Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011761.1

Orthogroup ID

OG0008477

Physical Location & Seq

Genomic Coordinates Reverse (-)

16681 .. 18409

Gene Structure 1729 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011761.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

atgatatcattacaacccaaagcaaaaaggcctgcaatttcgtcgccgtctcccttttctcatctccctgtcttcgttaatcggaaactactcaagagaatgactaagttaaggaagctgaaccgaaccacagctcatcgcatatctatgctgaggacgatggtgtcgcagttggtgaagcacgagcgcattgaaaccaccgttgccaaggcaaaagaggttcgacgtcaggctgatagaatggtgcagcttggaaaagatggttcactctgtgcggcgaggcgtgctgctgcttttgtgcgtggggatgatgtaattcacaagctatttaccgaactggcctatcgatacaaagatcgagtaggtggatatacaagactgcttcggacacgtatacgagttggtgatgctgcacccatggcctatattgagttcattgacagagaaaatgagctcagagaatcaaaaccaccggcccctcaaccaccaccaccaagagttcccttggatccttgggcaagatccaagctttgcaagcagtttgcaccccctaaagaagataaaaacaggagctccgagatttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0015934 GO:0022625 GO:0022626 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L17

Protein Analysis

194

Amino Acids

22.28

Weight (kDa)

10.85

Isoelectric Point (pI)

58.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008477)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09770 AT5G64650
fragaria_vesca	FvH4_3g14560 FvH4_3g14560 FvH4_3g14560 FvH4_3g14560 FvH4_3g14560
malus_domestica	MD01G1012100.v1.1 MD15G1337900.v1.1
prunus_persica	Prupe.6G158000_v2.0.a1 Prupe.6G158000_v2.0.a1
pyrus_communis	pycom01g04310 pycom15g28860
rosa_chinensis	RchiOBHm_Chr5g0024011
rosa_laevigata	RLG00000032754
rosa_multiflora	Rmu_sc0005837.1_g000012 Rmu_sc0011761.1_g000001
rosa_roxburghii	Rroxscaffold_1G00055230
rosa_rugosa	Rorug05G0080700
rosa_samantha	Rh5BG167900 Rh5CG183400 Rh5DG170100
rosa_wichuraiana	Rw5G015490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	163
AatII	GACGTC	1 cut(s)	229
AccI	GTMKAC	1 cut(s)	394
AciI	CCGC	1 cut(s)	275
AclWI	GGATC	3 cut(s)	503, 516, 516
AcyI	GRCGYC	1 cut(s)	226
AdeI	CACNNNGTG	1 cut(s)	272
AflIII	ACRYGT	1 cut(s)	389
AgsI	TTSAA	1 cut(s)	194
AluBI	AGCT	7 cut(s)	118, 134, 250, 325, 454, 529, 573
AluI	AGCT	7 cut(s)	118, 134, 250, 325, 454, 529, 573
Alw21I	GWGCWC	2 cut(s)	456, 575
Alw26I	GTCTC	1 cut(s)	54
AlwI	GGATC	3 cut(s)	503, 516, 516
AoxI	GGCC	4 cut(s)	29, 339, 420, 474
ApeKI	GCWGC	4 cut(s)	247, 287, 290, 410
AspLEI	GCGC	1 cut(s)	189
AspS9I	GGNCC	1 cut(s)	475
AsuHPI	GGTGA	2 cut(s)	187, 416
BamHI	GGATCC	1 cut(s)	508
BanII	GRGCYC	2 cut(s)	456, 575
BauI	CACGAG	1 cut(s)	182
BbsI	GAAGAC	1 cut(s)	64
Bbv12I	GWGCWC	2 cut(s)	456, 575
BbvCI	CCTCAGC	1 cut(s)	152
BbvI	GCAGC	4 cut(s)	259, 274, 277, 397
BccI	CCATC	2 cut(s)	154, 254
BceAI	ACGGC	1 cut(s)	31
BcgI	CGANNNNNNTGC	2 cut(s)	24, 58
BcoDI	GTCTC	1 cut(s)	54
BisI	GCNGC	5 cut(s)	248, 276, 288, 291, 411
BlsI	GCNGC	5 cut(s)	249, 277, 289, 292, 412
BmgT120I	GGNCC	1 cut(s)	475
BmiI	GGNNCC	2 cut(s)	477, 510
BmsI	GCATC	1 cut(s)	397
BpiI	GAAGAC	1 cut(s)	64
Bpu10I	CCTNAGC	1 cut(s)	152
BpuEI	CTTGAG	1 cut(s)	77
Bsa29I	ATCGAT	1 cut(s)	346
BsaAI	YACGTR	1 cut(s)	392
BsaHI	GRCGYC	1 cut(s)	226
BsaJI	CCNNGG	4 cut(s)	207, 417, 504, 512
BsaXI	ACNNNNNCTCC	1 cut(s)	557
Bse118I	RCCGGY	1 cut(s)	472
Bse1I	ACTGG	1 cut(s)	342
BseCI	ATCGAT	1 cut(s)	346
BseDI	CCNNGG	4 cut(s)	207, 417, 504, 512
BseGI	GGATG	1 cut(s)	313
BseMII	CTCAG	2 cut(s)	143, 469
BseNI	ACTGG	1 cut(s)	342
BseXI	GCAGC	4 cut(s)	259, 274, 277, 397
BsgI	GTGCAG	2 cut(s)	266, 396
BshFI	GGCC	4 cut(s)	31, 341, 422, 476
BshVI	ATCGAT	1 cut(s)	346
BsiHKAI	GWGCWC	2 cut(s)	456, 575
BsiSI	CCGG	1 cut(s)	473
BsmAI	GTCTC	1 cut(s)	54
BsmBI	CGTCTC	1 cut(s)	54
BsnI	GGCC	4 cut(s)	31, 341, 422, 476
Bsp1286I	GDGCHC	2 cut(s)	456, 575
Bsp143I	GATC	3 cut(s)	355, 508, 521
Bsp19I	CCATGG	1 cut(s)	417
BspACI	CCGC	1 cut(s)	275
BspANI	GGCC	4 cut(s)	31, 341, 422, 476
BspCNI	CTCAG	2 cut(s)	144, 468
BspDI	ATCGAT	1 cut(s)	346
BspLI	GGNNCC	2 cut(s)	477, 510
BspPI	GGATC	3 cut(s)	503, 516, 516
BsrFI	RCCGGY	1 cut(s)	472
BsrI	ACTGG	1 cut(s)	342
BssAI	RCCGGY	1 cut(s)	472
BssECI	CCNNGG	4 cut(s)	207, 417, 504, 512
BssMI	GATC	3 cut(s)	355, 508, 521
BssNAI	GTATAC	1 cut(s)	395
BssNI	GRCGYC	1 cut(s)	226
BssSI	CACGAG	1 cut(s)	182
BssT1I	CCWWGG	4 cut(s)	207, 417, 504, 512
Bst1107I	GTATAC	1 cut(s)	395
Bst2BI	CACGAG	1 cut(s)	182
Bst4CI	ACNGT	1 cut(s)	202
BstACI	GRCGYC	1 cut(s)	226
BstBAI	YACGTR	1 cut(s)	392
BstC8I	GCNNGC	3 cut(s)	33, 285, 536
BstDEI	CTNAG	3 cut(s)	105, 152, 455
BstDSI	CCRYGG	1 cut(s)	417
BstF5I	GGATG	1 cut(s)	313
BstHHI	GCGC	1 cut(s)	189
BstKTI	GATC	3 cut(s)	358, 511, 524
BstMAI	GTCTC	1 cut(s)	54
BstMBI	GATC	3 cut(s)	355, 508, 521
BstMWI	GCNNNNNNNGC	3 cut(s)	284, 419, 535
BstV1I	GCAGC	4 cut(s)	259, 274, 277, 397
BstV2I	GAAGAC	1 cut(s)	64
BstX2I	RGATCY	2 cut(s)	508, 521
BstYI	RGATCY	2 cut(s)	508, 521
BstZ17I	GTATAC	1 cut(s)	395
Bsu15I	ATCGAT	1 cut(s)	346
BsuRI	GGCC	4 cut(s)	31, 341, 422, 476
BsuTUI	ATCGAT	1 cut(s)	346
BtgI	CCRYGG	1 cut(s)	417
BtgZI	GCGATG	1 cut(s)	122
BtsCI	GGATG	1 cut(s)	313
Cac8I	GCNNGC	3 cut(s)	33, 285, 536
CfoI	GCGC	1 cut(s)	189
Cfr10I	RCCGGY	1 cut(s)	472
Cfr13I	GGNCC	1 cut(s)	475
ClaI	ATCGAT	1 cut(s)	346
CviAII	CATG	1 cut(s)	418
DdeI	CTNAG	3 cut(s)	105, 152, 455
DpnI	GATC	3 cut(s)	357, 510, 523
DpnII	GATC	3 cut(s)	355, 508, 521
DraIII	CACNNNGTG	1 cut(s)	272
DrdI	GACNNNNNNGTC	1 cut(s)	163
DseDI	GACNNNNNNGTC	1 cut(s)	163
Ecl136II	GAGCTC	2 cut(s)	454, 573
Eco130I	CCWWGG	4 cut(s)	207, 417, 504, 512
Eco147I	AGGCCT	1 cut(s)	31
Eco24I	GRGCYC	2 cut(s)	456, 575
Eco32I	GATATC	1 cut(s)	6
Eco53kI	GAGCTC	2 cut(s)	454, 573
EcoICRI	GAGCTC	2 cut(s)	454, 573
EcoRV	GATATC	1 cut(s)	6
EcoT14I	CCWWGG	4 cut(s)	207, 417, 504, 512
EcoT38I	GRGCYC	2 cut(s)	456, 575
ErhI	CCWWGG	4 cut(s)	207, 417, 504, 512
Esp3I	CGTCTC	1 cut(s)	54
FaeI	CATG	1 cut(s)	421
FaiI	YATR	6 cut(s)	143, 149, 372, 395, 419, 426
FatI	CATG	1 cut(s)	417
FblI	GTMKAC	1 cut(s)	394
Fnu4HI	GCNGC	5 cut(s)	248, 276, 288, 291, 411
FokI	GGATG	1 cut(s)	320
FriOI	GRGCYC	2 cut(s)	456, 575
Fsp4HI	GCNGC	5 cut(s)	248, 276, 288, 291, 411
GlaI	GCGC	1 cut(s)	188
GluI	GCNGC	5 cut(s)	248, 276, 288, 291, 411
HaeIII	GGCC	4 cut(s)	31, 341, 422, 476
HapII	CCGG	1 cut(s)	473
HhaI	GCGC	1 cut(s)	189
Hin1I	GRCGYC	1 cut(s)	226
Hin1II	CATG	1 cut(s)	421
Hin6I	GCGC	1 cut(s)	187
HinP1I	GCGC	1 cut(s)	187
HindIII	AAGCTT	1 cut(s)	527
HinfI	GANTC	1 cut(s)	461
HpaII	CCGG	1 cut(s)	473
HphI	GGTGA	2 cut(s)	187, 416
Hpy166II	GTNNAC	2 cut(s)	266, 395
Hpy188I	TCNGA	4 cut(s)	84, 387, 458, 577
Hpy188III	TCNNGA	1 cut(s)	94
Hpy8I	GTNNAC	2 cut(s)	266, 395
Hpy99I	CGWCG	2 cut(s)	46, 228
HpyCH4III	ACNGT	1 cut(s)	202
HpyCH4IV	ACGT	2 cut(s)	226, 391
HpyCH4V	TGCA	5 cut(s)	35, 247, 413, 534, 545
HpyF10VI	GCNNNNNNNGC	3 cut(s)	284, 419, 535
HpyF3I	CTNAG	3 cut(s)	105, 152, 455
HpySE526I	ACGT	2 cut(s)	226, 391
Hsp92I	GRCGYC	1 cut(s)	226
Hsp92II	CATG	1 cut(s)	421
HspAI	GCGC	1 cut(s)	187
Kzo9I	GATC	3 cut(s)	355, 508, 521
LmnI	GCTCC	2 cut(s)	570, 578
LpnPI	CCDG	6 cut(s)	45, 81, 215, 323, 486, 553
Lsp1109I	GCAGC	4 cut(s)	259, 274, 277, 397
LweI	GCATC	1 cut(s)	397
MaeII	ACGT	2 cut(s)	226, 391
MalI	GATC	3 cut(s)	357, 510, 523
MboI	GATC	3 cut(s)	355, 508, 521
MboII	GAAGA	2 cut(s)	64, 569
MflI	RGATCY	2 cut(s)	508, 521
MhlI	GDGCHC	2 cut(s)	456, 575
MluCI	AATT	2 cut(s)	36, 315
MnlI	CCTC	4 cut(s)	147, 211, 273, 489
MseI	TTAA	2 cut(s)	78, 110
MslI	CAYNNNNRTG	1 cut(s)	146
MspI	CCGG	1 cut(s)	473
MwoI	GCNNNNNNNGC	3 cut(s)	284, 419, 535
NcoI	CCATGG	1 cut(s)	417
NdeII	GATC	3 cut(s)	355, 508, 521
NlaIII	CATG	1 cut(s)	421
NlaIV	GGNNCC	2 cut(s)	477, 510
PceI	AGGCCT	1 cut(s)	31
PfeI	GAWTC	1 cut(s)	461
PkrI	GCNGC	5 cut(s)	249, 277, 289, 292, 412
Ppu21I	YACGTR	1 cut(s)	392
Psp124BI	GAGCTC	2 cut(s)	456, 575
PspN4I	GGNNCC	2 cut(s)	477, 510
PspPI	GGNCC	1 cut(s)	475
PsuI	RGATCY	2 cut(s)	508, 521
RseI	CAYNNNNRTG	1 cut(s)	146
SacI	GAGCTC	2 cut(s)	456, 575
SaqAI	TTAA	2 cut(s)	78, 110
SatI	GCNGC	5 cut(s)	248, 276, 288, 291, 411
Sau3AI	GATC	3 cut(s)	355, 508, 521
Sau96I	GGNCC	1 cut(s)	475
SduI	GDGCHC	2 cut(s)	456, 575
SfaNI	GCATC	1 cut(s)	397
SmiMI	CAYNNNNRTG	1 cut(s)	146
SmlI	CTYRAG	1 cut(s)	92
SmoI	CTYRAG	1 cut(s)	92
Sse9I	AATT	2 cut(s)	36, 315
SseBI	AGGCCT	1 cut(s)	31
SsiI	CCGC	1 cut(s)	275
SstI	GAGCTC	2 cut(s)	456, 575
StuI	AGGCCT	1 cut(s)	31
StyI	CCWWGG	4 cut(s)	207, 417, 504, 512
TaaI	ACNGT	1 cut(s)	202
TaiI	ACGT	2 cut(s)	229, 394
TaqI	TCGA	3 cut(s)	223, 346, 358
TasI	AATT	2 cut(s)	36, 315
TauI	GCSGC	1 cut(s)	278
TfiI	GAWTC	1 cut(s)	461
Tru1I	TTAA	2 cut(s)	78, 110
Tru9I	TTAA	2 cut(s)	78, 110
TseI	GCWGC	4 cut(s)	247, 287, 290, 410
TspDTI	ATGAA	1 cut(s)	424
XmiI	GTMKAC	1 cut(s)	394
ZraI	GACGTC	1 cut(s)	227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.