Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0008477

Physical Location & Seq

Genomic Coordinates Forward (+)

25242689 .. 25245861

Gene Structure 3173 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g28860.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGACGAAGTTCAGGAAGCTAAACCGACCCACGGGTCACCGCATGTCCATGCTCAGGACGATGGTGTCGCAGTTGGTGAAACATGAGCGCATTGAGACCACTGTTTCCAAGGCCAAAGAGATCCGACGCGAGGCTGATAAAATGGTGCAGCTTGGAAAAGATGGCTCCTTGTGTGCCGCAAGGCGTGCTGCTGCTTTTGTGCGTGGGGATGATGTACTTCACAAGCTATTTACAGAACTGGCTTATCGATACAAGGATCGAGTAGGCGGATACACAAGACTACTTAGGACTCGTATACGAGTTGGTGATGCTGCACCTATGGCCTATATTGAGTTCATTGACAGAGAAAATGAGCTCAGACAATCAAAACTACCAGCCCCTCAACCACCAGAGAGAGTTCCTTTAGATCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0015934 GO:0022625 GO:0022626 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L17

Protein Analysis

138

Amino Acids

15.84

Weight (kDa)

10.34

Isoelectric Point (pI)

49.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008477)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09770 AT5G64650
fragaria_vesca	FvH4_3g14560 FvH4_3g14560 FvH4_3g14560 FvH4_3g14560 FvH4_3g14560
malus_domestica	MD01G1012100.v1.1 MD15G1337900.v1.1
prunus_persica	Prupe.6G158000_v2.0.a1 Prupe.6G158000_v2.0.a1
pyrus_communis	pycom01g04310 pycom15g28860
rosa_chinensis	RchiOBHm_Chr5g0024011
rosa_laevigata	RLG00000032754
rosa_multiflora	Rmu_sc0005837.1_g000012 Rmu_sc0011761.1_g000001
rosa_roxburghii	Rroxscaffold_1G00055230
rosa_rugosa	Rorug05G0080700
rosa_samantha	Rh5BG167900 Rh5CG183400 Rh5DG170100
rosa_wichuraiana	Rw5G015490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	33, 64
AccI	GTMKAC	1 cut(s)	295
AccII	CGCG	1 cut(s)	129
AciI	CCGC	3 cut(s)	40, 177, 267
AclWI	GGATC	3 cut(s)	115, 264, 401
AfaI	GTAC	1 cut(s)	216
AfiI	CCNNNNNNNGG	3 cut(s)	31, 54, 130
AluBI	AGCT	4 cut(s)	19, 151, 226, 355
AluI	AGCT	4 cut(s)	19, 151, 226, 355
Alw21I	GWGCWC	1 cut(s)	357
Alw26I	GTCTC	1 cut(s)	89
AlwI	GGATC	3 cut(s)	115, 264, 401
AoxI	GGCC	2 cut(s)	111, 321
ApeKI	GCWGC	4 cut(s)	148, 188, 191, 311
AspLEI	GCGC	1 cut(s)	90
AsuHPI	GGTGA	3 cut(s)	29, 88, 317
BanII	GRGCYC	1 cut(s)	357
Bbv12I	GWGCWC	1 cut(s)	357
BbvI	GCAGC	4 cut(s)	160, 175, 178, 298
BccI	CCATC	2 cut(s)	55, 155
BciVI	GTATCC	1 cut(s)	263
BcoDI	GTCTC	1 cut(s)	89
BfuI	GTATCC	1 cut(s)	263
BisI	GCNGC	5 cut(s)	149, 177, 189, 192, 312
BlsI	GCNGC	5 cut(s)	150, 178, 190, 193, 313
BmiI	GGNNCC	1 cut(s)	166
BmsI	GCATC	1 cut(s)	298
Bpu10I	CCTNAGC	1 cut(s)	53
Bsa29I	ATCGAT	1 cut(s)	247
BsaI	GGTCTC	1 cut(s)	89
BsaJI	CCNNGG	2 cut(s)	30, 108
Bsc4I	CCNNNNNNNGG	3 cut(s)	31, 54, 130
Bse1I	ACTGG	1 cut(s)	243
BseCI	ATCGAT	1 cut(s)	247
BseDI	CCNNGG	2 cut(s)	30, 108
BseGI	GGATG	1 cut(s)	214
BseLI	CCNNNNNNNGG	3 cut(s)	31, 54, 130
BseMII	CTCAG	2 cut(s)	67, 370
BseNI	ACTGG	1 cut(s)	243
BseXI	GCAGC	4 cut(s)	160, 175, 178, 298
BsgI	GTGCAG	2 cut(s)	167, 297
Bsh1236I	CGCG	1 cut(s)	129
BshFI	GGCC	2 cut(s)	113, 323
BshVI	ATCGAT	1 cut(s)	247
BsiHKAI	GWGCWC	1 cut(s)	357
BslI	CCNNNNNNNGG	3 cut(s)	31, 54, 130
BsmAI	GTCTC	1 cut(s)	89
BsnI	GGCC	2 cut(s)	113, 323
Bso31I	GGTCTC	1 cut(s)	89
Bsp1286I	GDGCHC	1 cut(s)	357
Bsp143I	GATC	3 cut(s)	120, 256, 406
BspACI	CCGC	3 cut(s)	40, 177, 267
BspANI	GGCC	2 cut(s)	113, 323
BspCNI	CTCAG	2 cut(s)	66, 369
BspDI	ATCGAT	1 cut(s)	247
BspFNI	CGCG	1 cut(s)	129
BspLI	GGNNCC	1 cut(s)	166
BspPI	GGATC	3 cut(s)	115, 264, 401
BspTNI	GGTCTC	1 cut(s)	89
BsrI	ACTGG	1 cut(s)	243
BssECI	CCNNGG	2 cut(s)	30, 108
BssMI	GATC	3 cut(s)	120, 256, 406
BssNAI	GTATAC	1 cut(s)	296
BssT1I	CCWWGG	1 cut(s)	108
Bst1107I	GTATAC	1 cut(s)	296
Bst4CI	ACNGT	1 cut(s)	103
BstAPI	GCANNNNNTGC	1 cut(s)	185
BstC8I	GCNNGC	1 cut(s)	186
BstDEI	CTNAG	3 cut(s)	53, 284, 356
BstDSI	CCRYGG	1 cut(s)	30
BstEII	GGTNACC	1 cut(s)	35
BstF5I	GGATG	1 cut(s)	214
BstFNI	CGCG	1 cut(s)	129
BstHHI	GCGC	1 cut(s)	90
BstKTI	GATC	3 cut(s)	123, 259, 409
BstMAI	GTCTC	1 cut(s)	89
BstMBI	GATC	3 cut(s)	120, 256, 406
BstMWI	GCNNNNNNNGC	2 cut(s)	185, 320
BstNSI	RCATGY	1 cut(s)	46
BstPI	GGTNACC	1 cut(s)	35
BstUI	CGCG	1 cut(s)	129
BstV1I	GCAGC	4 cut(s)	160, 175, 178, 298
BstX2I	RGATCY	2 cut(s)	120, 406
BstYI	RGATCY	2 cut(s)	120, 406
BstZ17I	GTATAC	1 cut(s)	296
Bsu15I	ATCGAT	1 cut(s)	247
BsuI	GTATCC	1 cut(s)	263
BsuRI	GGCC	2 cut(s)	113, 323
BsuTUI	ATCGAT	1 cut(s)	247
BtgI	CCRYGG	1 cut(s)	30
BtsCI	GGATG	1 cut(s)	214
BtsIMutI	CAGTG	1 cut(s)	99
Cac8I	GCNNGC	1 cut(s)	186
CfoI	GCGC	1 cut(s)	90
ClaI	ATCGAT	1 cut(s)	247
CseI	GACGC	1 cut(s)	135
Csp6I	GTAC	1 cut(s)	215
CviAII	CATG	3 cut(s)	43, 49, 83
CviQI	GTAC	1 cut(s)	215
DdeI	CTNAG	3 cut(s)	53, 284, 356
DpnI	GATC	3 cut(s)	122, 258, 408
DpnII	GATC	3 cut(s)	120, 256, 406
DrdI	GACNNNNNNGTC	2 cut(s)	33, 64
DseDI	GACNNNNNNGTC	2 cut(s)	33, 64
EciI	GGCGGA	1 cut(s)	282
Ecl136II	GAGCTC	1 cut(s)	355
Eco130I	CCWWGG	1 cut(s)	108
Eco24I	GRGCYC	1 cut(s)	357
Eco31I	GGTCTC	1 cut(s)	89
Eco53kI	GAGCTC	1 cut(s)	355
Eco91I	GGTNACC	1 cut(s)	35
EcoICRI	GAGCTC	1 cut(s)	355
EcoO65I	GGTNACC	1 cut(s)	35
EcoT14I	CCWWGG	1 cut(s)	108
EcoT38I	GRGCYC	1 cut(s)	357
ErhI	CCWWGG	1 cut(s)	108
FaeI	CATG	3 cut(s)	46, 52, 86
FaiI	YATR	6 cut(s)	44, 50, 84, 296, 320, 327
FatI	CATG	3 cut(s)	42, 48, 82
FblI	GTMKAC	1 cut(s)	295
Fnu4HI	GCNGC	5 cut(s)	149, 177, 189, 192, 312
FokI	GGATG	1 cut(s)	221
FriOI	GRGCYC	1 cut(s)	357
Fsp4HI	GCNGC	5 cut(s)	149, 177, 189, 192, 312
GlaI	GCGC	1 cut(s)	89
GluI	GCNGC	5 cut(s)	149, 177, 189, 192, 312
HaeIII	GGCC	2 cut(s)	113, 323
HgaI	GACGC	1 cut(s)	135
HhaI	GCGC	1 cut(s)	90
Hin1II	CATG	3 cut(s)	46, 52, 86
Hin6I	GCGC	1 cut(s)	88
HinP1I	GCGC	1 cut(s)	88
HinfI	GANTC	1 cut(s)	289
HphI	GGTGA	3 cut(s)	29, 88, 317
Hpy166II	GTNNAC	1 cut(s)	296
Hpy188I	TCNGA	2 cut(s)	125, 359
Hpy188III	TCNNGA	2 cut(s)	13, 55
Hpy8I	GTNNAC	1 cut(s)	296
Hpy99I	CGWCG	1 cut(s)	129
HpyCH4III	ACNGT	1 cut(s)	103
HpyCH4V	TGCA	2 cut(s)	148, 314
HpyF10VI	GCNNNNNNNGC	2 cut(s)	185, 320
HpyF3I	CTNAG	3 cut(s)	53, 284, 356
Hsp92II	CATG	3 cut(s)	46, 52, 86
HspAI	GCGC	1 cut(s)	88
Kzo9I	GATC	3 cut(s)	120, 256, 406
LmnI	GCTCC	1 cut(s)	170
LpnPI	CCDG	4 cut(s)	40, 224, 387, 402
Lsp1109I	GCAGC	4 cut(s)	160, 175, 178, 298
LweI	GCATC	1 cut(s)	298
MaeIII	GTNAC	1 cut(s)	35
MalI	GATC	3 cut(s)	122, 258, 408
MboI	GATC	3 cut(s)	120, 256, 406
MflI	RGATCY	2 cut(s)	120, 406
MhlI	GDGCHC	1 cut(s)	357
MlyI	GAGTC	1 cut(s)	283
MmeI	TCCRAC	1 cut(s)	148
MnlI	CCTC	2 cut(s)	124, 390
MslI	CAYNNNNRTG	1 cut(s)	47
MvnI	CGCG	1 cut(s)	129
MwoI	GCNNNNNNNGC	2 cut(s)	185, 320
NdeII	GATC	3 cut(s)	120, 256, 406
NlaIII	CATG	3 cut(s)	46, 52, 86
NlaIV	GGNNCC	1 cut(s)	166
NmuCI	GTSAC	1 cut(s)	35
NspI	RCATGY	1 cut(s)	46
PkrI	GCNGC	5 cut(s)	150, 178, 190, 193, 313
PleI	GAGTC	1 cut(s)	283
PpsI	GAGTC	1 cut(s)	283
Psp124BI	GAGCTC	1 cut(s)	357
PspEI	GGTNACC	1 cut(s)	35
PspN4I	GGNNCC	1 cut(s)	166
PsuI	RGATCY	2 cut(s)	120, 406
RsaI	GTAC	1 cut(s)	216
RsaNI	GTAC	1 cut(s)	215
RseI	CAYNNNNRTG	1 cut(s)	47
SacI	GAGCTC	1 cut(s)	357
SatI	GCNGC	5 cut(s)	149, 177, 189, 192, 312
Sau3AI	GATC	3 cut(s)	120, 256, 406
SchI	GAGTC	1 cut(s)	283
SduI	GDGCHC	1 cut(s)	357
SetI	ASST	5 cut(s)	21, 153, 228, 319, 357
SfaNI	GCATC	1 cut(s)	298
SmiMI	CAYNNNNRTG	1 cut(s)	47
SsiI	CCGC	3 cut(s)	40, 177, 267
SstI	GAGCTC	1 cut(s)	357
StyI	CCWWGG	1 cut(s)	108
TaaI	ACNGT	1 cut(s)	103
TaqI	TCGA	2 cut(s)	247, 259
TatI	WGTACW	1 cut(s)	214
TauI	GCSGC	1 cut(s)	179
TscAI	CASTG	1 cut(s)	106
TseFI	GTSAC	1 cut(s)	35
TseI	GCWGC	4 cut(s)	148, 188, 191, 311
Tsp45I	GTSAC	1 cut(s)	35
TspDTI	ATGAA	1 cut(s)	325
TspRI	CASTG	1 cut(s)	106
XceI	RCATGY	1 cut(s)	46
XmiI	GTMKAC	1 cut(s)	295

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.