Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0008477

Physical Location & Seq

Genomic Coordinates Forward (+)

3236742 .. 3240895

Gene Structure 4154 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g04310.8

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGGAGGGGTTGGGCTTAGCCCAAAAAGGAACTATTAATCAAAGCTTTATACTTGGGCCTCTGAAAACTCCATTGGGAATATTTGGGCCAAGGGCAACTACGATAAGCCATATATCTCTCGAATTGAGCTCTTATCCCAAATCTGCAACCTTGATCCGCTCAGTCCCGAATCTTAACCCAAAGCCCAAAGCCCAAAGCCCGAAACTAGGGCTTTTAGTTTTTTCAATTTTCCAAGCTCTCCCCTGGAGGAGGATGACGAAGTTCAGGAAGCTAAACCGACCCACGGGTCACCGCATGTCCATGCTCAGGACGATGGTGTCGCAGTTGGTGAAGCACGAGCGCATTGAGACTACTGTTTCCAAGGCCAAGGAGATCCGTCGCGAGGCTGATAAAATGGTGCAGCTTGGAAAAGATGGCTCCTTGTGTGCCGCAAGGCGTGCTGCTGCTTTCGTGCGTGGGGATAATGTACTTCACAAGCTATTTACAGAAATGGCTTATCGATACAAAGATCGAGTAGGTGGATACACAAGACTACTTCGGACTCGTATACGAGTTGGTGATGCTGCACCTATGGCCTATATTGAGTTCATTGACAGAGAAAATGAGCTCAGACAATCAAAACCACCAGCCCCCCAACCACCTCAGAGAGTTCCTTTGGATCTTTGTGCGATCGATCCAAGCTTTGCAAGCAGTTTGCACCTCCTAAAGAAGATAAGAGCTCTGAGATTTGATTTGCTATCTTATGATTCCGTCACGAGAAAGTCTTTGATTTCTCGTGGTTCTCCTAATAGGAAGTCTCTGATTTCTTGTGATTCATATATGTCAGACTCGATATGCATTTGGACATGGAGTCGAGAAAAGTCGATGGATGCGCTGAGCACAGCACGGCCACAGCCATTTAATAATGAAAATAGTTTGAAAATTTTAAGTTTTAACGATAAGGACAAAATAAAGGATAAAGTGAATCGTATCAGGATTGACTTTTTAGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0015934 GO:0022625 GO:0022626 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L17

Protein Analysis

331

Amino Acids

37.46

Weight (kDa)

10.39

Isoelectric Point (pI)

45.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008477)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09770 AT5G64650
fragaria_vesca	FvH4_3g14560 FvH4_3g14560 FvH4_3g14560 FvH4_3g14560 FvH4_3g14560
malus_domestica	MD01G1012100.v1.1 MD15G1337900.v1.1
prunus_persica	Prupe.6G158000_v2.0.a1 Prupe.6G158000_v2.0.a1
pyrus_communis	pycom01g04310 pycom15g28860
rosa_chinensis	RchiOBHm_Chr5g0024011
rosa_laevigata	RLG00000032754
rosa_multiflora	Rmu_sc0005837.1_g000012 Rmu_sc0011761.1_g000001
rosa_roxburghii	Rroxscaffold_1G00055230
rosa_rugosa	Rorug05G0080700
rosa_samantha	Rh5BG167900 Rh5CG183400 Rh5DG170100
rosa_wichuraiana	Rw5G015490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	285, 316
AccBSI	CCGCTC	1 cut(s)	159
AccI	GTMKAC	1 cut(s)	547
AccII	CGCG	1 cut(s)	381
AciI	CCGC	3 cut(s)	157, 292, 429
AclWI	GGATC	4 cut(s)	148, 367, 666, 668
AcoI	YGGCCR	1 cut(s)	887
AcsI	RAATTY	1 cut(s)	921
AfaI	GTAC	1 cut(s)	468
AfiI	CCNNNNNNNGG	5 cut(s)	206, 249, 283, 306, 382
AgsI	TTSAA	2 cut(s)	225, 919
AhdI	GACNNNNNGTC	1 cut(s)	849
AjnI	CCWGG	1 cut(s)	242
AjuI	GAANNNNNNNTTGG	2 cut(s)	56, 88
AluBI	AGCT	9 cut(s)	45, 129, 236, 271, 403, 478, 607, 681, 719
AluI	AGCT	9 cut(s)	45, 129, 236, 271, 403, 478, 607, 681, 719
Alw21I	GWGCWC	4 cut(s)	131, 609, 721, 881
Alw26I	GTCTC	2 cut(s)	341, 801
AlwI	GGATC	4 cut(s)	148, 367, 666, 668
AoxI	GGCC	5 cut(s)	56, 86, 363, 573, 887
ApeKI	GCWGC	4 cut(s)	400, 440, 443, 563
ApoI	RAATTY	1 cut(s)	921
AseI	ATTAAT	1 cut(s)	36
AspLEI	GCGC	2 cut(s)	342, 874
AspS9I	GGNCC	2 cut(s)	56, 86
AsuHPI	GGTGA	3 cut(s)	281, 340, 569
BanII	GRGCYC	3 cut(s)	131, 609, 721
BauI	CACGAG	3 cut(s)	335, 754, 774
Bbv12I	GWGCWC	4 cut(s)	131, 609, 721, 881
BbvI	GCAGC	4 cut(s)	412, 427, 430, 550
BccI	CCATC	3 cut(s)	307, 407, 859
BceAI	ACGGC	1 cut(s)	902
BciT130I	CCWGG	1 cut(s)	244
BciVI	GTATCC	1 cut(s)	515
BcoDI	GTCTC	2 cut(s)	341, 801
BfaI	CTAG	1 cut(s)	206
BfuI	GTATCC	1 cut(s)	515
BisI	GCNGC	5 cut(s)	401, 429, 441, 444, 564
BlpI	GCTNAGC	2 cut(s)	16, 875
BlsI	GCNGC	5 cut(s)	402, 430, 442, 445, 565
Bme1390I	CCNGG	1 cut(s)	244
BmeRI	GACNNNNNGTC	1 cut(s)	849
BmgT120I	GGNCC	2 cut(s)	56, 86
BmiI	GGNNCC	1 cut(s)	418
BmrFI	CCNGG	1 cut(s)	244
BmsI	GCATC	2 cut(s)	550, 859
BpmI	CTGGAG	1 cut(s)	265
Bpu10I	CCTNAGC	1 cut(s)	305
Bpu1102I	GCTNAGC	2 cut(s)	16, 875
Bsa29I	ATCGAT	2 cut(s)	499, 672
BsaJI	CCNNGG	5 cut(s)	89, 242, 282, 360, 366
Bsc4I	CCNNNNNNNGG	5 cut(s)	206, 249, 283, 306, 382
BseBI	CCWGG	1 cut(s)	244
BseCI	ATCGAT	2 cut(s)	499, 672
BseDI	CCNNGG	5 cut(s)	89, 242, 282, 360, 366
BseGI	GGATG	2 cut(s)	258, 874
BseLI	CCNNNNNNNGG	5 cut(s)	206, 249, 283, 306, 382
BseMII	CTCAG	6 cut(s)	174, 319, 622, 656, 713, 866
BseRI	GAGGAG	1 cut(s)	262
BseXI	GCAGC	4 cut(s)	412, 427, 430, 550
BsgI	GTGCAG	2 cut(s)	419, 549
Bsh1236I	CGCG	1 cut(s)	381
Bsh1285I	CGRYCG	1 cut(s)	672
BshFI	GGCC	5 cut(s)	58, 88, 365, 575, 889
BshVI	ATCGAT	2 cut(s)	499, 672
BsiEI	CGRYCG	1 cut(s)	672
BsiHKAI	GWGCWC	4 cut(s)	131, 609, 721, 881
BslFI	GGGAC	1 cut(s)	149
BslI	CCNNNNNNNGG	5 cut(s)	206, 249, 283, 306, 382
BsmAI	GTCTC	2 cut(s)	341, 801
BsmFI	GGGAC	1 cut(s)	149
BsnI	GGCC	5 cut(s)	58, 88, 365, 575, 889
Bsp1286I	GDGCHC	4 cut(s)	131, 609, 721, 881
Bsp143I	GATC	6 cut(s)	153, 372, 508, 658, 669, 673
Bsp1720I	GCTNAGC	2 cut(s)	16, 875
Bsp68I	TCGCGA	1 cut(s)	381
BspACI	CCGC	3 cut(s)	157, 292, 429
BspANI	GGCC	5 cut(s)	58, 88, 365, 575, 889
BspCNI	CTCAG	6 cut(s)	173, 318, 621, 655, 714, 867
BspDI	ATCGAT	2 cut(s)	499, 672
BspFNI	CGCG	1 cut(s)	381
BspLI	GGNNCC	1 cut(s)	418
BspPI	GGATC	4 cut(s)	148, 367, 666, 668
BsrBI	CCGCTC	1 cut(s)	159
BssECI	CCNNGG	5 cut(s)	89, 242, 282, 360, 366
BssMI	GATC	6 cut(s)	153, 372, 508, 658, 669, 673
BssNAI	GTATAC	1 cut(s)	548
BssSI	CACGAG	3 cut(s)	335, 754, 774
BssT1I	CCWWGG	3 cut(s)	89, 360, 366
Bst1107I	GTATAC	1 cut(s)	548
Bst2BI	CACGAG	3 cut(s)	335, 754, 774
Bst2UI	CCWGG	1 cut(s)	244
Bst4CI	ACNGT	1 cut(s)	355
BstAPI	GCANNNNNTGC	1 cut(s)	437
BstC8I	GCNNGC	2 cut(s)	438, 688
BstDEI	CTNAG	7 cut(s)	16, 160, 305, 608, 642, 722, 875
BstDSI	CCRYGG	1 cut(s)	282
BstEII	GGTNACC	1 cut(s)	287
BstENI	CCTNNNNNAGG	1 cut(s)	247
BstF5I	GGATG	2 cut(s)	258, 874
BstFNI	CGCG	1 cut(s)	381
BstHHI	GCGC	2 cut(s)	342, 874
BstKTI	GATC	6 cut(s)	156, 375, 511, 661, 672, 676
BstMAI	GTCTC	2 cut(s)	341, 801
BstMBI	GATC	6 cut(s)	153, 372, 508, 658, 669, 673
BstMCI	CGRYCG	1 cut(s)	672
BstMWI	GCNNNNNNNGC	3 cut(s)	437, 572, 687
BstNI	CCWGG	1 cut(s)	244
BstNSI	RCATGY	1 cut(s)	298
BstPI	GGTNACC	1 cut(s)	287
BstSCI	CCNGG	1 cut(s)	242
BstUI	CGCG	1 cut(s)	381
BstV1I	GCAGC	4 cut(s)	412, 427, 430, 550
BstX2I	RGATCY	2 cut(s)	372, 658
BstYI	RGATCY	2 cut(s)	372, 658
BstZ17I	GTATAC	1 cut(s)	548
Bsu15I	ATCGAT	2 cut(s)	499, 672
BsuI	GTATCC	1 cut(s)	515
BsuRI	GGCC	5 cut(s)	58, 88, 365, 575, 889
BsuTUI	ATCGAT	2 cut(s)	499, 672
BtgI	CCRYGG	1 cut(s)	282
BtsCI	GGATG	2 cut(s)	258, 874
BtuMI	TCGCGA	1 cut(s)	381
Cac8I	GCNNGC	2 cut(s)	438, 688
CfoI	GCGC	2 cut(s)	342, 874
Cfr13I	GGNCC	2 cut(s)	56, 86
ClaI	ATCGAT	2 cut(s)	499, 672
Csp6I	GTAC	1 cut(s)	467
CviAII	CATG	3 cut(s)	295, 301, 846
CviQI	GTAC	1 cut(s)	467
DdeI	CTNAG	7 cut(s)	16, 160, 305, 608, 642, 722, 875
DpnI	GATC	6 cut(s)	155, 374, 510, 660, 671, 675
DpnII	GATC	6 cut(s)	153, 372, 508, 658, 669, 673
DrdI	GACNNNNNNGTC	2 cut(s)	285, 316
DriI	GACNNNNNGTC	1 cut(s)	849
DseDI	GACNNNNNNGTC	2 cut(s)	285, 316
EaeI	YGGCCR	1 cut(s)	887
Eam1105I	GACNNNNNGTC	1 cut(s)	849
Ecl136II	GAGCTC	3 cut(s)	129, 607, 719
Eco130I	CCWWGG	3 cut(s)	89, 360, 366
Eco24I	GRGCYC	3 cut(s)	131, 609, 721
Eco53kI	GAGCTC	3 cut(s)	129, 607, 719
Eco91I	GGTNACC	1 cut(s)	287
EcoICRI	GAGCTC	3 cut(s)	129, 607, 719
EcoNI	CCTNNNNNAGG	1 cut(s)	247
EcoO65I	GGTNACC	1 cut(s)	287
EcoRII	CCWGG	1 cut(s)	242
EcoT14I	CCWWGG	3 cut(s)	89, 360, 366
EcoT22I	ATGCAT	1 cut(s)	839
EcoT38I	GRGCYC	3 cut(s)	131, 609, 721
ErhI	CCWWGG	3 cut(s)	89, 360, 366
FaeI	CATG	3 cut(s)	298, 304, 849
FaqI	GGGAC	1 cut(s)	149
FatI	CATG	3 cut(s)	294, 300, 845
FblI	GTMKAC	1 cut(s)	547
Fnu4HI	GCNGC	5 cut(s)	401, 429, 441, 444, 564
FokI	GGATG	2 cut(s)	265, 881
FriOI	GRGCYC	3 cut(s)	131, 609, 721
Fsp4HI	GCNGC	5 cut(s)	401, 429, 441, 444, 564
FspBI	CTAG	1 cut(s)	206
GlaI	GCGC	2 cut(s)	341, 873
GluI	GCNGC	5 cut(s)	401, 429, 441, 444, 564
GsuI	CTGGAG	1 cut(s)	265
HaeIII	GGCC	5 cut(s)	58, 88, 365, 575, 889
HhaI	GCGC	2 cut(s)	342, 874
Hin1II	CATG	3 cut(s)	298, 304, 849
Hin6I	GCGC	2 cut(s)	340, 872
HinP1I	GCGC	2 cut(s)	340, 872
HindIII	AAGCTT	2 cut(s)	43, 679
HinfI	GANTC	7 cut(s)	169, 541, 746, 812, 827, 850, 964
HphI	GGTGA	3 cut(s)	281, 340, 569
Hpy166II	GTNNAC	1 cut(s)	548
Hpy188I	TCNGA	7 cut(s)	63, 540, 611, 645, 723, 801, 826
Hpy188III	TCNNGA	8 cut(s)	119, 166, 265, 307, 380, 754, 854, 973
Hpy8I	GTNNAC	1 cut(s)	548
Hpy99I	CGWCG	1 cut(s)	381
HpyCH4III	ACNGT	1 cut(s)	355
HpyCH4V	TGCA	6 cut(s)	146, 400, 566, 686, 697, 837
HpyF10VI	GCNNNNNNNGC	3 cut(s)	437, 572, 687
HpyF3I	CTNAG	7 cut(s)	16, 160, 305, 608, 642, 722, 875
Hsp92II	CATG	3 cut(s)	298, 304, 849
HspAI	GCGC	2 cut(s)	340, 872
Kzo9I	GATC	6 cut(s)	153, 372, 508, 658, 669, 673
LmnI	GCTCC	1 cut(s)	422
LpnPI	CCDG	6 cut(s)	229, 250, 256, 292, 639, 958
Lsp1109I	GCAGC	4 cut(s)	412, 427, 430, 550
LweI	GCATC	2 cut(s)	550, 859
MaeI	CTAG	1 cut(s)	206
MaeIII	GTNAC	2 cut(s)	287, 751
MalI	GATC	6 cut(s)	155, 374, 510, 660, 671, 675
MbiI	CCGCTC	1 cut(s)	159
MboI	GATC	6 cut(s)	153, 372, 508, 658, 669, 673
MboII	GAAGA	1 cut(s)	721
MflI	RGATCY	2 cut(s)	372, 658
MhlI	GDGCHC	4 cut(s)	131, 609, 721, 881
MluCI	AATT	3 cut(s)	122, 225, 921
MlyI	GAGTC	3 cut(s)	535, 821, 859
MnlI	CCTC	6 cut(s)	69, 240, 243, 376, 651, 710
Mph1103I	ATGCAT	1 cut(s)	839
MseI	TTAA	5 cut(s)	36, 174, 900, 926, 933
MslI	CAYNNNNRTG	1 cut(s)	299
MspR9I	CCNGG	1 cut(s)	244
MvaI	CCWGG	1 cut(s)	244
MvnI	CGCG	1 cut(s)	381
MwoI	GCNNNNNNNGC	3 cut(s)	437, 572, 687
NdeII	GATC	6 cut(s)	153, 372, 508, 658, 669, 673
NlaIII	CATG	3 cut(s)	298, 304, 849
NlaIV	GGNNCC	1 cut(s)	418
NmuCI	GTSAC	2 cut(s)	287, 751
NruI	TCGCGA	1 cut(s)	381
NsiI	ATGCAT	1 cut(s)	839
NspI	RCATGY	1 cut(s)	298
PfeI	GAWTC	4 cut(s)	169, 746, 812, 964
PkrI	GCNGC	5 cut(s)	402, 430, 442, 445, 565
Ple19I	CGATCG	1 cut(s)	672
PleI	GAGTC	3 cut(s)	535, 821, 858
PpsI	GAGTC	3 cut(s)	535, 821, 858
PshBI	ATTAAT	1 cut(s)	36
Psp124BI	GAGCTC	3 cut(s)	131, 609, 721
Psp6I	CCWGG	1 cut(s)	242
PspEI	GGTNACC	1 cut(s)	287
PspGI	CCWGG	1 cut(s)	242
PspN4I	GGNNCC	1 cut(s)	418
PspPI	GGNCC	2 cut(s)	56, 86
PsuI	RGATCY	2 cut(s)	372, 658
PvuI	CGATCG	1 cut(s)	672
RruI	TCGCGA	1 cut(s)	381
RsaI	GTAC	1 cut(s)	468
RsaNI	GTAC	1 cut(s)	467
RseI	CAYNNNNRTG	1 cut(s)	299
SacI	GAGCTC	3 cut(s)	131, 609, 721
SaqAI	TTAA	5 cut(s)	36, 174, 900, 926, 933
SatI	GCNGC	5 cut(s)	401, 429, 441, 444, 564
Sau3AI	GATC	6 cut(s)	153, 372, 508, 658, 669, 673
Sau96I	GGNCC	2 cut(s)	56, 86
SchI	GAGTC	3 cut(s)	535, 821, 859
ScrFI	CCNGG	1 cut(s)	244
SduI	GDGCHC	4 cut(s)	131, 609, 721, 881
SfaNI	GCATC	2 cut(s)	550, 859
SmiMI	CAYNNNNRTG	1 cut(s)	299
Sse9I	AATT	3 cut(s)	122, 225, 921
SsiI	CCGC	3 cut(s)	157, 292, 429
SspI	AATATT	1 cut(s)	81
SspMI	CTAG	1 cut(s)	206
SstI	GAGCTC	3 cut(s)	131, 609, 721
StyD4I	CCNGG	1 cut(s)	242
StyI	CCWWGG	3 cut(s)	89, 360, 366
TaaI	ACNGT	1 cut(s)	355
TaqI	TCGA	7 cut(s)	120, 499, 511, 672, 830, 853, 863
TasI	AATT	3 cut(s)	122, 225, 921
TatI	WGTACW	1 cut(s)	466
TauI	GCSGC	1 cut(s)	431
TfiI	GAWTC	4 cut(s)	169, 746, 812, 964
Tru1I	TTAA	5 cut(s)	36, 174, 900, 926, 933
Tru9I	TTAA	5 cut(s)	36, 174, 900, 926, 933
TseFI	GTSAC	2 cut(s)	287, 751
TseI	GCWGC	4 cut(s)	400, 440, 443, 563
Tsp45I	GTSAC	2 cut(s)	287, 751
TspDTI	ATGAA	3 cut(s)	577, 804, 921
TspGWI	ACGGA	2 cut(s)	365, 739
VspI	ATTAAT	1 cut(s)	36
XagI	CCTNNNNNAGG	1 cut(s)	247
XapI	RAATTY	1 cut(s)	921
XceI	RCATGY	1 cut(s)	298
XmiI	GTMKAC	1 cut(s)	547
XspI	CTAG	1 cut(s)	206
Zsp2I	ATGCAT	1 cut(s)	839

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.