RchiOBHm_Chr3g0447581

Dehydrogenase reductase SDR family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0007904
Physical Location & Seq
Reverse (-)
241892 .. 246021
4130 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ41504

Sequence Viewer

Length: 990 bp
ATGGCGATGGTGGTGGTGCTATTCTTGGTTTCTCTGCTTCTTCTTCTCTTGTTTGCTTTAATCAAATTTACCACAGCTGATGGTGATTTCACTTTGATGTCCAAACGCCATGTTAACCGCCACGAAATTGAAGACAAAGTTGTTTGGATAACTGGTGCTAGCCGTGGAATTGGGGAGGTTCTTGCTAAGCAACTTGCAAATTTGGGAGCTAAGCTCATTATTTCCGCCCGTAATGAAGCTGAATTGGAGCGAGTCAAGAAACAACTTACTGGTAAACATGCACCTGATGGTGTGAAAGTTTTGCCATTGGATTTGGCTTCTGGTGAAGATTGTCTCAAGGATGTTGTAGAGAAAGCAGAGTCATTCTTTCCAAATGCTGGTGTTGATTACATGATCCATAATGCTGCTTTTGAGCGTCCTAAAACTACAGCATTGGATGTTACTGAGGAGAGTCTAAAGGTAACTTTCAATGTCAATGTTCTTGGGACAATAACGCTGACCCGGCTACTGGCACCTTACATGCTGAGGCGAGGGAAGGGCCATTTTGTTGTGATGAGCAGTGCTGCAGGAAAGACACCTGCACCAGGTCAGGCCGTATACTCTGCCTCTAAACATGCCTTAAATGGGTACTTTCACACCTTGCGTTCCGAGCTCTATCAGAAAGGAATAGGGGTGACCATTGTTTGTCCTGGTCCAATAGAAACATCAAATGGTACAGGAGCAGCAAGCTCAGAGAATAAAGCTTCTTCTGAGAAGCGTGTGTCATCAGAAAGGTGTGCAGAGTTGACAATAATTGCTGCCACCCATGGTCTAAAGGAAGTTTGGATATCATACCAGCCTGTCCTGGCTGTAATGTACTTGGTGCAGTACATGCCAACCATTGGTTATTGGCTTATGGACAAGATTGGTGGAAATCGAGTTGAAGCTGCTGCAAGGAAGGGCAACACTTACTCATTGAGCTTACTATTTGGGAAAAAGAAGGCATCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
adh_short

Protein Analysis

329

Amino Acids

35.76

Weight (kDa)

9.31

Isoelectric Point (pI)

35.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 46 - 238 1.2e-46 short chain dehydrogenase
KR PF08659 48 - 216 1.1e-14 KR domain
Polysacc_synt_2 PF02719 48 - 238 5.5e-06 Polysaccharide biosynthesis protein
adh_short_C2 PF13561 52 - 266 2.1e-35 Enoyl-(Acyl carrier protein) reductase
NAD_binding_10 PF13460 52 - 264 8.3e-06 NAD(P)H-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 586
Acc36I ACCTGC 1 cut(s) 586
AccB1I GGYRCC 1 cut(s) 511
AccB7I CCANNNNNTGG 2 cut(s) 377, 881
AccI GTMKAC 1 cut(s) 597
AciI CCGC 2 cut(s) 118, 225
AclWI GGATC 1 cut(s) 388
AcsI RAATTY 2 cut(s) 65, 199
AfaI GTAC 4 cut(s) 629, 715, 857, 869
AfiI CCNNNNNNNGG 5 cut(s) 377, 508, 584, 624, 881
AgsI TTSAA 3 cut(s) 131, 469, 923
AjnI CCWGG 3 cut(s) 583, 688, 843
AluBI AGCT 9 cut(s) 77, 209, 214, 239, 652, 729, 743, 926, 960
AluI AGCT 9 cut(s) 77, 209, 214, 239, 652, 729, 743, 926, 960
Alw21I GWGCWC 1 cut(s) 654
Alw26I GTCTC 1 cut(s) 338
AlwI GGATC 1 cut(s) 388
AoxI GGCC 2 cut(s) 538, 591
ApeKI GCWGC 6 cut(s) 404, 563, 722, 797, 926, 929
ApoI RAATTY 2 cut(s) 65, 199
AspS9I GGNCC 2 cut(s) 538, 692
AsuC2I CCSGG 1 cut(s) 502
AsuHPI GGTGA 3 cut(s) 95, 335, 685
AsuNHI GCTAGC 1 cut(s) 158
AvaII GGWCC 1 cut(s) 692
BanI GGYRCC 1 cut(s) 511
BanII GRGCYC 1 cut(s) 654
BbsI GAAGAC 1 cut(s) 138
Bbv12I GWGCWC 1 cut(s) 654
BbvCI CCTCAGC 1 cut(s) 524
BbvI GCAGC 6 cut(s) 391, 550, 734, 784, 913, 916
BccI CCATC 2 cut(s) 74, 281
BceAI ACGGC 2 cut(s) 147, 578
BciT130I CCWGG 3 cut(s) 585, 690, 845
BcnI CCSGG 1 cut(s) 502
BcoDI GTCTC 1 cut(s) 338
BfaI CTAG 1 cut(s) 159
BfmI CTRYAG 2 cut(s) 426, 564
BfuAI ACCTGC 1 cut(s) 586
BisI GCNGC 6 cut(s) 405, 564, 723, 798, 927, 930
BlpI GCTNAGC 2 cut(s) 186, 210
BlsI GCNGC 6 cut(s) 406, 565, 724, 799, 928, 931
Bme1390I CCNGG 4 cut(s) 502, 585, 690, 845
Bme18I GGWCC 1 cut(s) 692
BmgT120I GGNCC 2 cut(s) 538, 692
BmiI GGNNCC 1 cut(s) 513
BmrFI CCNGG 4 cut(s) 502, 585, 690, 845
BmtI GCTAGC 1 cut(s) 162
BpiI GAAGAC 1 cut(s) 138
BplI GAGNNNNNCTC 2 cut(s) 198, 230
Bpu10I CCTNAGC 1 cut(s) 524
Bpu1102I GCTNAGC 2 cut(s) 186, 210
BpuEI CTTGAG 1 cut(s) 320
BpuMI CCSGG 1 cut(s) 502
BsaJI CCNNGG 2 cut(s) 163, 805
Bsc4I CCNNNNNNNGG 5 cut(s) 377, 508, 584, 624, 881
Bse1I ACTGG 3 cut(s) 157, 274, 513
BseBI CCWGG 3 cut(s) 585, 690, 845
BseDI CCNNGG 2 cut(s) 163, 805
BseGI GGATG 2 cut(s) 346, 442
BseLI CCNNNNNNNGG 5 cut(s) 377, 508, 584, 624, 881
BseMII CTCAG 4 cut(s) 435, 515, 741, 744
BseNI ACTGG 3 cut(s) 157, 274, 513
BseRI GAGGAG 1 cut(s) 461
BseXI GCAGC 6 cut(s) 391, 550, 734, 784, 913, 916
BsgI GTGCAG 3 cut(s) 564, 798, 884
BshFI GGCC 2 cut(s) 540, 593
BshNI GGYRCC 1 cut(s) 511
BsiHKAI GWGCWC 1 cut(s) 654
BsiSI CCGG 1 cut(s) 502
BslFI GGGAC 1 cut(s) 499
BslI CCNNNNNNNGG 5 cut(s) 377, 508, 584, 624, 881
BsmAI GTCTC 1 cut(s) 338
BsmFI GGGAC 1 cut(s) 499
BsnI GGCC 2 cut(s) 540, 593
Bsp1286I GDGCHC 1 cut(s) 654
Bsp143I GATC 1 cut(s) 393
Bsp1720I GCTNAGC 2 cut(s) 186, 210
Bsp19I CCATGG 1 cut(s) 805
BspACI CCGC 2 cut(s) 118, 225
BspANI GGCC 2 cut(s) 540, 593
BspCNI CTCAG 4 cut(s) 436, 516, 742, 743
BspHI TCATGA 1 cut(s) 986
BspLI GGNNCC 1 cut(s) 513
BspMAI CTGCAG 1 cut(s) 568
BspMI ACCTGC 1 cut(s) 586
BspOI GCTAGC 1 cut(s) 162
BspPI GGATC 1 cut(s) 388
BspT107I GGYRCC 1 cut(s) 511
BsrI ACTGG 3 cut(s) 157, 274, 513
BssECI CCNNGG 2 cut(s) 163, 805
BssMI GATC 1 cut(s) 393
BssNAI GTATAC 1 cut(s) 598
BssT1I CCWWGG 1 cut(s) 805
Bst1107I GTATAC 1 cut(s) 598
Bst2UI CCWGG 3 cut(s) 585, 690, 845
BstAPI GCANNNNNTGC 1 cut(s) 871
BstC8I GCNNGC 2 cut(s) 160, 727
BstDEI CTNAG 6 cut(s) 186, 210, 444, 524, 730, 750
BstDSI CCRYGG 2 cut(s) 163, 805
BstEII GGTNACC 1 cut(s) 673
BstENI CCTNNNNNAGG 1 cut(s) 582
BstF5I GGATG 2 cut(s) 346, 442
BstKTI GATC 1 cut(s) 396
BstMAI GTCTC 1 cut(s) 338
BstMBI GATC 1 cut(s) 393
BstMWI GCNNNNNNNGC 3 cut(s) 502, 649, 871
BstNI CCWGG 3 cut(s) 585, 690, 845
BstNSI RCATGY 4 cut(s) 281, 523, 617, 874
BstPI GGTNACC 1 cut(s) 673
BstSCI CCNGG 4 cut(s) 500, 583, 688, 843
BstSFI CTRYAG 2 cut(s) 426, 564
BstV1I GCAGC 6 cut(s) 391, 550, 734, 784, 913, 916
BstV2I GAAGAC 1 cut(s) 138
BstZ17I GTATAC 1 cut(s) 598
BsuRI GGCC 2 cut(s) 540, 593
BtgI CCRYGG 2 cut(s) 163, 805
BtgZI GCGATG 1 cut(s) 20
BtsCI GGATG 2 cut(s) 346, 442
BtsI GCAGTG 1 cut(s) 565
BtsIMutI CAGTG 1 cut(s) 565
BveI ACCTGC 1 cut(s) 586
Cac8I GCNNGC 2 cut(s) 160, 727
CciI TCATGA 1 cut(s) 986
Cfr13I GGNCC 2 cut(s) 538, 692
CseI GACGC 1 cut(s) 404
CsiI ACCWGGT 1 cut(s) 583
Csp6I GTAC 4 cut(s) 628, 714, 856, 868
CspCI CAANNNNNGTGG 2 cut(s) 889, 924
CviAII CATG 8 cut(s) 110, 278, 391, 520, 614, 806, 871, 987
CviQI GTAC 4 cut(s) 628, 714, 856, 868
DdeI CTNAG 6 cut(s) 186, 210, 444, 524, 730, 750
DpnI GATC 1 cut(s) 395
DpnII GATC 1 cut(s) 393
EciI GGCGGA 1 cut(s) 214
Ecl136II GAGCTC 1 cut(s) 652
Eco130I CCWWGG 1 cut(s) 805
Eco24I GRGCYC 1 cut(s) 654
Eco32I GATATC 1 cut(s) 828
Eco47I GGWCC 1 cut(s) 692
Eco53kI GAGCTC 1 cut(s) 652
Eco91I GGTNACC 1 cut(s) 673
EcoICRI GAGCTC 1 cut(s) 652
EcoNI CCTNNNNNAGG 1 cut(s) 582
EcoO65I GGTNACC 1 cut(s) 673
EcoRII CCWGG 3 cut(s) 583, 688, 843
EcoRV GATATC 1 cut(s) 828
EcoT14I CCWWGG 1 cut(s) 805
EcoT38I GRGCYC 1 cut(s) 654
ErhI CCWWGG 1 cut(s) 805
FaeI CATG 8 cut(s) 113, 281, 394, 523, 617, 809, 874, 990
FaqI GGGAC 1 cut(s) 499
FatI CATG 8 cut(s) 109, 277, 390, 519, 613, 805, 870, 986
FblI GTMKAC 1 cut(s) 597
Fnu4HI GCNGC 6 cut(s) 405, 564, 723, 798, 927, 930
FokI GGATG 2 cut(s) 353, 449
FriOI GRGCYC 1 cut(s) 654
Fsp4HI GCNGC 6 cut(s) 405, 564, 723, 798, 927, 930
FspBI CTAG 1 cut(s) 159
GluI GCNGC 6 cut(s) 405, 564, 723, 798, 927, 930
HaeIII GGCC 2 cut(s) 540, 593
HapII CCGG 1 cut(s) 502
HgaI GACGC 1 cut(s) 404
Hin1II CATG 8 cut(s) 113, 281, 394, 523, 617, 809, 874, 990
HincII GTYRAC 2 cut(s) 115, 786
HindII GTYRAC 2 cut(s) 115, 786
HindIII AAGCTT 1 cut(s) 741
HinfI GANTC 3 cut(s) 252, 359, 451
HpaI GTTAAC 1 cut(s) 115
HpaII CCGG 1 cut(s) 502
HphI GGTGA 3 cut(s) 95, 335, 685
Hpy166II GTNNAC 4 cut(s) 115, 275, 598, 786
Hpy188I TCNGA 5 cut(s) 649, 660, 733, 751, 769
Hpy188III TCNNGA 2 cut(s) 256, 987
Hpy8I GTNNAC 4 cut(s) 115, 275, 598, 786
HpyAV CCTTC 3 cut(s) 529, 931, 973
HpyCH4V TGCA 7 cut(s) 197, 281, 566, 581, 779, 865, 932
HpyF10VI GCNNNNNNNGC 3 cut(s) 502, 649, 871
HpyF3I CTNAG 6 cut(s) 186, 210, 444, 524, 730, 750
Hsp92II CATG 8 cut(s) 113, 281, 394, 523, 617, 809, 874, 990
KspAI GTTAAC 1 cut(s) 115
Kzo9I GATC 1 cut(s) 393
LmnI GCTCC 3 cut(s) 206, 247, 719
Lsp1109I GCAGC 6 cut(s) 391, 550, 734, 784, 913, 916
MabI ACCWGGT 1 cut(s) 583
MaeI CTAG 1 cut(s) 159
MaeIII GTNAC 3 cut(s) 439, 460, 673
MalI GATC 1 cut(s) 395
MboI GATC 1 cut(s) 393
MboII GAAGA 5 cut(s) 32, 35, 143, 338, 738
MhlI GDGCHC 1 cut(s) 654
MluCI AATT 6 cut(s) 65, 126, 168, 199, 242, 792
MlyI GAGTC 3 cut(s) 261, 368, 460
MnlI CCTC 5 cut(s) 169, 439, 519, 524, 616
MseI TTAA 3 cut(s) 59, 114, 620
MslI CAYNNNNRTG 1 cut(s) 95
MspA1I CMGCKG 1 cut(s) 77
MspI CCGG 1 cut(s) 502
MspR9I CCNGG 4 cut(s) 502, 585, 690, 845
MvaI CCWGG 3 cut(s) 585, 690, 845
MwoI GCNNNNNNNGC 3 cut(s) 502, 649, 871
NciI CCSGG 1 cut(s) 502
NcoI CCATGG 1 cut(s) 805
NdeII GATC 1 cut(s) 393
NheI GCTAGC 1 cut(s) 158
NlaIII CATG 8 cut(s) 113, 281, 394, 523, 617, 809, 874, 990
NlaIV GGNNCC 1 cut(s) 513
NmuCI GTSAC 1 cut(s) 673
NspI RCATGY 4 cut(s) 281, 523, 617, 874
PagI TCATGA 1 cut(s) 986
PaqCI CACCTGC 1 cut(s) 586
PflMI CCANNNNNTGG 2 cut(s) 377, 881
PkrI GCNGC 6 cut(s) 406, 565, 724, 799, 928, 931
PleI GAGTC 3 cut(s) 260, 367, 459
PpsI GAGTC 3 cut(s) 260, 367, 459
Psp124BI GAGCTC 1 cut(s) 654
Psp6I CCWGG 3 cut(s) 583, 688, 843
PspEI GGTNACC 1 cut(s) 673
PspGI CCWGG 3 cut(s) 583, 688, 843
PspN4I GGNNCC 1 cut(s) 513
PspPI GGNCC 2 cut(s) 538, 692
PstI CTGCAG 1 cut(s) 568
PvuII CAGCTG 1 cut(s) 77
RsaI GTAC 4 cut(s) 629, 715, 857, 869
RsaNI GTAC 4 cut(s) 628, 714, 856, 868
RseI CAYNNNNRTG 1 cut(s) 95
SacI GAGCTC 1 cut(s) 654
SaqAI TTAA 3 cut(s) 59, 114, 620
SatI GCNGC 6 cut(s) 405, 564, 723, 798, 927, 930
Sau3AI GATC 1 cut(s) 393
Sau96I GGNCC 2 cut(s) 538, 692
SchI GAGTC 3 cut(s) 261, 368, 460
ScrFI CCNGG 4 cut(s) 502, 585, 690, 845
SduI GDGCHC 1 cut(s) 654
SexAI ACCWGGT 1 cut(s) 583
SfcI CTRYAG 2 cut(s) 426, 564
SinI GGWCC 1 cut(s) 692
SmiMI CAYNNNNRTG 1 cut(s) 95
SmlI CTYRAG 1 cut(s) 335
SmoI CTYRAG 1 cut(s) 335
Sse9I AATT 6 cut(s) 65, 126, 168, 199, 242, 792
SsiI CCGC 2 cut(s) 118, 225
SspMI CTAG 1 cut(s) 159
SstI GAGCTC 1 cut(s) 654
StyD4I CCNGG 4 cut(s) 500, 583, 688, 843
StyI CCWWGG 1 cut(s) 805
TaqI TCGA 1 cut(s) 916
TasI AATT 6 cut(s) 65, 126, 168, 199, 242, 792
TatI WGTACW 2 cut(s) 855, 867
Tru1I TTAA 3 cut(s) 59, 114, 620
Tru9I TTAA 3 cut(s) 59, 114, 620
TscAI CASTG 1 cut(s) 565
TseFI GTSAC 1 cut(s) 673
TseI GCWGC 6 cut(s) 404, 563, 722, 797, 926, 929
Tsp45I GTSAC 1 cut(s) 673
TspDTI ATGAA 1 cut(s) 249
TspRI CASTG 1 cut(s) 565
Van91I CCANNNNNTGG 2 cut(s) 377, 881
VpaK11BI GGWCC 1 cut(s) 692
XagI CCTNNNNNAGG 1 cut(s) 582
XapI RAATTY 2 cut(s) 65, 199
XceI RCATGY 4 cut(s) 281, 523, 617, 874
XmiI GTMKAC 1 cut(s) 597
XspI CTAG 1 cut(s) 159
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.