FvH4_6g01560

Belongs to the class-I aminoacyl-tRNA synthetase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0017319
Physical Location & Seq
Reverse (-)
880410 .. 884711
4302 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g01560.t1

Sequence Viewer

Length: 1251 bp
ATGGAGAAGAGCATCACCAACTTGGTACATGGAGGTATCAAGCAGTGGGCTCCAAAGCTTCTTATTAAGAAGGCTTTGGTAGACTTTTCATCCCCCGAATCATCTGGTGCAATGGATTTCTTGCATTTCAGAGCAGCTATTATAGGGGACTCTATTGCCCGGATTCTTGAGTTTTCTGGTGTGAAGGTTATGCGTGCTTCTCATGTCACTGCCTATGGGTCACAGGGTTGGCAACTAATCCGCTCATCTGAGTGGAAGCCAATGCCAGTTGACACATGTCAACAGTTGCGTGAGTTTTATACGCTTGCTGGAATACAATGGCAAGATGAGGAGGGGACTTTCTATTCGGTCAGGGAGGAGGCCCTGAAGAATTTGAGAAATGATATGAAAGAGAAGTTTCTTGTCATGCCACGGGGAGATATTTTAACTGAGCTCATTTCTCTTGAGTATCGGTTAAAATATCAAAAAGCAGATTGGATTATATATATTTCTCATGCTACACATGAGGATCATTTCTTTCAGACTTTTAAGGTAGCTGAATCTGCTGGTTGGCATGGAGGTGATAATGACTATCCCAAATTTAGCCATATATCACTTCAAAAGAAGTGTGATTTTGGTCTAGCCATGCAGTTCAATGATGTGTTCAAAGGAGTCAAGAGCCGAAGTGAAAATCTCCTCAAGTTTGTGCTGCCAGAGTCTGAATATCAGCGTGTGAAAACTTCACACTCAGTTGCTTATGCTTCTCTGAAGTATGCTATTCTGAAGAAAACCTTTGGTGAAATTGCCTTTGATGAGATTGATGTCAAACATTTGTTTAATCGCAAGGGAAAAACAGCTGTTTATCTCCTTCGCACGTACAGCTGGATATCTGGCATGCTTGATCACGTCCACAGGGAGGAACTGAAAAAGAATAATGCGGTTGTAGTAGAGCATGTCGGTGCCCGAGCTCTAGCACTTTACTTGCTTAGATTTCCAGAGGTCATTCAAAAGGCTCTGGATAGCTTGTCAGCTGCTGTTCTGTGCGACTATGTCTATGATCTGGCTATGATCTTTACTCAGAAGTTCTATGCTGAGTATGCTCGGGATTTACAGTTTGCAAGAGTTCATTTCGATCACCAGGAGCAGCGGTTGAAGGAGCTGACAGCGGCTGCAATGTCTAGAAGAACGTTGCTCATTGAGGCAACCCGGATTGTTATGGAGAAGTGTCTTGAGCTGTTAGGTTTGGAGCCCGTCTCCTGTTTGCTTTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000049 GO:0000122 GO:0000166 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004812 GO:0004814 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006082 GO:0006139 GO:0006355 GO:0006357 GO:0006399 GO:0006412 GO:0006418 GO:0006420 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0007275 GO:0007568 GO:0008144 GO:0008150 GO:0008152 GO:0008340 GO:0009058 GO:0009059 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009987 GO:0010259 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0016070 GO:0016597 GO:0016874 GO:0016875 GO:0017076 GO:0017101 GO:0019219 GO:0019222 GO:0019538 GO:0019752 GO:0030554 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031406 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0032991 GO:0034618 GO:0034641 GO:0034645 GO:0034660 GO:0035639 GO:0036094 GO:0043038 GO:0043039 GO:0043043 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043177 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045892 GO:0045934 GO:0046483 GO:0048518 GO:0048519 GO:0048523 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097367 GO:0140098 GO:0140101 GO:1901265 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko00970 map00970
Pfam Domains
Protein Families
Arg_tRNA_synt_N DALR_1 tRNA-synt_1d

Protein Analysis

417

Amino Acids

47.92

Weight (kDa)

8.38

Isoelectric Point (pI)

40.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
tRNA-synt_1d PF00750 23 - 127 9.4e-13 tRNA synthetases class I (R), catalytic domain
DALR_1 PF05746 287 - 412 6.3e-14 DALR anticodon binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 938
AccBSI CCGCTC 1 cut(s) 243
AccI GTMKAC 1 cut(s) 81
AciI CCGC 4 cut(s) 241, 917, 1126, 1145
AclI AACGTT 1 cut(s) 1166
AclWI GGATC 1 cut(s) 516
AcsI RAATTY 2 cut(s) 370, 578
AcuI CTGAAG 3 cut(s) 386, 767, 782
AfaI GTAC 2 cut(s) 27, 857
AfiI CCNNNNNNNGG 1 cut(s) 895
AflIII ACRYGT 1 cut(s) 275
AgsI TTSAA 5 cut(s) 599, 634, 646, 986, 1132
AjiI CACGTC 1 cut(s) 886
AjnI CCWGG 1 cut(s) 1116
Alw21I GWGCWC 2 cut(s) 435, 949
Alw26I GTCTC 1 cut(s) 1237
AlwI GGATC 1 cut(s) 516
AlwNI CAGNNNCTG 3 cut(s) 698, 1013, 1148
Ama87I CYCGRG 2 cut(s) 942, 1080
AoxI GGCC 1 cut(s) 360
ApeKI GCWGC 5 cut(s) 134, 688, 1010, 1123, 1148
ApoI RAATTY 2 cut(s) 370, 578
ArsI GACNNNNNNTTYG 2 cut(s) 328, 360
AspS9I GGNCC 1 cut(s) 361
AsuC2I CCSGG 2 cut(s) 160, 1186
AsuHPI GGTGA 4 cut(s) 7, 572, 788, 1106
AvaI CYCGRG 2 cut(s) 942, 1080
BaeGI GKGCMC 1 cut(s) 943
BanI GGYRCC 1 cut(s) 938
BanII GRGCYC 4 cut(s) 52, 435, 949, 1230
Bbv12I GWGCWC 2 cut(s) 435, 949
BbvI GCAGC 5 cut(s) 146, 675, 997, 1135, 1135
BciT130I CCWGG 1 cut(s) 1118
BclI TGATCA 1 cut(s) 880
BcnI CCSGG 2 cut(s) 160, 1186
BcoDI GTCTC 1 cut(s) 1237
BfaI CTAG 4 cut(s) 620, 950, 1158, 1249
BisI GCNGC 6 cut(s) 135, 689, 1011, 1124, 1146, 1149
BlsI GCNGC 6 cut(s) 136, 690, 1012, 1125, 1147, 1150
Bme1390I CCNGG 3 cut(s) 160, 1118, 1186
BmeT110I CYCGRG 2 cut(s) 942, 1080
BmgBI CACGTC 1 cut(s) 886
BmgT120I GGNCC 1 cut(s) 361
BmiI GGNNCC 3 cut(s) 51, 940, 1227
BmrFI CCNGG 3 cut(s) 160, 1118, 1186
BmsI GCATC 1 cut(s) 21
BoxI GACNNNNGTC 1 cut(s) 276
BplI GAGNNNNNCTC 2 cut(s) 1217, 1249
BpuEI CTTGAG 4 cut(s) 188, 464, 662, 1229
BpuMI CCSGG 2 cut(s) 160, 1186
BsaAI YACGTR 1 cut(s) 855
BsaJI CCNNGG 1 cut(s) 410
BsaXI ACNNNNNCTCC 2 cut(s) 1112, 1142
Bsc4I CCNNNNNNNGG 1 cut(s) 895
Bse1I ACTGG 1 cut(s) 266
Bse3DI GCAATG 2 cut(s) 117, 1158
BseBI CCWGG 1 cut(s) 1118
BseDI CCNNGG 1 cut(s) 410
BseGI GGATG 1 cut(s) 89
BseLI CCNNNNNNNGG 1 cut(s) 895
BseMI GCAATG 2 cut(s) 117, 1158
BseMII CTCAG 5 cut(s) 240, 420, 741, 1062, 1070
BseNI ACTGG 1 cut(s) 266
BseRI GAGGAG 3 cut(s) 344, 371, 665
BseSI GKGCMC 1 cut(s) 943
BseXI GCAGC 5 cut(s) 146, 675, 997, 1135, 1135
BshFI GGCC 1 cut(s) 362
BshNI GGYRCC 1 cut(s) 938
BsiHKAI GWGCWC 2 cut(s) 435, 949
BsiHKCI CYCGRG 2 cut(s) 942, 1080
BsiSI CCGG 2 cut(s) 160, 1186
BslFI GGGAC 2 cut(s) 161, 349
BslI CCNNNNNNNGG 1 cut(s) 895
BsmAI GTCTC 1 cut(s) 1237
BsmBI CGTCTC 1 cut(s) 1237
BsmFI GGGAC 2 cut(s) 161, 349
BsnI GGCC 1 cut(s) 362
BsoBI CYCGRG 2 cut(s) 942, 1080
Bsp1286I GDGCHC 5 cut(s) 52, 435, 943, 949, 1230
Bsp143I GATC 5 cut(s) 508, 880, 1036, 1047, 1111
BspACI CCGC 4 cut(s) 241, 917, 1126, 1145
BspANI GGCC 1 cut(s) 362
BspCNI CTCAG 5 cut(s) 241, 421, 740, 1063, 1069
BspLI GGNNCC 3 cut(s) 51, 940, 1227
BspPI GGATC 1 cut(s) 516
BspQI GCTCTTC 1 cut(s) 2
BspT107I GGYRCC 1 cut(s) 938
BsrBI CCGCTC 1 cut(s) 243
BsrDI GCAATG 2 cut(s) 117, 1158
BsrI ACTGG 1 cut(s) 266
BssECI CCNNGG 1 cut(s) 410
BssMI GATC 5 cut(s) 508, 880, 1036, 1047, 1111
Bst2UI CCWGG 1 cut(s) 1118
Bst4CI ACNGT 2 cut(s) 285, 1092
Bst6I CTCTTC 1 cut(s) 2
BstBAI YACGTR 1 cut(s) 855
BstC8I GCNNGC 3 cut(s) 195, 306, 875
BstDEI CTNAG 6 cut(s) 249, 429, 727, 965, 1056, 1071
BstDSI CCRYGG 1 cut(s) 410
BstF5I GGATG 1 cut(s) 89
BstKTI GATC 5 cut(s) 511, 883, 1039, 1050, 1114
BstMAI GTCTC 1 cut(s) 1237
BstMBI GATC 5 cut(s) 508, 880, 1036, 1047, 1111
BstMWI GCNNNNNNNGC 3 cut(s) 542, 858, 1076
BstNI CCWGG 1 cut(s) 1118
BstNSI RCATGY 3 cut(s) 279, 877, 935
BstPAI GACNNNNGTC 1 cut(s) 276
BstSCI CCNGG 3 cut(s) 158, 1116, 1184
BstSLI GKGCMC 1 cut(s) 943
BstV1I GCAGC 5 cut(s) 146, 675, 997, 1135, 1135
BsuRI GGCC 1 cut(s) 362
BtgI CCRYGG 1 cut(s) 410
BtrI CACGTC 1 cut(s) 886
BtsCI GGATG 1 cut(s) 89
BtsI GCAGTG 2 cut(s) 50, 207
BtsIMutI CAGTG 2 cut(s) 50, 207
Cac8I GCNNGC 3 cut(s) 195, 306, 875
CaiI CAGNNNCTG 3 cut(s) 698, 1013, 1148
Cfr13I GGNCC 1 cut(s) 361
Csp6I GTAC 2 cut(s) 26, 856
CviQI GTAC 2 cut(s) 26, 856
DdeI CTNAG 6 cut(s) 249, 429, 727, 965, 1056, 1071
DpnI GATC 5 cut(s) 510, 882, 1038, 1049, 1113
DpnII GATC 5 cut(s) 508, 880, 1036, 1047, 1111
Eam1104I CTCTTC 1 cut(s) 2
EarI CTCTTC 1 cut(s) 2
Ecl136II GAGCTC 2 cut(s) 433, 947
Eco24I GRGCYC 4 cut(s) 52, 435, 949, 1230
Eco32I GATATC 1 cut(s) 867
Eco53kI GAGCTC 2 cut(s) 433, 947
Eco57I CTGAAG 3 cut(s) 386, 767, 782
Eco88I CYCGRG 2 cut(s) 942, 1080
EcoICRI GAGCTC 2 cut(s) 433, 947
EcoO109I RGGNCCY 1 cut(s) 361
EcoRII CCWGG 1 cut(s) 1116
EcoRV GATATC 1 cut(s) 867
EcoT38I GRGCYC 4 cut(s) 52, 435, 949, 1230
Esp3I CGTCTC 1 cut(s) 1237
FalI AAGNNNNNCTT 2 cut(s) 755, 787
FaqI GGGAC 2 cut(s) 161, 349
FbaI TGATCA 1 cut(s) 880
FblI GTMKAC 1 cut(s) 81
Fnu4HI GCNGC 6 cut(s) 135, 689, 1011, 1124, 1146, 1149
FokI GGATG 1 cut(s) 76
FriOI GRGCYC 4 cut(s) 52, 435, 949, 1230
Fsp4HI GCNGC 6 cut(s) 135, 689, 1011, 1124, 1146, 1149
FspBI CTAG 4 cut(s) 620, 950, 1158, 1249
GluI GCNGC 6 cut(s) 135, 689, 1011, 1124, 1146, 1149
HaeIII GGCC 1 cut(s) 362
HapII CCGG 2 cut(s) 160, 1186
HincII GTYRAC 2 cut(s) 271, 281
HindII GTYRAC 2 cut(s) 271, 281
HindIII AAGCTT 1 cut(s) 56
HinfI GANTC 6 cut(s) 98, 149, 163, 539, 651, 695
HpaII CCGG 2 cut(s) 160, 1186
HphI GGTGA 4 cut(s) 7, 572, 788, 1106
Hpy166II GTNNAC 4 cut(s) 82, 271, 281, 889
Hpy188I TCNGA 7 cut(s) 131, 250, 522, 700, 747, 762, 1059
Hpy188III TCNNGA 8 cut(s) 167, 443, 655, 974, 995, 1082, 1158, 1208
Hpy8I GTNNAC 4 cut(s) 82, 271, 281, 889
HpyAV CCTTC 4 cut(s) 64, 178, 857, 1126
HpyCH4III ACNGT 2 cut(s) 285, 1092
HpyCH4IV ACGT 3 cut(s) 854, 885, 1166
HpyCH4V TGCA 5 cut(s) 110, 124, 628, 1097, 1151
HpyF10VI GCNNNNNNNGC 3 cut(s) 542, 858, 1076
HpyF3I CTNAG 6 cut(s) 249, 429, 727, 965, 1056, 1071
HpySE526I ACGT 3 cut(s) 854, 885, 1166
Ksp22I TGATCA 1 cut(s) 880
Kzo9I GATC 5 cut(s) 508, 880, 1036, 1047, 1111
LguI GCTCTTC 1 cut(s) 2
LmnI GCTCC 4 cut(s) 55, 1120, 1135, 1225
Lsp1109I GCAGC 5 cut(s) 146, 675, 997, 1135, 1135
LweI GCATC 1 cut(s) 21
MaeI CTAG 4 cut(s) 620, 950, 1158, 1249
MaeII ACGT 3 cut(s) 854, 885, 1166
MaeIII GTNAC 2 cut(s) 205, 219
MalI GATC 5 cut(s) 510, 882, 1038, 1049, 1113
MbiI CCGCTC 1 cut(s) 243
MboI GATC 5 cut(s) 508, 880, 1036, 1047, 1111
MboII GAAGA 4 cut(s) 19, 379, 775, 1173
MhlI GDGCHC 5 cut(s) 52, 435, 943, 949, 1230
MluCI AATT 3 cut(s) 370, 578, 780
MlyI GAGTC 3 cut(s) 143, 660, 704
MseI TTAA 5 cut(s) 66, 425, 455, 528, 816
MslI CAYNNNNRTG 3 cut(s) 250, 558, 936
MspA1I CMGCKG 5 cut(s) 836, 861, 1010, 1126, 1145
MspI CCGG 2 cut(s) 160, 1186
MspR9I CCNGG 3 cut(s) 160, 1118, 1186
MvaI CCWGG 1 cut(s) 1118
MwoI GCNNNNNNNGC 3 cut(s) 542, 858, 1076
NciI CCSGG 2 cut(s) 160, 1186
NdeII GATC 5 cut(s) 508, 880, 1036, 1047, 1111
NlaIV GGNNCC 3 cut(s) 51, 940, 1227
NmuCI GTSAC 2 cut(s) 205, 219
NspI RCATGY 3 cut(s) 279, 877, 935
PaeI GCATGC 1 cut(s) 877
PciI ACATGT 1 cut(s) 275
PciSI GCTCTTC 1 cut(s) 2
PfeI GAWTC 3 cut(s) 98, 163, 539
PflFI GACNNNGTC 1 cut(s) 1028
PkrI GCNGC 6 cut(s) 136, 690, 1012, 1125, 1147, 1150
PleI GAGTC 3 cut(s) 143, 659, 703
PpsI GAGTC 3 cut(s) 143, 659, 703
Ppu21I YACGTR 1 cut(s) 855
PscI ACATGT 1 cut(s) 275
PshAI GACNNNNGTC 1 cut(s) 276
Psp124BI GAGCTC 2 cut(s) 435, 949
Psp1406I AACGTT 1 cut(s) 1166
Psp6I CCWGG 1 cut(s) 1116
PspGI CCWGG 1 cut(s) 1116
PspN4I GGNNCC 3 cut(s) 51, 940, 1227
PspPI GGNCC 1 cut(s) 361
PstNI CAGNNNCTG 3 cut(s) 698, 1013, 1148
PsyI GACNNNGTC 1 cut(s) 1028
PvuII CAGCTG 3 cut(s) 836, 861, 1010
RsaI GTAC 2 cut(s) 27, 857
RsaNI GTAC 2 cut(s) 26, 856
RseI CAYNNNNRTG 3 cut(s) 250, 558, 936
SacI GAGCTC 2 cut(s) 435, 949
SapI GCTCTTC 1 cut(s) 2
SaqAI TTAA 5 cut(s) 66, 425, 455, 528, 816
SatI GCNGC 6 cut(s) 135, 689, 1011, 1124, 1146, 1149
Sau3AI GATC 5 cut(s) 508, 880, 1036, 1047, 1111
Sau96I GGNCC 1 cut(s) 361
SchI GAGTC 3 cut(s) 143, 660, 704
ScrFI CCNGG 3 cut(s) 160, 1118, 1186
SduI GDGCHC 5 cut(s) 52, 435, 943, 949, 1230
SfaNI GCATC 1 cut(s) 21
SmiMI CAYNNNNRTG 3 cut(s) 250, 558, 936
SmlI CTYRAG 4 cut(s) 167, 443, 677, 1208
SmoI CTYRAG 4 cut(s) 167, 443, 677, 1208
SphI GCATGC 1 cut(s) 877
Sse9I AATT 3 cut(s) 370, 578, 780
SsiI CCGC 4 cut(s) 241, 917, 1126, 1145
SspMI CTAG 4 cut(s) 620, 950, 1158, 1249
SstI GAGCTC 2 cut(s) 435, 949
StyD4I CCNGG 3 cut(s) 158, 1116, 1184
TaaI ACNGT 2 cut(s) 285, 1092
TaiI ACGT 3 cut(s) 857, 888, 1169
TaqI TCGA 1 cut(s) 1110
TaqII GACCGA 1 cut(s) 337
TasI AATT 3 cut(s) 370, 578, 780
TauI GCSGC 1 cut(s) 1148
TfiI GAWTC 3 cut(s) 98, 163, 539
Tru1I TTAA 5 cut(s) 66, 425, 455, 528, 816
Tru9I TTAA 5 cut(s) 66, 425, 455, 528, 816
TscAI CASTG 2 cut(s) 50, 214
TseFI GTSAC 2 cut(s) 205, 219
TseI GCWGC 5 cut(s) 134, 688, 1010, 1123, 1148
Tsp45I GTSAC 2 cut(s) 205, 219
TspDTI ATGAA 3 cut(s) 78, 401, 1094
TspRI CASTG 2 cut(s) 50, 214
Tth111I GACNNNGTC 1 cut(s) 1028
XapI RAATTY 2 cut(s) 370, 578
XbaI TCTAGA 1 cut(s) 1157
XceI RCATGY 3 cut(s) 279, 877, 935
XmiI GTMKAC 1 cut(s) 81
XspI CTAG 4 cut(s) 620, 950, 1158, 1249
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.