	1 cut(s)	741
HinfI	GANTC	6 cut(s)	252, 359, 451, 666, 913, 918
HphI	GGTGA	2 cut(s)	335, 685
Hpy166II	GTNNAC	4 cut(s)	275, 462, 598, 786
Hpy188I	TCNGA	7 cut(s)	456, 649, 660, 733, 751, 769, 813
Hpy188III	TCNNGA	4 cut(s)	256, 550, 717, 987
Hpy8I	GTNNAC	4 cut(s)	275, 462, 598, 786
HpyAV	CCTTC	5 cut(s)	50, 529, 808, 931, 973
HpyCH4III	ACNGT	4 cut(s)	504, 850, 880, 966
HpyCH4IV	ACGT	2 cut(s)	229, 870
HpyF10VI	GCNNNNNNNGC	2 cut(s)	649, 871
HpyF3I	CTNAG	7 cut(s)	186, 210, 335, 444, 524, 730, 750
HpySE526I	ACGT	2 cut(s)	229, 870
Hsp92II	CATG	5 cut(s)	281, 523, 617, 898, 990
HspAI	GCGC	2 cut(s)	118, 643
Kzo9I	GATC	1 cut(s)	393
LmnI	GCTCC	3 cut(s)	247, 650, 719
Lsp1109I	GCAGC	6 cut(s)	416, 550, 734, 784, 916, 938
LweI	GCATC	2 cut(s)	326, 331
MabI	ACCWGGT	1 cut(s)	583
MaeI	CTAG	2 cut(s)	159, 509
MaeII	ACGT	2 cut(s)	229, 870
MaeIII	GTNAC	3 cut(s)	439, 504, 673
MalI	GATC	1 cut(s)	395
MboI	GATC	1 cut(s)	393
MboII	GAAGA	4 cut(s)	13, 143, 338, 738
MhlI	GDGCHC	1 cut(s)	654
MluCI	AATT	6 cut(s)	65, 126, 168, 199, 242, 954
MlyI	GAGTC	4 cut(s)	261, 368, 460, 927
MnlI	CCTC	5 cut(s)	59, 169, 439, 519, 616
Mph1103I	ATGCAT	1 cut(s)	619
MseI	TTAA	2 cut(s)	372, 620
MspA1I	CMGCKG	2 cut(s)	77, 929
MspR9I	CCNGG	2 cut(s)	585, 690
MvaI	CCWGG	2 cut(s)	585, 690
MvnI	CGCG	1 cut(s)	120
MwoI	GCNNNNNNNGC	2 cut(s)	649, 871
NdeII	GATC	1 cut(s)	393
NheI	GCTAGC	1 cut(s)	158
NlaIII	CATG	5 cut(s)	281, 523, 617, 898, 990
NmuCI	GTSAC	1 cut(s)	673
NsiI	ATGCAT	1 cut(s)	619
NspI	RCATGY	3 cut(s)	281, 523, 617
PagI	TCATGA	1 cut(s)	986
PaqCI	CACCTGC	1 cut(s)	586
PfeI	GAWTC	2 cut(s)	666, 913
PflMI	CCANNNNNTGG	1 cut(s)	881
PkrI	GCNGC	6 cut(s)	406, 565, 724, 799, 928, 931
PleI	GAGTC	4 cut(s)	260, 367, 459, 926
PpsI	GAGTC	4 cut(s)	260, 367, 459, 926
Ppu21I	YACGTR	2 cut(s)	230, 871
Psp124BI	GAGCTC	1 cut(s)	654
Psp6I	CCWGG	2 cut(s)	583, 688
PspEI	GGTNACC	1 cut(s)	673
PspGI	CCWGG	2 cut(s)	583, 688
PspPI	GGNCC	1 cut(s)	692
PstI	CTGCAG	1 cut(s)	568
PvuII	CAGCTG	2 cut(s)	77, 929
RsaI	GTAC	3 cut(s)	629, 833, 857
RsaNI	GTAC	3 cut(s)	628, 832, 856
SacI	GAGCTC	1 cut(s)	654
SaqAI	TTAA	2 cut(s)	372, 620
SatI	GCNGC	6 cut(s)	405, 564, 723, 798, 927, 930
Sau3AI	GATC	1 cut(s)	393
Sau96I	GGNCC	1 cut(s)	692
SchI	GAGTC	4 cut(s)	261, 368, 460, 927
ScrFI	CCNGG	2 cut(s)	585, 690
SduI	GDGCHC	1 cut(s)	654
SexAI	ACCWGGT	1 cut(s)	583
SfaNI	GCATC	2 cut(s)	326, 331
SfcI	CTRYAG	2 cut(s)	345, 564
Sse9I	AATT	6 cut(s)	65, 126, 168, 199, 242, 954
SsiI	CCGC	1 cut(s)	529
SspMI	CTAG	2 cut(s)	159, 509
SstI	GAGCTC	1 cut(s)	654
StyD4I	CCNGG	2 cut(s)	583, 688
TaaI	ACNGT	4 cut(s)	504, 850, 880, 966
TaiI	ACGT	2 cut(s)	232, 873
TaqI	TCGA	3 cut(s)	411, 916, 921
TasI	AATT	6 cut(s)	65, 126, 168, 199, 242, 954
TatI	WGTACW	1 cut(s)	855
TfiI	GAWTC	2 cut(s)	666, 913
Tru1I	TTAA	2 cut(s)	372, 620
Tru9I	TTAA	2 cut(s)	372, 620
TscAI	CASTG	1 cut(s)	565
TseFI	GTSAC	1 cut(s)	673
TseI	GCWGC	6 cut(s)	404, 563, 722, 797, 926, 929
Tsp45I	GTSAC	1 cut(s)	673
TspDTI	ATGAA	2 cut(s)	13, 249
TspGWI	ACGGA	1 cut(s)	949
TspRI	CASTG	1 cut(s)	565
Van91I	CCANNNNNTGG	1 cut(s)	881
XagI	CCTNNNNNAGG	1 cut(s)	582
XapI	RAATTY	2 cut(s)	65, 199
XceI	RCATGY	3 cut(s)	281, 523, 617
XmiI	GTMKAC	1 cut(s)	597
XspI	CTAG	2 cut(s)	159, 509
Zsp2I	ATGCAT	1 cut(s)	619

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.