Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0017319

Physical Location & Seq

Genomic Coordinates Reverse (-)

7852870 .. 7853157

Gene Structure 288 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ16807

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGCTGAGGACGATGGTGTCGCAGTTCGTGAAGCACGAGTGCATTGAAACCGCTGTTGCCAAGGCAAAAGAGGTTCGACATCAAGCTGATAGAGTGGTACAGCGTGGAAAAGATGGTTCACTCGCTGCAGCGAGGAGTTATGTAGAAAATAGGAAGATACTCTTGGTTTCATTTAAATATGTATCTACATTTTTGTTTGTGCTATTGTTTGATGTTTGTCATAGAAGGTTTGATCTTCTTCTTCCATACCGTAATTTTACATCAATGATAGTCCTCAAGGATGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0015934 GO:0022625 GO:0022626 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L17

Protein Analysis

95

Amino Acids

11.06

Weight (kDa)

9.86

Isoelectric Point (pI)

36.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L17	PF01196	1 - 48	2.9e-11	Ribosomal protein L17

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0017319)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g01560
prunus_persica	Prupe.6G158000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0104481 RchiOBHm_Chr7g0188221
rosa_laevigata	RLG00000018141 RLG00000018475 RLG00000018478
rosa_multiflora	Rmu_sc0005837.1_g000005 Rmu_sc0008750.1_g000015
rosa_roxburghii	Rroxscaffold_3G00249030 Rroxscaffold_7G00211070
rosa_samantha	Rh2CG043900 Rh7AG093500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	16
AciI	CCGC	1 cut(s)	51
AfaI	GTAC	1 cut(s)	99
AgsI	TTSAA	1 cut(s)	47
AjuI	GAANNNNNNNTTGG	2 cut(s)	146, 178
AluBI	AGCT	1 cut(s)	86
AluI	AGCT	1 cut(s)	86
ApeKI	GCWGC	2 cut(s)	125, 128
BauI	CACGAG	1 cut(s)	35
BbvCI	CCTCAGC	1 cut(s)	5
BbvI	GCAGC	2 cut(s)	112, 140
BccI	CCATC	2 cut(s)	7, 107
BfmI	CTRYAG	1 cut(s)	126
BisI	GCNGC	2 cut(s)	126, 129
BlsI	GCNGC	2 cut(s)	127, 130
Bpu10I	CCTNAGC	1 cut(s)	5
BpuEI	CTTGAG	1 cut(s)	260
BsaJI	CCNNGG	1 cut(s)	60
BseDI	CCNNGG	1 cut(s)	60
BseGI	GGATG	1 cut(s)	286
BseRI	GAGGAG	1 cut(s)	148
BseXI	GCAGC	2 cut(s)	112, 140
Bsp143I	GATC	1 cut(s)	232
BspACI	CCGC	1 cut(s)	51
BspMAI	CTGCAG	1 cut(s)	130
BssECI	CCNNGG	1 cut(s)	60
BssMI	GATC	1 cut(s)	232
BssSI	CACGAG	1 cut(s)	35
BssT1I	CCWWGG	1 cut(s)	60
Bst2BI	CACGAG	1 cut(s)	35
Bst4CI	ACNGT	1 cut(s)	251
BstDEI	CTNAG	1 cut(s)	5
BstF5I	GGATG	1 cut(s)	286
BstKTI	GATC	1 cut(s)	235
BstMBI	GATC	1 cut(s)	232
BstSFI	CTRYAG	1 cut(s)	126
BstV1I	GCAGC	2 cut(s)	112, 140
BtsCI	GGATG	1 cut(s)	286
Csp6I	GTAC	1 cut(s)	98
CviJI	RGCY	1 cut(s)	86
CviKI_1	RGCY	1 cut(s)	86
CviQI	GTAC	1 cut(s)	98
DdeI	CTNAG	1 cut(s)	5
DpnI	GATC	1 cut(s)	234
DpnII	GATC	1 cut(s)	232
DraI	TTTAAA	1 cut(s)	175
DrdI	GACNNNNNNGTC	1 cut(s)	16
DseDI	GACNNNNNNGTC	1 cut(s)	16
Eco130I	CCWWGG	1 cut(s)	60
EcoT14I	CCWWGG	1 cut(s)	60
ErhI	CCWWGG	1 cut(s)	60
FaiI	YATR	4 cut(s)	141, 180, 222, 247
FalI	AAGNNNNNCTT	2 cut(s)	146, 178
Fnu4HI	GCNGC	2 cut(s)	126, 129
Fsp4HI	GCNGC	2 cut(s)	126, 129
GluI	GCNGC	2 cut(s)	126, 129
Hpy166II	GTNNAC	1 cut(s)	119
Hpy188III	TCNNGA	1 cut(s)	28
Hpy8I	GTNNAC	1 cut(s)	119
HpyAV	CCTTC	1 cut(s)	219
HpyCH4III	ACNGT	1 cut(s)	251
HpyCH4V	TGCA	2 cut(s)	42, 128
HpyF3I	CTNAG	1 cut(s)	5
Kzo9I	GATC	1 cut(s)	232
Lsp1109I	GCAGC	2 cut(s)	112, 140
MalI	GATC	1 cut(s)	234
MboI	GATC	1 cut(s)	232
MboII	GAAGA	4 cut(s)	166, 227, 230, 233
MluCI	AATT	1 cut(s)	253
MnlI	CCTC	3 cut(s)	64, 126, 284
MseI	TTAA	1 cut(s)	174
MspA1I	CMGCKG	1 cut(s)	53
NdeII	GATC	1 cut(s)	232
PcsI	WCGNNNNNNNCGW	1 cut(s)	33
PkrI	GCNGC	2 cut(s)	127, 130
PstI	CTGCAG	1 cut(s)	130
RsaI	GTAC	1 cut(s)	99
RsaNI	GTAC	1 cut(s)	98
SaqAI	TTAA	1 cut(s)	174
SatI	GCNGC	2 cut(s)	126, 129
Sau3AI	GATC	1 cut(s)	232
SetI	ASST	3 cut(s)	75, 88, 230
SfcI	CTRYAG	1 cut(s)	126
SgeI	CNNG	9 cut(s)	40, 47, 49, 73, 95, 116, 134, 144, 175
SmiI	ATTTAAAT	1 cut(s)	175
SmlI	CTYRAG	1 cut(s)	275
SmoI	CTYRAG	1 cut(s)	275
Sse9I	AATT	1 cut(s)	253
SsiI	CCGC	1 cut(s)	51
StyI	CCWWGG	1 cut(s)	60
SwaI	ATTTAAAT	1 cut(s)	175
TaaI	ACNGT	1 cut(s)	251
TaqI	TCGA	1 cut(s)	76
TasI	AATT	1 cut(s)	253
Tru1I	TTAA	1 cut(s)	174
Tru9I	TTAA	1 cut(s)	174
TseI	GCWGC	2 cut(s)	125, 128
TspDTI	ATGAA	1 cut(s)	159

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.