Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005837.1

Orthogroup ID

OG0008477

Physical Location & Seq

Genomic Coordinates Reverse (-)

43625 .. 45353

Gene Structure 1729 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005837.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

atgatatcattacaacccaaagcaaaaaggcctgcaatttcgtcgccgtctcccttttctcatctccgtgtcttcttcaatcggaaactactcaagagaatgactaagttaaggaagctgaaccgaaccacagctcatcgcatatctatgctgaggacgatggtgtcgcagttggtgaagcacgagcgcattgaaaccaccgttgccaaggcaaaagaggttcgacgtcaggctgatagaatggtgcagcttggaaaagatggttcactctgtgcggcgaggcgtgctgctgcttttgtgcgtggggatgatgtaattcacaagctatttaccgaactggcctatcgatacaaagatcgagtaggtggatatacaagactgcttcggacacgtatacgagttggtgatgctgcacccatggcctatattgagttcattgacagagaaaatgagctcagagaatcaaaaccaccggcccctcaaccaccaccaccaagagttcccttggatccttgggcaagatccaagctttgcaagcagtttgcaccccctaaagaagataaaaacaagagttccgagatttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0015934 GO:0022625 GO:0022626 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L17

Protein Analysis

194

Amino Acids

22.36

Weight (kDa)

10.86

Isoelectric Point (pI)

56.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008477)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09770 AT5G64650
fragaria_vesca	FvH4_3g14560 FvH4_3g14560 FvH4_3g14560 FvH4_3g14560 FvH4_3g14560
malus_domestica	MD01G1012100.v1.1 MD15G1337900.v1.1
prunus_persica	Prupe.6G158000_v2.0.a1 Prupe.6G158000_v2.0.a1
pyrus_communis	pycom01g04310 pycom15g28860
rosa_chinensis	RchiOBHm_Chr5g0024011
rosa_laevigata	RLG00000032754
rosa_multiflora	Rmu_sc0005837.1_g000012 Rmu_sc0011761.1_g000001
rosa_roxburghii	Rroxscaffold_1G00055230
rosa_rugosa	Rorug05G0080700
rosa_samantha	Rh5BG167900 Rh5CG183400 Rh5DG170100
rosa_wichuraiana	Rw5G015490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	163
AatII	GACGTC	1 cut(s)	229
AccI	GTMKAC	1 cut(s)	394
AciI	CCGC	1 cut(s)	275
AclWI	GGATC	3 cut(s)	503, 516, 516
AcyI	GRCGYC	1 cut(s)	226
AdeI	CACNNNGTG	1 cut(s)	272
AflIII	ACRYGT	1 cut(s)	389
AgsI	TTSAA	2 cut(s)	79, 194
AluBI	AGCT	6 cut(s)	118, 134, 250, 325, 454, 529
AluI	AGCT	6 cut(s)	118, 134, 250, 325, 454, 529
Alw21I	GWGCWC	1 cut(s)	456
Alw26I	GTCTC	1 cut(s)	54
AlwI	GGATC	3 cut(s)	503, 516, 516
AoxI	GGCC	4 cut(s)	29, 339, 420, 474
ApeKI	GCWGC	4 cut(s)	247, 287, 290, 410
AspLEI	GCGC	1 cut(s)	189
AspS9I	GGNCC	1 cut(s)	475
AsuHPI	GGTGA	2 cut(s)	187, 416
BamHI	GGATCC	1 cut(s)	508
BanII	GRGCYC	1 cut(s)	456
BauI	CACGAG	1 cut(s)	182
BbsI	GAAGAC	1 cut(s)	64
Bbv12I	GWGCWC	1 cut(s)	456
BbvCI	CCTCAGC	1 cut(s)	152
BbvI	GCAGC	4 cut(s)	259, 274, 277, 397
BccI	CCATC	2 cut(s)	154, 254
BceAI	ACGGC	1 cut(s)	31
BcgI	CGANNNNNNTGC	2 cut(s)	24, 58
BcoDI	GTCTC	1 cut(s)	54
BisI	GCNGC	5 cut(s)	248, 276, 288, 291, 411
BlsI	GCNGC	5 cut(s)	249, 277, 289, 292, 412
BmgT120I	GGNCC	1 cut(s)	475
BmiI	GGNNCC	2 cut(s)	477, 510
BmsI	GCATC	1 cut(s)	397
BpiI	GAAGAC	1 cut(s)	64
Bpu10I	CCTNAGC	1 cut(s)	152
BpuEI	CTTGAG	1 cut(s)	77
Bsa29I	ATCGAT	1 cut(s)	346
BsaAI	YACGTR	1 cut(s)	392
BsaHI	GRCGYC	1 cut(s)	226
BsaJI	CCNNGG	4 cut(s)	207, 417, 504, 512
Bse118I	RCCGGY	1 cut(s)	472
Bse1I	ACTGG	1 cut(s)	342
BseCI	ATCGAT	1 cut(s)	346
BseDI	CCNNGG	4 cut(s)	207, 417, 504, 512
BseGI	GGATG	1 cut(s)	313
BseMII	CTCAG	2 cut(s)	143, 469
BseNI	ACTGG	1 cut(s)	342
BseXI	GCAGC	4 cut(s)	259, 274, 277, 397
BsgI	GTGCAG	2 cut(s)	266, 396
BshFI	GGCC	4 cut(s)	31, 341, 422, 476
BshVI	ATCGAT	1 cut(s)	346
BsiHKAI	GWGCWC	1 cut(s)	456
BsiSI	CCGG	1 cut(s)	473
BsmAI	GTCTC	1 cut(s)	54
BsmBI	CGTCTC	1 cut(s)	54
BsnI	GGCC	4 cut(s)	31, 341, 422, 476
Bsp1286I	GDGCHC	1 cut(s)	456
Bsp143I	GATC	3 cut(s)	355, 508, 521
Bsp19I	CCATGG	1 cut(s)	417
BspACI	CCGC	1 cut(s)	275
BspANI	GGCC	4 cut(s)	31, 341, 422, 476
BspCNI	CTCAG	2 cut(s)	144, 468
BspDI	ATCGAT	1 cut(s)	346
BspLI	GGNNCC	2 cut(s)	477, 510
BspPI	GGATC	3 cut(s)	503, 516, 516
BsrFI	RCCGGY	1 cut(s)	472
BsrI	ACTGG	1 cut(s)	342
BssAI	RCCGGY	1 cut(s)	472
BssECI	CCNNGG	4 cut(s)	207, 417, 504, 512
BssMI	GATC	3 cut(s)	355, 508, 521
BssNAI	GTATAC	1 cut(s)	395
BssNI	GRCGYC	1 cut(s)	226
BssSI	CACGAG	1 cut(s)	182
BssT1I	CCWWGG	4 cut(s)	207, 417, 504, 512
Bst1107I	GTATAC	1 cut(s)	395
Bst2BI	CACGAG	1 cut(s)	182
Bst4CI	ACNGT	1 cut(s)	202
BstACI	GRCGYC	1 cut(s)	226
BstBAI	YACGTR	1 cut(s)	392
BstC8I	GCNNGC	3 cut(s)	33, 285, 536
BstDEI	CTNAG	3 cut(s)	105, 152, 455
BstDSI	CCRYGG	1 cut(s)	417
BstF5I	GGATG	1 cut(s)	313
BstHHI	GCGC	1 cut(s)	189
BstKTI	GATC	3 cut(s)	358, 511, 524
BstMAI	GTCTC	1 cut(s)	54
BstMBI	GATC	3 cut(s)	355, 508, 521
BstMWI	GCNNNNNNNGC	3 cut(s)	284, 419, 535
BstV1I	GCAGC	4 cut(s)	259, 274, 277, 397
BstV2I	GAAGAC	1 cut(s)	64
BstX2I	RGATCY	2 cut(s)	508, 521
BstYI	RGATCY	2 cut(s)	508, 521
BstZ17I	GTATAC	1 cut(s)	395
Bsu15I	ATCGAT	1 cut(s)	346
BsuRI	GGCC	4 cut(s)	31, 341, 422, 476
BsuTUI	ATCGAT	1 cut(s)	346
BtgI	CCRYGG	1 cut(s)	417
BtgZI	GCGATG	1 cut(s)	122
BtsCI	GGATG	1 cut(s)	313
Cac8I	GCNNGC	3 cut(s)	33, 285, 536
CfoI	GCGC	1 cut(s)	189
Cfr10I	RCCGGY	1 cut(s)	472
Cfr13I	GGNCC	1 cut(s)	475
ClaI	ATCGAT	1 cut(s)	346
CviAII	CATG	1 cut(s)	418
DdeI	CTNAG	3 cut(s)	105, 152, 455
DpnI	GATC	3 cut(s)	357, 510, 523
DpnII	GATC	3 cut(s)	355, 508, 521
DraIII	CACNNNGTG	1 cut(s)	272
DrdI	GACNNNNNNGTC	1 cut(s)	163
DseDI	GACNNNNNNGTC	1 cut(s)	163
Ecl136II	GAGCTC	1 cut(s)	454
Eco130I	CCWWGG	4 cut(s)	207, 417, 504, 512
Eco147I	AGGCCT	1 cut(s)	31
Eco24I	GRGCYC	1 cut(s)	456
Eco32I	GATATC	1 cut(s)	6
Eco53kI	GAGCTC	1 cut(s)	454
EcoICRI	GAGCTC	1 cut(s)	454
EcoRV	GATATC	1 cut(s)	6
EcoT14I	CCWWGG	4 cut(s)	207, 417, 504, 512
EcoT38I	GRGCYC	1 cut(s)	456
ErhI	CCWWGG	4 cut(s)	207, 417, 504, 512
Esp3I	CGTCTC	1 cut(s)	54
FaeI	CATG	1 cut(s)	421
FaiI	YATR	6 cut(s)	143, 149, 372, 395, 419, 426
FatI	CATG	1 cut(s)	417
FblI	GTMKAC	1 cut(s)	394
Fnu4HI	GCNGC	5 cut(s)	248, 276, 288, 291, 411
FokI	GGATG	1 cut(s)	320
FriOI	GRGCYC	1 cut(s)	456
Fsp4HI	GCNGC	5 cut(s)	248, 276, 288, 291, 411
GlaI	GCGC	1 cut(s)	188
GluI	GCNGC	5 cut(s)	248, 276, 288, 291, 411
HaeIII	GGCC	4 cut(s)	31, 341, 422, 476
HapII	CCGG	1 cut(s)	473
HhaI	GCGC	1 cut(s)	189
Hin1I	GRCGYC	1 cut(s)	226
Hin1II	CATG	1 cut(s)	421
Hin6I	GCGC	1 cut(s)	187
HinP1I	GCGC	1 cut(s)	187
HindIII	AAGCTT	1 cut(s)	527
HinfI	GANTC	1 cut(s)	461
HpaII	CCGG	1 cut(s)	473
HphI	GGTGA	2 cut(s)	187, 416
Hpy166II	GTNNAC	2 cut(s)	266, 395
Hpy188I	TCNGA	4 cut(s)	84, 387, 458, 577
Hpy188III	TCNNGA	1 cut(s)	94
Hpy8I	GTNNAC	2 cut(s)	266, 395
Hpy99I	CGWCG	2 cut(s)	46, 228
HpyCH4III	ACNGT	1 cut(s)	202
HpyCH4IV	ACGT	2 cut(s)	226, 391
HpyCH4V	TGCA	5 cut(s)	35, 247, 413, 534, 545
HpyF10VI	GCNNNNNNNGC	3 cut(s)	284, 419, 535
HpyF3I	CTNAG	3 cut(s)	105, 152, 455
HpySE526I	ACGT	2 cut(s)	226, 391
Hsp92I	GRCGYC	1 cut(s)	226
Hsp92II	CATG	1 cut(s)	421
HspAI	GCGC	1 cut(s)	187
Kzo9I	GATC	3 cut(s)	355, 508, 521
LpnPI	CCDG	4 cut(s)	45, 215, 323, 486
Lsp1109I	GCAGC	4 cut(s)	259, 274, 277, 397
LweI	GCATC	1 cut(s)	397
MaeII	ACGT	2 cut(s)	226, 391
MalI	GATC	3 cut(s)	357, 510, 523
MboI	GATC	3 cut(s)	355, 508, 521
MboII	GAAGA	3 cut(s)	64, 67, 569
MflI	RGATCY	2 cut(s)	508, 521
MhlI	GDGCHC	1 cut(s)	456
MluCI	AATT	2 cut(s)	36, 315
MnlI	CCTC	4 cut(s)	147, 211, 273, 489
MseI	TTAA	1 cut(s)	110
MslI	CAYNNNNRTG	2 cut(s)	66, 146
MspI	CCGG	1 cut(s)	473
MwoI	GCNNNNNNNGC	3 cut(s)	284, 419, 535
NcoI	CCATGG	1 cut(s)	417
NdeII	GATC	3 cut(s)	355, 508, 521
NlaIII	CATG	1 cut(s)	421
NlaIV	GGNNCC	2 cut(s)	477, 510
PceI	AGGCCT	1 cut(s)	31
PfeI	GAWTC	1 cut(s)	461
PkrI	GCNGC	5 cut(s)	249, 277, 289, 292, 412
Ppu21I	YACGTR	1 cut(s)	392
Psp124BI	GAGCTC	1 cut(s)	456
PspN4I	GGNNCC	2 cut(s)	477, 510
PspPI	GGNCC	1 cut(s)	475
PsuI	RGATCY	2 cut(s)	508, 521
RseI	CAYNNNNRTG	2 cut(s)	66, 146
SacI	GAGCTC	1 cut(s)	456
SaqAI	TTAA	1 cut(s)	110
SatI	GCNGC	5 cut(s)	248, 276, 288, 291, 411
Sau3AI	GATC	3 cut(s)	355, 508, 521
Sau96I	GGNCC	1 cut(s)	475
SduI	GDGCHC	1 cut(s)	456
SfaNI	GCATC	1 cut(s)	397
SmiMI	CAYNNNNRTG	2 cut(s)	66, 146
SmlI	CTYRAG	1 cut(s)	92
SmoI	CTYRAG	1 cut(s)	92
Sse9I	AATT	2 cut(s)	36, 315
SseBI	AGGCCT	1 cut(s)	31
SsiI	CCGC	1 cut(s)	275
SstI	GAGCTC	1 cut(s)	456
StuI	AGGCCT	1 cut(s)	31
StyI	CCWWGG	4 cut(s)	207, 417, 504, 512
TaaI	ACNGT	1 cut(s)	202
TaiI	ACGT	2 cut(s)	229, 394
TaqI	TCGA	3 cut(s)	223, 346, 358
TasI	AATT	2 cut(s)	36, 315
TauI	GCSGC	1 cut(s)	278
TfiI	GAWTC	1 cut(s)	461
Tru1I	TTAA	1 cut(s)	110
Tru9I	TTAA	1 cut(s)	110
TseI	GCWGC	4 cut(s)	247, 287, 290, 410
TspDTI	ATGAA	1 cut(s)	424
TspGWI	ACGGA	1 cut(s)	56
XmiI	GTMKAC	1 cut(s)	394
ZraI	GACGTC	1 cut(s)	227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.