Rh5BG167900

Belongs to the bacterial ribosomal protein bL17 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0008477
Physical Location & Seq
Reverse (-)
17658995 .. 17660614
1620 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG167900.1

Sequence Viewer

Length: 486 bp
ATGACTAAGTTGAGGAAGCTGAACCGAACCACAGCTCATCGCATATCCATGCTGAGGACGATGGTGTCGCAGTTGGTGAAGCACGAGCGCATTGAAACCACCGTTGCCAAGGCAAAAGAGGTTCGACGTCAGGCTGATAGAATGGTGCAGCTTGGAAAAGATGGTTCACTCTGTGCGGCGAGGCGTGCTGCTGCTTTTGTGCGTGGGGATGATGTAATTCACAAGCTATTTACCGAACTGGCCTATCGATACAAAGATCGAGTAGGTGGATATACAAGACTGCTTCGGACACGTATACGAGTTGGTGATGCTGCACCCATGGCCTATATTGAGTTCATTGACAGAGAAAATGAGCTCAGAGAATCAAAACCACCGGCCCCTCAACCACCACCACCAAGAGTTCCCTTGGATCCTTGGGCAAGATCCAAGCTTTGCAAGCAGTTTCCACCCCCTAAAGAAGATAAAAACAAGAGCTCCGAGATTTGA

Protein Analysis

161

Amino Acids

18.55

Weight (kDa)

10.37

Isoelectric Point (pI)

48.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L17 PF01196 17 - 113 2.9e-35 Ribosomal protein L17
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 64
AatII GACGTC 1 cut(s) 130
AccI GTMKAC 1 cut(s) 295
AciI CCGC 1 cut(s) 176
AclWI GGATC 3 cut(s) 404, 417, 417
AcyI GRCGYC 1 cut(s) 127
AdeI CACNNNGTG 1 cut(s) 173
AfiI CCNNNNNNNGG 1 cut(s) 54
AflIII ACRYGT 1 cut(s) 290
AgsI TTSAA 1 cut(s) 95
AluBI AGCT 7 cut(s) 19, 35, 151, 226, 355, 430, 474
AluI AGCT 7 cut(s) 19, 35, 151, 226, 355, 430, 474
Alw21I GWGCWC 2 cut(s) 357, 476
AlwI GGATC 3 cut(s) 404, 417, 417
AoxI GGCC 3 cut(s) 240, 321, 375
ApeKI GCWGC 4 cut(s) 148, 188, 191, 311
AspLEI GCGC 1 cut(s) 90
AspS9I GGNCC 1 cut(s) 376
AsuHPI GGTGA 2 cut(s) 88, 317
BamHI GGATCC 1 cut(s) 409
BanII GRGCYC 2 cut(s) 357, 476
BauI CACGAG 1 cut(s) 83
Bbv12I GWGCWC 2 cut(s) 357, 476
BbvCI CCTCAGC 1 cut(s) 53
BbvI GCAGC 4 cut(s) 160, 175, 178, 298
BccI CCATC 2 cut(s) 55, 155
BisI GCNGC 5 cut(s) 149, 177, 189, 192, 312
BlsI GCNGC 5 cut(s) 150, 178, 190, 193, 313
BmgT120I GGNCC 1 cut(s) 376
BmiI GGNNCC 2 cut(s) 378, 411
BmsI GCATC 1 cut(s) 298
Bpu10I CCTNAGC 1 cut(s) 53
Bsa29I ATCGAT 1 cut(s) 247
BsaAI YACGTR 1 cut(s) 293
BsaHI GRCGYC 1 cut(s) 127
BsaJI CCNNGG 4 cut(s) 108, 318, 405, 413
BsaXI ACNNNNNCTCC 1 cut(s) 458
Bsc4I CCNNNNNNNGG 1 cut(s) 54
Bse118I RCCGGY 1 cut(s) 373
Bse1I ACTGG 1 cut(s) 243
BseCI ATCGAT 1 cut(s) 247
BseDI CCNNGG 4 cut(s) 108, 318, 405, 413
BseGI GGATG 1 cut(s) 214
BseLI CCNNNNNNNGG 1 cut(s) 54
BseMII CTCAG 2 cut(s) 44, 370
BseNI ACTGG 1 cut(s) 243
BseXI GCAGC 4 cut(s) 160, 175, 178, 298
BsgI GTGCAG 2 cut(s) 167, 297
BshFI GGCC 3 cut(s) 242, 323, 377
BshVI ATCGAT 1 cut(s) 247
BsiHKAI GWGCWC 2 cut(s) 357, 476
BsiSI CCGG 1 cut(s) 374
BslI CCNNNNNNNGG 1 cut(s) 54
BsnI GGCC 3 cut(s) 242, 323, 377
Bsp1286I GDGCHC 2 cut(s) 357, 476
Bsp143I GATC 3 cut(s) 256, 409, 422
Bsp19I CCATGG 1 cut(s) 318
BspACI CCGC 1 cut(s) 176
BspANI GGCC 3 cut(s) 242, 323, 377
BspCNI CTCAG 2 cut(s) 45, 369
BspDI ATCGAT 1 cut(s) 247
BspLI GGNNCC 2 cut(s) 378, 411
BspPI GGATC 3 cut(s) 404, 417, 417
BsrFI RCCGGY 1 cut(s) 373
BsrI ACTGG 1 cut(s) 243
BssAI RCCGGY 1 cut(s) 373
BssECI CCNNGG 4 cut(s) 108, 318, 405, 413
BssMI GATC 3 cut(s) 256, 409, 422
BssNAI GTATAC 1 cut(s) 296
BssNI GRCGYC 1 cut(s) 127
BssSI CACGAG 1 cut(s) 83
BssT1I CCWWGG 4 cut(s) 108, 318, 405, 413
Bst1107I GTATAC 1 cut(s) 296
Bst2BI CACGAG 1 cut(s) 83
Bst4CI ACNGT 1 cut(s) 103
BstACI GRCGYC 1 cut(s) 127
BstBAI YACGTR 1 cut(s) 293
BstC8I GCNNGC 2 cut(s) 186, 437
BstDEI CTNAG 3 cut(s) 6, 53, 356
BstDSI CCRYGG 1 cut(s) 318
BstF5I GGATG 1 cut(s) 214
BstHHI GCGC 1 cut(s) 90
BstKTI GATC 3 cut(s) 259, 412, 425
BstMBI GATC 3 cut(s) 256, 409, 422
BstMWI GCNNNNNNNGC 3 cut(s) 185, 320, 436
BstV1I GCAGC 4 cut(s) 160, 175, 178, 298
BstX2I RGATCY 2 cut(s) 409, 422
BstYI RGATCY 2 cut(s) 409, 422
BstZ17I GTATAC 1 cut(s) 296
Bsu15I ATCGAT 1 cut(s) 247
BsuRI GGCC 3 cut(s) 242, 323, 377
BsuTUI ATCGAT 1 cut(s) 247
BtgI CCRYGG 1 cut(s) 318
BtgZI GCGATG 1 cut(s) 23
BtsCI GGATG 1 cut(s) 214
Cac8I GCNNGC 2 cut(s) 186, 437
CfoI GCGC 1 cut(s) 90
Cfr10I RCCGGY 1 cut(s) 373
Cfr13I GGNCC 1 cut(s) 376
ClaI ATCGAT 1 cut(s) 247
CviAII CATG 2 cut(s) 49, 319
DdeI CTNAG 3 cut(s) 6, 53, 356
DpnI GATC 3 cut(s) 258, 411, 424
DpnII GATC 3 cut(s) 256, 409, 422
DraIII CACNNNGTG 1 cut(s) 173
DrdI GACNNNNNNGTC 1 cut(s) 64
DseDI GACNNNNNNGTC 1 cut(s) 64
Ecl136II GAGCTC 2 cut(s) 355, 474
Eco130I CCWWGG 4 cut(s) 108, 318, 405, 413
Eco24I GRGCYC 2 cut(s) 357, 476
Eco53kI GAGCTC 2 cut(s) 355, 474
EcoICRI GAGCTC 2 cut(s) 355, 474
EcoT14I CCWWGG 4 cut(s) 108, 318, 405, 413
EcoT38I GRGCYC 2 cut(s) 357, 476
ErhI CCWWGG 4 cut(s) 108, 318, 405, 413
FaeI CATG 2 cut(s) 52, 322
FaiI YATR 6 cut(s) 44, 50, 273, 296, 320, 327
FatI CATG 2 cut(s) 48, 318
FblI GTMKAC 1 cut(s) 295
Fnu4HI GCNGC 5 cut(s) 149, 177, 189, 192, 312
FokI GGATG 1 cut(s) 221
FriOI GRGCYC 2 cut(s) 357, 476
Fsp4HI GCNGC 5 cut(s) 149, 177, 189, 192, 312
GlaI GCGC 1 cut(s) 89
GluI GCNGC 5 cut(s) 149, 177, 189, 192, 312
HaeIII GGCC 3 cut(s) 242, 323, 377
HapII CCGG 1 cut(s) 374
HhaI GCGC 1 cut(s) 90
Hin1I GRCGYC 1 cut(s) 127
Hin1II CATG 2 cut(s) 52, 322
Hin6I GCGC 1 cut(s) 88
HinP1I GCGC 1 cut(s) 88
HindIII AAGCTT 1 cut(s) 428
HinfI GANTC 1 cut(s) 362
HpaII CCGG 1 cut(s) 374
HphI GGTGA 2 cut(s) 88, 317
Hpy166II GTNNAC 2 cut(s) 167, 296
Hpy188I TCNGA 3 cut(s) 288, 359, 478
Hpy8I GTNNAC 2 cut(s) 167, 296
Hpy99I CGWCG 1 cut(s) 129
HpyCH4III ACNGT 1 cut(s) 103
HpyCH4IV ACGT 2 cut(s) 127, 292
HpyCH4V TGCA 3 cut(s) 148, 314, 435
HpyF10VI GCNNNNNNNGC 3 cut(s) 185, 320, 436
HpyF3I CTNAG 3 cut(s) 6, 53, 356
HpySE526I ACGT 2 cut(s) 127, 292
Hsp92I GRCGYC 1 cut(s) 127
Hsp92II CATG 2 cut(s) 52, 322
HspAI GCGC 1 cut(s) 88
Kzo9I GATC 3 cut(s) 256, 409, 422
LmnI GCTCC 1 cut(s) 479
LpnPI CCDG 3 cut(s) 116, 224, 387
Lsp1109I GCAGC 4 cut(s) 160, 175, 178, 298
LweI GCATC 1 cut(s) 298
MaeII ACGT 2 cut(s) 127, 292
MalI GATC 3 cut(s) 258, 411, 424
MboI GATC 3 cut(s) 256, 409, 422
MboII GAAGA 1 cut(s) 470
MflI RGATCY 2 cut(s) 409, 422
MhlI GDGCHC 2 cut(s) 357, 476
MluCI AATT 1 cut(s) 216
MnlI CCTC 5 cut(s) 6, 48, 112, 174, 390
MslI CAYNNNNRTG 1 cut(s) 47
MspI CCGG 1 cut(s) 374
MwoI GCNNNNNNNGC 3 cut(s) 185, 320, 436
NcoI CCATGG 1 cut(s) 318
NdeII GATC 3 cut(s) 256, 409, 422
NlaIII CATG 2 cut(s) 52, 322
NlaIV GGNNCC 2 cut(s) 378, 411
PfeI GAWTC 1 cut(s) 362
PkrI GCNGC 5 cut(s) 150, 178, 190, 193, 313
Ppu21I YACGTR 1 cut(s) 293
Psp124BI GAGCTC 2 cut(s) 357, 476
PspN4I GGNNCC 2 cut(s) 378, 411
PspPI GGNCC 1 cut(s) 376
PsuI RGATCY 2 cut(s) 409, 422
RseI CAYNNNNRTG 1 cut(s) 47
SacI GAGCTC 2 cut(s) 357, 476
SatI GCNGC 5 cut(s) 149, 177, 189, 192, 312
Sau3AI GATC 3 cut(s) 256, 409, 422
Sau96I GGNCC 1 cut(s) 376
SduI GDGCHC 2 cut(s) 357, 476
SfaNI GCATC 1 cut(s) 298
SmiMI CAYNNNNRTG 1 cut(s) 47
Sse9I AATT 1 cut(s) 216
SsiI CCGC 1 cut(s) 176
SstI GAGCTC 2 cut(s) 357, 476
StyI CCWWGG 4 cut(s) 108, 318, 405, 413
TaaI ACNGT 1 cut(s) 103
TaiI ACGT 2 cut(s) 130, 295
TaqI TCGA 3 cut(s) 124, 247, 259
TasI AATT 1 cut(s) 216
TauI GCSGC 1 cut(s) 179
TfiI GAWTC 1 cut(s) 362
TseI GCWGC 4 cut(s) 148, 188, 191, 311
TspDTI ATGAA 1 cut(s) 325
XmiI GTMKAC 1 cut(s) 295
ZraI GACGTC 1 cut(s) 128
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.