Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0008477

Physical Location & Seq

Genomic Coordinates Forward (+)

14199350 .. 14202518

Gene Structure 3169 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G158000.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGACGAAGTTCAGGAAGCTCAACCGACCCACGGGTCACCGCATGTCCATGCTCAGGACGATGGTGTCACAGTTGGTGAAGCACGAGCGGATTGAAACCACTGTTGCCAAGGCCAAAGAGATTCGACGTGAAGCTGATAAAATGGTGCAGCTTGGAAAAGATGGTTCCCTTTGTGCTGTAAGGCGTGCTGCTGCTTTTGTGCGTGGGGATGATGTAATGCACAAGCTGTTTACAGAATTAGCTTATCGATACAAAGATCGAACAGGTGGATACACAAGACTACTTCGGACTCGTATACGAGTTGGTGATGCTGCACCTATGGCCTATATTGAGTTCATTGACAGAGAAAATGAGCTCAGACAATCAAAACCACCAGCTCCTCAACCACAGAGAGTTCCCTTGGATCCTTGGGCAAGGTCGAAGCTTTGCAAGCAGTTTGCACCACCCAAAGAAGATAAGAGCTCAGATATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0015934 GO:0022625 GO:0022626 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L17

Protein Analysis

158

Amino Acids

18.17

Weight (kDa)

10.27

Isoelectric Point (pI)

53.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008477)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09770 AT5G64650
fragaria_vesca	FvH4_3g14560 FvH4_3g14560 FvH4_3g14560 FvH4_3g14560 FvH4_3g14560
malus_domestica	MD01G1012100.v1.1 MD15G1337900.v1.1
prunus_persica	Prupe.6G158000_v2.0.a1 Prupe.6G158000_v2.0.a1
pyrus_communis	pycom01g04310 pycom15g28860
rosa_chinensis	RchiOBHm_Chr5g0024011
rosa_laevigata	RLG00000032754
rosa_multiflora	Rmu_sc0005837.1_g000012 Rmu_sc0011761.1_g000001
rosa_roxburghii	Rroxscaffold_1G00055230
rosa_rugosa	Rorug05G0080700
rosa_samantha	Rh5BG167900 Rh5CG183400 Rh5DG170100
rosa_wichuraiana	Rw5G015490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	33, 64
AccBSI	CCGCTC	1 cut(s)	88
AccI	GTMKAC	1 cut(s)	295
AciI	CCGC	2 cut(s)	40, 88
AclWI	GGATC	2 cut(s)	398, 411
AfiI	CCNNNNNNNGG	2 cut(s)	31, 54
AgsI	TTSAA	1 cut(s)	95
AjiI	CACGTC	1 cut(s)	128
AluBI	AGCT	9 cut(s)	19, 134, 151, 226, 242, 355, 377, 424, 462
AluI	AGCT	9 cut(s)	19, 134, 151, 226, 242, 355, 377, 424, 462
Alw21I	GWGCWC	2 cut(s)	357, 464
AlwI	GGATC	2 cut(s)	398, 411
AoxI	GGCC	2 cut(s)	111, 321
ApeKI	GCWGC	4 cut(s)	148, 188, 191, 311
AsuHPI	GGTGA	3 cut(s)	29, 88, 317
BamHI	GGATCC	1 cut(s)	403
BanII	GRGCYC	2 cut(s)	357, 464
BauI	CACGAG	1 cut(s)	83
Bbv12I	GWGCWC	2 cut(s)	357, 464
BbvI	GCAGC	4 cut(s)	160, 175, 178, 298
BccI	CCATC	2 cut(s)	55, 155
BciVI	GTATCC	1 cut(s)	263
BfuI	GTATCC	1 cut(s)	263
BisI	GCNGC	4 cut(s)	149, 189, 192, 312
BlsI	GCNGC	4 cut(s)	150, 190, 193, 313
BmgBI	CACGTC	1 cut(s)	128
BmiI	GGNNCC	2 cut(s)	166, 405
BmsI	GCATC	1 cut(s)	298
Bpu10I	CCTNAGC	1 cut(s)	53
Bsa29I	ATCGAT	1 cut(s)	247
BsaJI	CCNNGG	4 cut(s)	30, 108, 399, 407
Bsc4I	CCNNNNNNNGG	2 cut(s)	31, 54
BseCI	ATCGAT	1 cut(s)	247
BseDI	CCNNGG	4 cut(s)	30, 108, 399, 407
BseGI	GGATG	1 cut(s)	214
BseLI	CCNNNNNNNGG	2 cut(s)	31, 54
BseMII	CTCAG	2 cut(s)	67, 370
BseRI	GAGGAG	1 cut(s)	369
BseXI	GCAGC	4 cut(s)	160, 175, 178, 298
BsgI	GTGCAG	2 cut(s)	167, 297
BshFI	GGCC	2 cut(s)	113, 323
BshVI	ATCGAT	1 cut(s)	247
BsiHKAI	GWGCWC	2 cut(s)	357, 464
BslI	CCNNNNNNNGG	2 cut(s)	31, 54
BsnI	GGCC	2 cut(s)	113, 323
Bsp1286I	GDGCHC	2 cut(s)	357, 464
Bsp143I	GATC	2 cut(s)	256, 403
BspACI	CCGC	2 cut(s)	40, 88
BspANI	GGCC	2 cut(s)	113, 323
BspCNI	CTCAG	2 cut(s)	66, 369
BspDI	ATCGAT	1 cut(s)	247
BspLI	GGNNCC	2 cut(s)	166, 405
BspPI	GGATC	2 cut(s)	398, 411
BsrBI	CCGCTC	1 cut(s)	88
BssECI	CCNNGG	4 cut(s)	30, 108, 399, 407
BssMI	GATC	2 cut(s)	256, 403
BssNAI	GTATAC	1 cut(s)	296
BssSI	CACGAG	1 cut(s)	83
BssT1I	CCWWGG	3 cut(s)	108, 399, 407
Bst1107I	GTATAC	1 cut(s)	296
Bst2BI	CACGAG	1 cut(s)	83
Bst4CI	ACNGT	2 cut(s)	72, 103
BstC8I	GCNNGC	2 cut(s)	186, 431
BstDEI	CTNAG	3 cut(s)	53, 356, 463
BstDSI	CCRYGG	1 cut(s)	30
BstEII	GGTNACC	1 cut(s)	35
BstF5I	GGATG	1 cut(s)	214
BstKTI	GATC	2 cut(s)	259, 406
BstMBI	GATC	2 cut(s)	256, 403
BstMWI	GCNNNNNNNGC	2 cut(s)	320, 430
BstNSI	RCATGY	1 cut(s)	46
BstPI	GGTNACC	1 cut(s)	35
BstV1I	GCAGC	4 cut(s)	160, 175, 178, 298
BstX2I	RGATCY	1 cut(s)	403
BstYI	RGATCY	1 cut(s)	403
BstZ17I	GTATAC	1 cut(s)	296
Bsu15I	ATCGAT	1 cut(s)	247
BsuI	GTATCC	1 cut(s)	263
BsuRI	GGCC	2 cut(s)	113, 323
BsuTUI	ATCGAT	1 cut(s)	247
BtgI	CCRYGG	1 cut(s)	30
BtrI	CACGTC	1 cut(s)	128
BtsCI	GGATG	1 cut(s)	214
BtsIMutI	CAGTG	1 cut(s)	99
Cac8I	GCNNGC	2 cut(s)	186, 431
ClaI	ATCGAT	1 cut(s)	247
CviAII	CATG	2 cut(s)	43, 49
DdeI	CTNAG	3 cut(s)	53, 356, 463
DpnI	GATC	2 cut(s)	258, 405
DpnII	GATC	2 cut(s)	256, 403
DrdI	GACNNNNNNGTC	2 cut(s)	33, 64
DseDI	GACNNNNNNGTC	2 cut(s)	33, 64
Ecl136II	GAGCTC	2 cut(s)	355, 462
Eco130I	CCWWGG	3 cut(s)	108, 399, 407
Eco24I	GRGCYC	2 cut(s)	357, 464
Eco53kI	GAGCTC	2 cut(s)	355, 462
Eco91I	GGTNACC	1 cut(s)	35
EcoICRI	GAGCTC	2 cut(s)	355, 462
EcoO65I	GGTNACC	1 cut(s)	35
EcoT14I	CCWWGG	3 cut(s)	108, 399, 407
EcoT38I	GRGCYC	2 cut(s)	357, 464
ErhI	CCWWGG	3 cut(s)	108, 399, 407
FaeI	CATG	2 cut(s)	46, 52
FaiI	YATR	5 cut(s)	44, 50, 296, 320, 327
FatI	CATG	2 cut(s)	42, 48
FblI	GTMKAC	1 cut(s)	295
Fnu4HI	GCNGC	4 cut(s)	149, 189, 192, 312
FokI	GGATG	1 cut(s)	221
FriOI	GRGCYC	2 cut(s)	357, 464
Fsp4HI	GCNGC	4 cut(s)	149, 189, 192, 312
GluI	GCNGC	4 cut(s)	149, 189, 192, 312
HaeIII	GGCC	2 cut(s)	113, 323
Hin1II	CATG	2 cut(s)	46, 52
HindIII	AAGCTT	1 cut(s)	422
HinfI	GANTC	2 cut(s)	121, 289
HphI	GGTGA	3 cut(s)	29, 88, 317
Hpy166II	GTNNAC	2 cut(s)	231, 296
Hpy188I	TCNGA	3 cut(s)	288, 359, 466
Hpy188III	TCNNGA	2 cut(s)	13, 55
Hpy8I	GTNNAC	2 cut(s)	231, 296
Hpy99I	CGWCG	1 cut(s)	129
HpyCH4III	ACNGT	2 cut(s)	72, 103
HpyCH4IV	ACGT	1 cut(s)	127
HpyCH4V	TGCA	5 cut(s)	148, 220, 314, 429, 440
HpyF10VI	GCNNNNNNNGC	2 cut(s)	320, 430
HpyF3I	CTNAG	3 cut(s)	53, 356, 463
HpySE526I	ACGT	1 cut(s)	127
Hsp92II	CATG	2 cut(s)	46, 52
Kzo9I	GATC	2 cut(s)	256, 403
LmnI	GCTCC	1 cut(s)	382
LpnPI	CCDG	3 cut(s)	40, 249, 387
Lsp1109I	GCAGC	4 cut(s)	160, 175, 178, 298
LweI	GCATC	1 cut(s)	298
MaeII	ACGT	1 cut(s)	127
MaeIII	GTNAC	2 cut(s)	35, 66
MalI	GATC	2 cut(s)	258, 405
MbiI	CCGCTC	1 cut(s)	88
MboI	GATC	2 cut(s)	256, 403
MboII	GAAGA	1 cut(s)	464
MflI	RGATCY	1 cut(s)	403
MhlI	GDGCHC	2 cut(s)	357, 464
MluCI	AATT	1 cut(s)	236
MlyI	GAGTC	1 cut(s)	283
MnlI	CCTC	1 cut(s)	390
MslI	CAYNNNNRTG	1 cut(s)	47
MwoI	GCNNNNNNNGC	2 cut(s)	320, 430
NdeII	GATC	2 cut(s)	256, 403
NlaIII	CATG	2 cut(s)	46, 52
NlaIV	GGNNCC	2 cut(s)	166, 405
NmuCI	GTSAC	2 cut(s)	35, 66
NspI	RCATGY	1 cut(s)	46
PfeI	GAWTC	1 cut(s)	121
PkrI	GCNGC	4 cut(s)	150, 190, 193, 313
PleI	GAGTC	1 cut(s)	283
PpsI	GAGTC	1 cut(s)	283
Psp124BI	GAGCTC	2 cut(s)	357, 464
PspEI	GGTNACC	1 cut(s)	35
PspN4I	GGNNCC	2 cut(s)	166, 405
PsuI	RGATCY	1 cut(s)	403
RseI	CAYNNNNRTG	1 cut(s)	47
SacI	GAGCTC	2 cut(s)	357, 464
SatI	GCNGC	4 cut(s)	149, 189, 192, 312
Sau3AI	GATC	2 cut(s)	256, 403
SchI	GAGTC	1 cut(s)	283
SduI	GDGCHC	2 cut(s)	357, 464
SfaNI	GCATC	1 cut(s)	298
SmiMI	CAYNNNNRTG	1 cut(s)	47
Sse9I	AATT	1 cut(s)	236
SsiI	CCGC	2 cut(s)	40, 88
SstI	GAGCTC	2 cut(s)	357, 464
StyI	CCWWGG	3 cut(s)	108, 399, 407
TaaI	ACNGT	2 cut(s)	72, 103
TaiI	ACGT	1 cut(s)	130
TaqI	TCGA	4 cut(s)	124, 247, 259, 419
TasI	AATT	1 cut(s)	236
TfiI	GAWTC	1 cut(s)	121
TscAI	CASTG	1 cut(s)	106
TseFI	GTSAC	2 cut(s)	35, 66
TseI	GCWGC	4 cut(s)	148, 188, 191, 311
Tsp45I	GTSAC	2 cut(s)	35, 66
TspDTI	ATGAA	1 cut(s)	325
TspRI	CASTG	1 cut(s)	106
XceI	RCATGY	1 cut(s)	46
XmiI	GTMKAC	1 cut(s)	295

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.