Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0007904

Physical Location & Seq

Genomic Coordinates Reverse (-)

46783197 .. 46788207

Gene Structure 5011 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00425790.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGGCGATGGTGGTGGTGCTATTCTTGGTTTCTCCGCTTCTTCTTCTCTTGTTCGCTTTAATCAAATTTACCACAGCTGATGGTGATTTCACTTTGATGTCCAAACGCCATGTTAACCGCCACGAAATTGAAGACAAAGTTGTTTGGATAACTGGTGCTAGCCGTGGAATTGGGGAGGTTCTTGCTAGGCAACTTGCAAATTTGGGAGCTAAGCTCATTATTTCCGCCCGTAATGAAGCTGAATTGGAGCGAGTCAAGAAACAACTTACTGGTAAACATGCACCTGATGGTGTGAAAGTTTTGCCATTGGATTTGGCTTCTGGTGAAGATTGTCTCAAGGATGTTGTAGAGAAAGCAGAGTCATTCTTTCCGAATGCTGGTGTTGATTACATGATCCATAATGCTGCTTTTGAGCGTCCTAAAACTACAGCATTGGATGTTACTGAGGAGAGTCTAAAGGTAACTTTCAATGTCAATGTTTTTGGGACAATAACGCTGACCCGGCTACTGGCACCTTACATGCTGAGGCGAGGGAAGGGCCATTTTGTTGTGATGAGCAGTGCTGCAGGAAAGACACCTGCACCAGGTCAGGCCGTATACTCTGCCTCTAAACATGCCTTAAATGGGTACTTTCACACCTTGCGTTCCGAGCTCTATCAGAAAGGAATTGGGGTGACCATTGTTTGTCCTGGTCCAATAGAAACATCAAATGGTACAGGAGCAGCAAGCTCAGAAAATAAAGCTTCTTCTGAGAAGCGTGTGTCATCAGAAAGGTGTGCAGAGTTGACAATAATTGCTGCCACCCATGGTCTAAAGGAAGTTTGGATATCATACCAGCCTGTCCTGGCTGTAATGTACTTAGTGCAATACATGCCAACCATTGGTTATTGGCTTATGGACAAGATTGGCGGAAATCGAGTTGAAGCTGCTGCAAGGAAGGGCAACACTTACTCATTGAGCTTACTATTTGGGAAAAAGAAGGCATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short

Protein Analysis

329

Amino Acids

35.8

Weight (kDa)

9.33

Isoelectric Point (pI)

36.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	46 - 238	5.2e-47	short chain dehydrogenase
KR	PF08659	48 - 216	1.7e-14	KR domain
Polysacc_synt_2	PF02719	48 - 238	3.7e-06	Polysaccharide biosynthesis protein
adh_short_C2	PF13561	52 - 266	9e-36	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007904)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03330
fragaria_vesca	FvH4_6g00210 FvH4_6g00210 FvH4_6g00210 FvH4_6g00210
malus_domestica	MD04G1247200.v1.1
prunus_persica	Prupe.6G363500_v2.0.a1 Prupe.6G363500_v2.0.a1 Prupe.6G363500_v2.0.a1
pyrus_communis	pycom04g21790
rosa_chinensis	RchiOBHm_Chr3g0447581
rosa_laevigata	RLG00000025987
rosa_multiflora	Rmu_sc0003550.1_g000006 Rmu_sc0026794.1_g000002
rosa_roxburghii	Rroxscaffold_1G00009020 Rroxscaffold_6G00425790
rosa_rugosa	Rorug02G0603200
rosa_samantha	Rh3AG003400 Rh3BG002900 Rh3CG003200 Rh3DG003200 Rh7AG458400
rosa_wichuraiana	Rw3G000230 Rw5G027660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	586
Acc36I	ACCTGC	1 cut(s)	586
AccB1I	GGYRCC	1 cut(s)	511
AccB7I	CCANNNNNTGG	1 cut(s)	881
AccI	GTMKAC	1 cut(s)	597
AciI	CCGC	4 cut(s)	35, 118, 225, 909
AclWI	GGATC	1 cut(s)	388
AcsI	RAATTY	2 cut(s)	65, 199
AfaI	GTAC	3 cut(s)	629, 715, 857
AfiI	CCNNNNNNNGG	5 cut(s)	377, 508, 584, 624, 881
AgsI	TTSAA	3 cut(s)	131, 469, 923
AjnI	CCWGG	3 cut(s)	583, 688, 843
AluBI	AGCT	9 cut(s)	77, 209, 214, 239, 652, 729, 743, 926, 960
AluI	AGCT	9 cut(s)	77, 209, 214, 239, 652, 729, 743, 926, 960
Alw21I	GWGCWC	1 cut(s)	654
Alw26I	GTCTC	1 cut(s)	338
AlwI	GGATC	1 cut(s)	388
AoxI	GGCC	2 cut(s)	538, 591
ApeKI	GCWGC	6 cut(s)	404, 563, 722, 797, 926, 929
ApoI	RAATTY	2 cut(s)	65, 199
AspS9I	GGNCC	2 cut(s)	538, 692
AsuC2I	CCSGG	1 cut(s)	502
AsuHPI	GGTGA	3 cut(s)	95, 335, 685
AsuNHI	GCTAGC	1 cut(s)	158
AvaII	GGWCC	1 cut(s)	692
BanI	GGYRCC	1 cut(s)	511
BanII	GRGCYC	1 cut(s)	654
BbsI	GAAGAC	1 cut(s)	138
Bbv12I	GWGCWC	1 cut(s)	654
BbvCI	CCTCAGC	1 cut(s)	524
BbvI	GCAGC	6 cut(s)	391, 550, 734, 784, 913, 916
BccI	CCATC	2 cut(s)	74, 281
BceAI	ACGGC	2 cut(s)	147, 578
BciT130I	CCWGG	3 cut(s)	585, 690, 845
BcnI	CCSGG	1 cut(s)	502
BcoDI	GTCTC	1 cut(s)	338
BfaI	CTAG	2 cut(s)	159, 186
BfmI	CTRYAG	2 cut(s)	426, 564
BfuAI	ACCTGC	1 cut(s)	586
BisI	GCNGC	6 cut(s)	405, 564, 723, 798, 927, 930
BlpI	GCTNAGC	1 cut(s)	210
BlsI	GCNGC	6 cut(s)	406, 565, 724, 799, 928, 931
Bme1390I	CCNGG	4 cut(s)	502, 585, 690, 845
Bme18I	GGWCC	1 cut(s)	692
BmgT120I	GGNCC	2 cut(s)	538, 692
BmiI	GGNNCC	1 cut(s)	513
BmrFI	CCNGG	4 cut(s)	502, 585, 690, 845
BmtI	GCTAGC	1 cut(s)	162
BpiI	GAAGAC	1 cut(s)	138
BplI	GAGNNNNNCTC	2 cut(s)	198, 230
Bpu10I	CCTNAGC	1 cut(s)	524
Bpu1102I	GCTNAGC	1 cut(s)	210
BpuEI	CTTGAG	1 cut(s)	320
BpuMI	CCSGG	1 cut(s)	502
BsaJI	CCNNGG	2 cut(s)	163, 805
Bsc4I	CCNNNNNNNGG	5 cut(s)	377, 508, 584, 624, 881
Bse1I	ACTGG	3 cut(s)	157, 274, 513
BseBI	CCWGG	3 cut(s)	585, 690, 845
BseDI	CCNNGG	2 cut(s)	163, 805
BseGI	GGATG	2 cut(s)	346, 442
BseLI	CCNNNNNNNGG	5 cut(s)	377, 508, 584, 624, 881
BseMII	CTCAG	4 cut(s)	435, 515, 741, 744
BseNI	ACTGG	3 cut(s)	157, 274, 513
BseRI	GAGGAG	1 cut(s)	461
BseXI	GCAGC	6 cut(s)	391, 550, 734, 784, 913, 916
BsgI	GTGCAG	2 cut(s)	564, 798
BshFI	GGCC	2 cut(s)	540, 593
BshNI	GGYRCC	1 cut(s)	511
BsiHKAI	GWGCWC	1 cut(s)	654
BsiSI	CCGG	1 cut(s)	502
BslFI	GGGAC	1 cut(s)	499
BslI	CCNNNNNNNGG	5 cut(s)	377, 508, 584, 624, 881
BsmAI	GTCTC	1 cut(s)	338
BsmFI	GGGAC	1 cut(s)	499
BsmI	GAATGC	1 cut(s)	379
BsnI	GGCC	2 cut(s)	540, 593
Bsp1286I	GDGCHC	1 cut(s)	654
Bsp143I	GATC	1 cut(s)	393
Bsp1720I	GCTNAGC	1 cut(s)	210
Bsp19I	CCATGG	1 cut(s)	805
BspACI	CCGC	4 cut(s)	35, 118, 225, 909
BspANI	GGCC	2 cut(s)	540, 593
BspCNI	CTCAG	4 cut(s)	436, 516, 742, 743
BspHI	TCATGA	1 cut(s)	986
BspLI	GGNNCC	1 cut(s)	513
BspMAI	CTGCAG	1 cut(s)	568
BspMI	ACCTGC	1 cut(s)	586
BspOI	GCTAGC	1 cut(s)	162
BspPI	GGATC	1 cut(s)	388
BspT107I	GGYRCC	1 cut(s)	511
BsrI	ACTGG	3 cut(s)	157, 274, 513
BssECI	CCNNGG	2 cut(s)	163, 805
BssMI	GATC	1 cut(s)	393
BssNAI	GTATAC	1 cut(s)	598
BssT1I	CCWWGG	1 cut(s)	805
Bst1107I	GTATAC	1 cut(s)	598
Bst2UI	CCWGG	3 cut(s)	585, 690, 845
BstAPI	GCANNNNNTGC	1 cut(s)	871
BstC8I	GCNNGC	2 cut(s)	160, 727
BstDEI	CTNAG	6 cut(s)	210, 444, 524, 730, 750, 859
BstDSI	CCRYGG	2 cut(s)	163, 805
BstEII	GGTNACC	1 cut(s)	673
BstENI	CCTNNNNNAGG	1 cut(s)	582
BstF5I	GGATG	2 cut(s)	346, 442
BstKTI	GATC	1 cut(s)	396
BstMAI	GTCTC	1 cut(s)	338
BstMBI	GATC	1 cut(s)	393
BstMWI	GCNNNNNNNGC	3 cut(s)	502, 649, 871
BstNI	CCWGG	3 cut(s)	585, 690, 845
BstNSI	RCATGY	4 cut(s)	281, 523, 617, 874
BstPI	GGTNACC	1 cut(s)	673
BstSCI	CCNGG	4 cut(s)	500, 583, 688, 843
BstSFI	CTRYAG	2 cut(s)	426, 564
BstV1I	GCAGC	6 cut(s)	391, 550, 734, 784, 913, 916
BstV2I	GAAGAC	1 cut(s)	138
BstZ17I	GTATAC	1 cut(s)	598
BsuRI	GGCC	2 cut(s)	540, 593
BtgI	CCRYGG	2 cut(s)	163, 805
BtgZI	GCGATG	1 cut(s)	20
BtsCI	GGATG	2 cut(s)	346, 442
BtsI	GCAGTG	1 cut(s)	565
BtsIMutI	CAGTG	1 cut(s)	565
BveI	ACCTGC	1 cut(s)	586
Cac8I	GCNNGC	2 cut(s)	160, 727
CciI	TCATGA	1 cut(s)	986
Cfr13I	GGNCC	2 cut(s)	538, 692
CseI	GACGC	1 cut(s)	404
CsiI	ACCWGGT	1 cut(s)	583
Csp6I	GTAC	3 cut(s)	628, 714, 856
CviAII	CATG	8 cut(s)	110, 278, 391, 520, 614, 806, 871, 987
CviQI	GTAC	3 cut(s)	628, 714, 856
DdeI	CTNAG	6 cut(s)	210, 444, 524, 730, 750, 859
DpnI	GATC	1 cut(s)	395
DpnII	GATC	1 cut(s)	393
EciI	GGCGGA	2 cut(s)	214, 924
Ecl136II	GAGCTC	1 cut(s)	652
Eco130I	CCWWGG	1 cut(s)	805
Eco24I	GRGCYC	1 cut(s)	654
Eco32I	GATATC	1 cut(s)	828
Eco47I	GGWCC	1 cut(s)	692
Eco53kI	GAGCTC	1 cut(s)	652
Eco91I	GGTNACC	1 cut(s)	673
EcoICRI	GAGCTC	1 cut(s)	652
EcoNI	CCTNNNNNAGG	1 cut(s)	582
EcoO65I	GGTNACC	1 cut(s)	673
EcoRII	CCWGG	3 cut(s)	583, 688, 843
EcoRV	GATATC	1 cut(s)	828
EcoT14I	CCWWGG	1 cut(s)	805
EcoT38I	GRGCYC	1 cut(s)	654
ErhI	CCWWGG	1 cut(s)	805
FaeI	CATG	8 cut(s)	113, 281, 394, 523, 617, 809, 874, 990
FaqI	GGGAC	1 cut(s)	499
FatI	CATG	8 cut(s)	109, 277, 390, 519, 613, 805, 870, 986
FblI	GTMKAC	1 cut(s)	597
Fnu4HI	GCNGC	6 cut(s)	405, 564, 723, 798, 927, 930
FokI	GGATG	2 cut(s)	353, 449
FriOI	GRGCYC	1 cut(s)	654
Fsp4HI	GCNGC	6 cut(s)	405, 564, 723, 798, 927, 930
FspBI	CTAG	2 cut(s)	159, 186
GluI	GCNGC	6 cut(s)	405, 564, 723, 798, 927, 930
HaeIII	GGCC	2 cut(s)	540, 593
HapII	CCGG	1 cut(s)	502
HgaI	GACGC	1 cut(s)	404
Hin1II	CATG	8 cut(s)	113, 281, 394, 523, 617, 809, 874, 990
HincII	GTYRAC	2 cut(s)	115, 786
HindII	GTYRAC	2 cut(s)	115, 786
HindIII	AAGCTT	1 cut(s)	741
HinfI	GANTC	3 cut(s)	252, 359, 451
HpaI	GTTAAC	1 cut(s)	115
HpaII	CCGG	1 cut(s)	502
HphI	GGTGA	3 cut(s)	95, 335, 685
Hpy166II	GTNNAC	4 cut(s)	115, 275, 598, 786
Hpy188I	TCNGA	6 cut(s)	372, 649, 660, 733, 751, 769
Hpy188III	TCNNGA	2 cut(s)	256, 987
Hpy8I	GTNNAC	4 cut(s)	115, 275, 598, 786
HpyAV	CCTTC	3 cut(s)	529, 931, 973
HpyCH4V	TGCA	7 cut(s)	197, 281, 566, 581, 779, 865, 932
HpyF10VI	GCNNNNNNNGC	3 cut(s)	502, 649, 871
HpyF3I	CTNAG	6 cut(s)	210, 444, 524, 730, 750, 859
Hsp92II	CATG	8 cut(s)	113, 281, 394, 523, 617, 809, 874, 990
KspAI	GTTAAC	1 cut(s)	115
Kzo9I	GATC	1 cut(s)	393
LmnI	GCTCC	3 cut(s)	206, 247, 719
Lsp1109I	GCAGC	6 cut(s)	391, 550, 734, 784, 913, 916
MabI	ACCWGGT	1 cut(s)	583
MaeI	CTAG	2 cut(s)	159, 186
MaeIII	GTNAC	3 cut(s)	439, 460, 673
MalI	GATC	1 cut(s)	395
MboI	GATC	1 cut(s)	393
MboII	GAAGA	5 cut(s)	32, 35, 143, 338, 738
MhlI	GDGCHC	1 cut(s)	654
MluCI	AATT	7 cut(s)	65, 126, 168, 199, 242, 666, 792
MlyI	GAGTC	3 cut(s)	261, 368, 460
MnlI	CCTC	5 cut(s)	169, 439, 519, 524, 616
MseI	TTAA	3 cut(s)	59, 114, 620
MslI	CAYNNNNRTG	1 cut(s)	95
MspA1I	CMGCKG	1 cut(s)	77
MspI	CCGG	1 cut(s)	502
MspR9I	CCNGG	4 cut(s)	502, 585, 690, 845
Mva1269I	GAATGC	1 cut(s)	379
MvaI	CCWGG	3 cut(s)	585, 690, 845
MwoI	GCNNNNNNNGC	3 cut(s)	502, 649, 871
NciI	CCSGG	1 cut(s)	502
NcoI	CCATGG	1 cut(s)	805
NdeII	GATC	1 cut(s)	393
NheI	GCTAGC	1 cut(s)	158
NlaIII	CATG	8 cut(s)	113, 281, 394, 523, 617, 809, 874, 990
NlaIV	GGNNCC	1 cut(s)	513
NmuCI	GTSAC	1 cut(s)	673
NspI	RCATGY	4 cut(s)	281, 523, 617, 874
PagI	TCATGA	1 cut(s)	986
PaqCI	CACCTGC	1 cut(s)	586
PctI	GAATGC	1 cut(s)	379
PflMI	CCANNNNNTGG	1 cut(s)	881
PkrI	GCNGC	6 cut(s)	406, 565, 724, 799, 928, 931
PleI	GAGTC	3 cut(s)	260, 367, 459
PpsI	GAGTC	3 cut(s)	260, 367, 459
Psp124BI	GAGCTC	1 cut(s)	654
Psp6I	CCWGG	3 cut(s)	583, 688, 843
PspEI	GGTNACC	1 cut(s)	673
PspGI	CCWGG	3 cut(s)	583, 688, 843
PspN4I	GGNNCC	1 cut(s)	513
PspPI	GGNCC	2 cut(s)	538, 692
PstI	CTGCAG	1 cut(s)	568
PvuII	CAGCTG	1 cut(s)	77
RsaI	GTAC	3 cut(s)	629, 715, 857
RsaNI	GTAC	3 cut(s)	628, 714, 856
RseI	CAYNNNNRTG	1 cut(s)	95
SacI	GAGCTC	1 cut(s)	654
SaqAI	TTAA	3 cut(s)	59, 114, 620
SatI	GCNGC	6 cut(s)	405, 564, 723, 798, 927, 930
Sau3AI	GATC	1 cut(s)	393
Sau96I	GGNCC	2 cut(s)	538, 692
SchI	GAGTC	3 cut(s)	261, 368, 460
ScrFI	CCNGG	4 cut(s)	502, 585, 690, 845
SduI	GDGCHC	1 cut(s)	654
SexAI	ACCWGGT	1 cut(s)	583
SfcI	CTRYAG	2 cut(s)	426, 564
SinI	GGWCC	1 cut(s)	692
SmiMI	CAYNNNNRTG	1 cut(s)	95
SmlI	CTYRAG	1 cut(s)	335
SmoI	CTYRAG	1 cut(s)	335
Sse9I	AATT	7 cut(s)	65, 126, 168, 199, 242, 666, 792
SsiI	CCGC	4 cut(s)	35, 118, 225, 909
SspMI	CTAG	2 cut(s)	159, 186
SstI	GAGCTC	1 cut(s)	654
StyD4I	CCNGG	4 cut(s)	500, 583, 688, 843
StyI	CCWWGG	1 cut(s)	805
TaqI	TCGA	1 cut(s)	916
TasI	AATT	7 cut(s)	65, 126, 168, 199, 242, 666, 792
TatI	WGTACW	1 cut(s)	855
Tru1I	TTAA	3 cut(s)	59, 114, 620
Tru9I	TTAA	3 cut(s)	59, 114, 620
TscAI	CASTG	1 cut(s)	565
TseFI	GTSAC	1 cut(s)	673
TseI	GCWGC	6 cut(s)	404, 563, 722, 797, 926, 929
Tsp45I	GTSAC	1 cut(s)	673
TspDTI	ATGAA	1 cut(s)	249
TspRI	CASTG	1 cut(s)	565
Van91I	CCANNNNNTGG	1 cut(s)	881
VpaK11BI	GGWCC	1 cut(s)	692
XagI	CCTNNNNNAGG	1 cut(s)	582
XapI	RAATTY	2 cut(s)	65, 199
XceI	RCATGY	4 cut(s)	281, 523, 617, 874
XmiI	GTMKAC	1 cut(s)	597
XspI	CTAG	2 cut(s)	159, 186

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.