Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0008477

Physical Location & Seq

Genomic Coordinates Reverse (-)

18671054 .. 18673432

Gene Structure 2379 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000032754

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGGTGCCAGCAATTTCGTCACCGTCTCCCTTTTCTCATCTCCCTGTCTTCGTTAATCGGAAACTACTCAAGAGAATGACTAAGTTAAGGAAGCTGAACCGAACCACAGCTCATCGCATATCTATGCTGAGGACGATGGTGTCGCAGTTGGTGAAGCACGAGCGCATTGAAACCACCGTTGCCAAGGCAAAAGAGGTTCGACGTCAGGCTGATAGAATGGTGCAGCTTGGAAAAGATGGTTCACTCTGTGCGGCAAGGCGTGCTGCTGCTTTTGTGCGTGGGGATGATGTAATTCACAAGCTATTTACCGAACTGGCCTATCGATACAAAGATCGAGTAGGCGGATATACAAGACTGCTTCGGACACGTATACGAGTTGGTGATGCTGCACCCATGGCCTATATTGAGTTCATTGACAGAGAAAATGAGCTCAGAGAATCAAAACCACCGGCCCCTCAACCACCACCACCAAGAGTTCCCTTGGATCCTTGGGCAAGATCCAAGCTTTGCAAGCAGTTTGCACCCCCTAAAGAAGATAAAAACAAGAGTTCCGAGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0015934 GO:0022625 GO:0022626 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L17

Protein Analysis

187

Amino Acids

21.33

Weight (kDa)

10.62

Isoelectric Point (pI)

55.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L17	PF01196	42 - 138	4.3e-35	Ribosomal protein L17

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008477)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09770 AT5G64650
fragaria_vesca	FvH4_3g14560 FvH4_3g14560 FvH4_3g14560 FvH4_3g14560 FvH4_3g14560
malus_domestica	MD01G1012100.v1.1 MD15G1337900.v1.1
prunus_persica	Prupe.6G158000_v2.0.a1 Prupe.6G158000_v2.0.a1
pyrus_communis	pycom01g04310 pycom15g28860
rosa_chinensis	RchiOBHm_Chr5g0024011
rosa_laevigata	RLG00000032754
rosa_multiflora	Rmu_sc0005837.1_g000012 Rmu_sc0011761.1_g000001
rosa_roxburghii	Rroxscaffold_1G00055230
rosa_rugosa	Rorug05G0080700
rosa_samantha	Rh5BG167900 Rh5CG183400 Rh5DG170100
rosa_wichuraiana	Rw5G015490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	139
AatII	GACGTC	1 cut(s)	205
AccB1I	GGYRCC	1 cut(s)	4
AccI	GTMKAC	1 cut(s)	370
AciI	CCGC	2 cut(s)	251, 342
AclWI	GGATC	3 cut(s)	479, 492, 492
AcyI	GRCGYC	1 cut(s)	202
AdeI	CACNNNGTG	1 cut(s)	248
AflIII	ACRYGT	1 cut(s)	365
AgsI	TTSAA	1 cut(s)	170
AluBI	AGCT	6 cut(s)	94, 110, 226, 301, 430, 505
AluI	AGCT	6 cut(s)	94, 110, 226, 301, 430, 505
Alw21I	GWGCWC	1 cut(s)	432
Alw26I	GTCTC	1 cut(s)	30
AlwI	GGATC	3 cut(s)	479, 492, 492
AoxI	GGCC	3 cut(s)	315, 396, 450
ApeKI	GCWGC	4 cut(s)	223, 263, 266, 386
AspLEI	GCGC	1 cut(s)	165
AspS9I	GGNCC	1 cut(s)	451
AsuHPI	GGTGA	3 cut(s)	12, 163, 392
BamHI	GGATCC	1 cut(s)	484
BanI	GGYRCC	1 cut(s)	4
BanII	GRGCYC	1 cut(s)	432
BauI	CACGAG	1 cut(s)	158
BbsI	GAAGAC	1 cut(s)	40
Bbv12I	GWGCWC	1 cut(s)	432
BbvCI	CCTCAGC	1 cut(s)	128
BbvI	GCAGC	4 cut(s)	235, 250, 253, 373
BccI	CCATC	2 cut(s)	130, 230
BcoDI	GTCTC	1 cut(s)	30
BisI	GCNGC	5 cut(s)	224, 252, 264, 267, 387
BlsI	GCNGC	5 cut(s)	225, 253, 265, 268, 388
BmgT120I	GGNCC	1 cut(s)	451
BmiI	GGNNCC	3 cut(s)	6, 453, 486
BmsI	GCATC	1 cut(s)	373
BpiI	GAAGAC	1 cut(s)	40
Bpu10I	CCTNAGC	1 cut(s)	128
BpuEI	CTTGAG	1 cut(s)	53
Bsa29I	ATCGAT	1 cut(s)	322
BsaAI	YACGTR	1 cut(s)	368
BsaHI	GRCGYC	1 cut(s)	202
BsaJI	CCNNGG	4 cut(s)	183, 393, 480, 488
Bse118I	RCCGGY	1 cut(s)	448
Bse1I	ACTGG	1 cut(s)	318
BseCI	ATCGAT	1 cut(s)	322
BseDI	CCNNGG	4 cut(s)	183, 393, 480, 488
BseGI	GGATG	1 cut(s)	289
BseMII	CTCAG	2 cut(s)	119, 445
BseNI	ACTGG	1 cut(s)	318
BseXI	GCAGC	4 cut(s)	235, 250, 253, 373
BsgI	GTGCAG	2 cut(s)	242, 372
BshFI	GGCC	3 cut(s)	317, 398, 452
BshNI	GGYRCC	1 cut(s)	4
BshVI	ATCGAT	1 cut(s)	322
BsiHKAI	GWGCWC	1 cut(s)	432
BsiSI	CCGG	1 cut(s)	449
BsmAI	GTCTC	1 cut(s)	30
BsmBI	CGTCTC	1 cut(s)	30
BsnI	GGCC	3 cut(s)	317, 398, 452
Bsp1286I	GDGCHC	1 cut(s)	432
Bsp143I	GATC	3 cut(s)	331, 484, 497
Bsp19I	CCATGG	1 cut(s)	393
BspACI	CCGC	2 cut(s)	251, 342
BspANI	GGCC	3 cut(s)	317, 398, 452
BspCNI	CTCAG	2 cut(s)	120, 444
BspDI	ATCGAT	1 cut(s)	322
BspLI	GGNNCC	3 cut(s)	6, 453, 486
BspPI	GGATC	3 cut(s)	479, 492, 492
BspT107I	GGYRCC	1 cut(s)	4
BsrFI	RCCGGY	1 cut(s)	448
BsrI	ACTGG	1 cut(s)	318
BssAI	RCCGGY	1 cut(s)	448
BssECI	CCNNGG	4 cut(s)	183, 393, 480, 488
BssMI	GATC	3 cut(s)	331, 484, 497
BssNAI	GTATAC	1 cut(s)	371
BssNI	GRCGYC	1 cut(s)	202
BssSI	CACGAG	1 cut(s)	158
BssT1I	CCWWGG	4 cut(s)	183, 393, 480, 488
Bst1107I	GTATAC	1 cut(s)	371
Bst2BI	CACGAG	1 cut(s)	158
Bst4CI	ACNGT	2 cut(s)	24, 178
BstACI	GRCGYC	1 cut(s)	202
BstAPI	GCANNNNNTGC	1 cut(s)	260
BstBAI	YACGTR	1 cut(s)	368
BstC8I	GCNNGC	3 cut(s)	9, 261, 512
BstDEI	CTNAG	3 cut(s)	81, 128, 431
BstDSI	CCRYGG	1 cut(s)	393
BstF5I	GGATG	1 cut(s)	289
BstHHI	GCGC	1 cut(s)	165
BstKTI	GATC	3 cut(s)	334, 487, 500
BstMAI	GTCTC	1 cut(s)	30
BstMBI	GATC	3 cut(s)	331, 484, 497
BstMWI	GCNNNNNNNGC	3 cut(s)	260, 395, 511
BstV1I	GCAGC	4 cut(s)	235, 250, 253, 373
BstV2I	GAAGAC	1 cut(s)	40
BstX2I	RGATCY	2 cut(s)	484, 497
BstYI	RGATCY	2 cut(s)	484, 497
BstZ17I	GTATAC	1 cut(s)	371
Bsu15I	ATCGAT	1 cut(s)	322
BsuRI	GGCC	3 cut(s)	317, 398, 452
BsuTUI	ATCGAT	1 cut(s)	322
BtgI	CCRYGG	1 cut(s)	393
BtgZI	GCGATG	1 cut(s)	98
BtsCI	GGATG	1 cut(s)	289
Cac8I	GCNNGC	3 cut(s)	9, 261, 512
CfoI	GCGC	1 cut(s)	165
Cfr10I	RCCGGY	1 cut(s)	448
Cfr13I	GGNCC	1 cut(s)	451
ClaI	ATCGAT	1 cut(s)	322
CviAII	CATG	1 cut(s)	394
DdeI	CTNAG	3 cut(s)	81, 128, 431
DpnI	GATC	3 cut(s)	333, 486, 499
DpnII	GATC	3 cut(s)	331, 484, 497
DraIII	CACNNNGTG	1 cut(s)	248
DrdI	GACNNNNNNGTC	1 cut(s)	139
DseDI	GACNNNNNNGTC	1 cut(s)	139
EciI	GGCGGA	1 cut(s)	357
Ecl136II	GAGCTC	1 cut(s)	430
Eco130I	CCWWGG	4 cut(s)	183, 393, 480, 488
Eco24I	GRGCYC	1 cut(s)	432
Eco53kI	GAGCTC	1 cut(s)	430
EcoICRI	GAGCTC	1 cut(s)	430
EcoT14I	CCWWGG	4 cut(s)	183, 393, 480, 488
EcoT38I	GRGCYC	1 cut(s)	432
ErhI	CCWWGG	4 cut(s)	183, 393, 480, 488
Esp3I	CGTCTC	1 cut(s)	30
FaeI	CATG	1 cut(s)	397
FaiI	YATR	6 cut(s)	119, 125, 348, 371, 395, 402
FatI	CATG	1 cut(s)	393
FblI	GTMKAC	1 cut(s)	370
Fnu4HI	GCNGC	5 cut(s)	224, 252, 264, 267, 387
FokI	GGATG	1 cut(s)	296
FriOI	GRGCYC	1 cut(s)	432
Fsp4HI	GCNGC	5 cut(s)	224, 252, 264, 267, 387
GlaI	GCGC	1 cut(s)	164
GluI	GCNGC	5 cut(s)	224, 252, 264, 267, 387
HaeIII	GGCC	3 cut(s)	317, 398, 452
HapII	CCGG	1 cut(s)	449
HhaI	GCGC	1 cut(s)	165
Hin1I	GRCGYC	1 cut(s)	202
Hin1II	CATG	1 cut(s)	397
Hin6I	GCGC	1 cut(s)	163
HinP1I	GCGC	1 cut(s)	163
HindIII	AAGCTT	1 cut(s)	503
HinfI	GANTC	1 cut(s)	437
HpaII	CCGG	1 cut(s)	449
HphI	GGTGA	3 cut(s)	12, 163, 392
Hpy166II	GTNNAC	2 cut(s)	242, 371
Hpy188I	TCNGA	4 cut(s)	60, 363, 434, 553
Hpy188III	TCNNGA	1 cut(s)	70
Hpy8I	GTNNAC	2 cut(s)	242, 371
Hpy99I	CGWCG	1 cut(s)	204
HpyCH4III	ACNGT	2 cut(s)	24, 178
HpyCH4IV	ACGT	2 cut(s)	202, 367
HpyCH4V	TGCA	4 cut(s)	223, 389, 510, 521
HpyF10VI	GCNNNNNNNGC	3 cut(s)	260, 395, 511
HpyF3I	CTNAG	3 cut(s)	81, 128, 431
HpySE526I	ACGT	2 cut(s)	202, 367
Hsp92I	GRCGYC	1 cut(s)	202
Hsp92II	CATG	1 cut(s)	397
HspAI	GCGC	1 cut(s)	163
Kzo9I	GATC	3 cut(s)	331, 484, 497
LpnPI	CCDG	5 cut(s)	21, 57, 191, 299, 462
Lsp1109I	GCAGC	4 cut(s)	235, 250, 253, 373
LweI	GCATC	1 cut(s)	373
MaeII	ACGT	2 cut(s)	202, 367
MaeIII	GTNAC	1 cut(s)	18
MalI	GATC	3 cut(s)	333, 486, 499
MboI	GATC	3 cut(s)	331, 484, 497
MboII	GAAGA	2 cut(s)	40, 545
MflI	RGATCY	2 cut(s)	484, 497
MhlI	GDGCHC	1 cut(s)	432
MluCI	AATT	2 cut(s)	12, 291
MnlI	CCTC	3 cut(s)	123, 187, 465
MseI	TTAA	2 cut(s)	54, 86
MslI	CAYNNNNRTG	1 cut(s)	122
MspI	CCGG	1 cut(s)	449
MwoI	GCNNNNNNNGC	3 cut(s)	260, 395, 511
NcoI	CCATGG	1 cut(s)	393
NdeII	GATC	3 cut(s)	331, 484, 497
NlaIII	CATG	1 cut(s)	397
NlaIV	GGNNCC	3 cut(s)	6, 453, 486
NmuCI	GTSAC	1 cut(s)	18
PfeI	GAWTC	1 cut(s)	437
PkrI	GCNGC	5 cut(s)	225, 253, 265, 268, 388
Ppu21I	YACGTR	1 cut(s)	368
Psp124BI	GAGCTC	1 cut(s)	432
PspN4I	GGNNCC	3 cut(s)	6, 453, 486
PspPI	GGNCC	1 cut(s)	451
PsuI	RGATCY	2 cut(s)	484, 497
RseI	CAYNNNNRTG	1 cut(s)	122
SacI	GAGCTC	1 cut(s)	432
SaqAI	TTAA	2 cut(s)	54, 86
SatI	GCNGC	5 cut(s)	224, 252, 264, 267, 387
Sau3AI	GATC	3 cut(s)	331, 484, 497
Sau96I	GGNCC	1 cut(s)	451
SduI	GDGCHC	1 cut(s)	432
SetI	ASST	9 cut(s)	96, 112, 198, 205, 228, 303, 370, 432, 507
SfaNI	GCATC	1 cut(s)	373
SmiMI	CAYNNNNRTG	1 cut(s)	122
SmlI	CTYRAG	1 cut(s)	68
SmoI	CTYRAG	1 cut(s)	68
Sse9I	AATT	2 cut(s)	12, 291
SsiI	CCGC	2 cut(s)	251, 342
SstI	GAGCTC	1 cut(s)	432
StyI	CCWWGG	4 cut(s)	183, 393, 480, 488
TaaI	ACNGT	2 cut(s)	24, 178
TaiI	ACGT	2 cut(s)	205, 370
TaqI	TCGA	3 cut(s)	199, 322, 334
TasI	AATT	2 cut(s)	12, 291
TauI	GCSGC	1 cut(s)	254
TfiI	GAWTC	1 cut(s)	437
Tru1I	TTAA	2 cut(s)	54, 86
Tru9I	TTAA	2 cut(s)	54, 86
TseFI	GTSAC	1 cut(s)	18
TseI	GCWGC	4 cut(s)	223, 263, 266, 386
Tsp45I	GTSAC	1 cut(s)	18
TspDTI	ATGAA	1 cut(s)	400
XmiI	GTMKAC	1 cut(s)	370
ZraI	GACGTC	1 cut(s)	203

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.