Rw5G015490

Belongs to the bacterial ribosomal protein bL17 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0008477
Physical Location & Seq
Reverse (-)
19240169 .. 19241927
1759 bp
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UTR
Exon/CDS
Intron
Rw5G015490.1

Sequence Viewer

Length: 438 bp
ATGCTGAGGACGATGGTGTCGCAGTTGGTGAAGCACGAGCGCATTGAAACCACCGTTGCCAAGGCAAAAGAGGTTCGACGTCAGGCTGATAGAATGGTGCAGCTTGGAAAAGATGGTTCACTCTGTGCGGCGAGGCGTGCTGCTGCTTTTGTGCGTGGGGATGATGTAATTCACAAGCTATTTACCGAACTGGCCTATCGATACAAAGATCGAGTAGGTGGATATACAAGACTGCTTCGGACACGTATACGAGTTGGTGATGCTGCGCCCATGGCCTATATTGAGTTCATTGACAGAGAAAATGAGCTCAGAGAATCAAAACCACCGGCCCCTCAACCACCACCACCAAGAGTTCCCTTGGATCCTTGGGCAAGATCCAAGCTTTGCAAGCAGTTTGCACCCCCTAAAGAAGATAAAAACAAGAGTTCCGAGATTTGA

Protein Analysis

145

Amino Acids

16.61

Weight (kDa)

10.0

Isoelectric Point (pI)

52.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L17 PF01196 1 - 97 2.1e-35 Ribosomal protein L17
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 16
AatII GACGTC 1 cut(s) 82
AccI GTMKAC 1 cut(s) 247
AciI CCGC 1 cut(s) 128
AclWI GGATC 3 cut(s) 356, 369, 369
AcyI GRCGYC 1 cut(s) 79
AdeI CACNNNGTG 1 cut(s) 125
AflIII ACRYGT 1 cut(s) 242
AgsI TTSAA 1 cut(s) 47
AluBI AGCT 4 cut(s) 103, 178, 307, 382
AluI AGCT 4 cut(s) 103, 178, 307, 382
Alw21I GWGCWC 1 cut(s) 309
AlwI GGATC 3 cut(s) 356, 369, 369
AoxI GGCC 3 cut(s) 192, 273, 327
ApeKI GCWGC 4 cut(s) 100, 140, 143, 263
AspLEI GCGC 2 cut(s) 42, 268
AspS9I GGNCC 1 cut(s) 328
AsuHPI GGTGA 2 cut(s) 40, 269
BamHI GGATCC 1 cut(s) 361
BanII GRGCYC 1 cut(s) 309
BauI CACGAG 1 cut(s) 35
Bbv12I GWGCWC 1 cut(s) 309
BbvCI CCTCAGC 1 cut(s) 5
BbvI GCAGC 4 cut(s) 112, 127, 130, 250
BccI CCATC 2 cut(s) 7, 107
BisI GCNGC 5 cut(s) 101, 129, 141, 144, 264
BlsI GCNGC 5 cut(s) 102, 130, 142, 145, 265
BmgT120I GGNCC 1 cut(s) 328
BmiI GGNNCC 2 cut(s) 330, 363
BmsI GCATC 1 cut(s) 250
Bpu10I CCTNAGC 1 cut(s) 5
Bsa29I ATCGAT 1 cut(s) 199
BsaAI YACGTR 1 cut(s) 245
BsaHI GRCGYC 1 cut(s) 79
BsaJI CCNNGG 4 cut(s) 60, 270, 357, 365
Bse118I RCCGGY 1 cut(s) 325
Bse1I ACTGG 1 cut(s) 195
BseCI ATCGAT 1 cut(s) 199
BseDI CCNNGG 4 cut(s) 60, 270, 357, 365
BseGI GGATG 1 cut(s) 166
BseMII CTCAG 1 cut(s) 322
BseNI ACTGG 1 cut(s) 195
BseXI GCAGC 4 cut(s) 112, 127, 130, 250
BsgI GTGCAG 1 cut(s) 119
BshFI GGCC 3 cut(s) 194, 275, 329
BshVI ATCGAT 1 cut(s) 199
BsiHKAI GWGCWC 1 cut(s) 309
BsiSI CCGG 1 cut(s) 326
BsnI GGCC 3 cut(s) 194, 275, 329
Bsp1286I GDGCHC 1 cut(s) 309
Bsp143I GATC 3 cut(s) 208, 361, 374
Bsp19I CCATGG 1 cut(s) 270
BspACI CCGC 1 cut(s) 128
BspANI GGCC 3 cut(s) 194, 275, 329
BspCNI CTCAG 1 cut(s) 321
BspDI ATCGAT 1 cut(s) 199
BspLI GGNNCC 2 cut(s) 330, 363
BspPI GGATC 3 cut(s) 356, 369, 369
BsrFI RCCGGY 1 cut(s) 325
BsrI ACTGG 1 cut(s) 195
BssAI RCCGGY 1 cut(s) 325
BssECI CCNNGG 4 cut(s) 60, 270, 357, 365
BssMI GATC 3 cut(s) 208, 361, 374
BssNAI GTATAC 1 cut(s) 248
BssNI GRCGYC 1 cut(s) 79
BssSI CACGAG 1 cut(s) 35
BssT1I CCWWGG 4 cut(s) 60, 270, 357, 365
Bst1107I GTATAC 1 cut(s) 248
Bst2BI CACGAG 1 cut(s) 35
Bst4CI ACNGT 1 cut(s) 55
BstACI GRCGYC 1 cut(s) 79
BstBAI YACGTR 1 cut(s) 245
BstC8I GCNNGC 2 cut(s) 138, 389
BstDEI CTNAG 2 cut(s) 5, 308
BstDSI CCRYGG 1 cut(s) 270
BstF5I GGATG 1 cut(s) 166
BstHHI GCGC 2 cut(s) 42, 268
BstKTI GATC 3 cut(s) 211, 364, 377
BstMBI GATC 3 cut(s) 208, 361, 374
BstMWI GCNNNNNNNGC 3 cut(s) 137, 272, 388
BstV1I GCAGC 4 cut(s) 112, 127, 130, 250
BstX2I RGATCY 2 cut(s) 361, 374
BstYI RGATCY 2 cut(s) 361, 374
BstZ17I GTATAC 1 cut(s) 248
Bsu15I ATCGAT 1 cut(s) 199
BsuRI GGCC 3 cut(s) 194, 275, 329
BsuTUI ATCGAT 1 cut(s) 199
BtgI CCRYGG 1 cut(s) 270
BtsCI GGATG 1 cut(s) 166
Cac8I GCNNGC 2 cut(s) 138, 389
CfoI GCGC 2 cut(s) 42, 268
Cfr10I RCCGGY 1 cut(s) 325
Cfr13I GGNCC 1 cut(s) 328
ClaI ATCGAT 1 cut(s) 199
CviAII CATG 1 cut(s) 271
CviJI RGCY 8 cut(s) 86, 103, 178, 194, 275, 307, 329, 382
CviKI_1 RGCY 8 cut(s) 86, 103, 178, 194, 275, 307, 329, 382
DdeI CTNAG 2 cut(s) 5, 308
DpnI GATC 3 cut(s) 210, 363, 376
DpnII GATC 3 cut(s) 208, 361, 374
DraIII CACNNNGTG 1 cut(s) 125
DrdI GACNNNNNNGTC 1 cut(s) 16
DseDI GACNNNNNNGTC 1 cut(s) 16
Ecl136II GAGCTC 1 cut(s) 307
Eco130I CCWWGG 4 cut(s) 60, 270, 357, 365
Eco24I GRGCYC 1 cut(s) 309
Eco53kI GAGCTC 1 cut(s) 307
EcoICRI GAGCTC 1 cut(s) 307
EcoT14I CCWWGG 4 cut(s) 60, 270, 357, 365
EcoT38I GRGCYC 1 cut(s) 309
ErhI CCWWGG 4 cut(s) 60, 270, 357, 365
FaeI CATG 1 cut(s) 274
FaiI YATR 4 cut(s) 225, 248, 272, 279
FatI CATG 1 cut(s) 270
FblI GTMKAC 1 cut(s) 247
Fnu4HI GCNGC 5 cut(s) 101, 129, 141, 144, 264
FokI GGATG 1 cut(s) 173
FriOI GRGCYC 1 cut(s) 309
Fsp4HI GCNGC 5 cut(s) 101, 129, 141, 144, 264
GlaI GCGC 2 cut(s) 41, 267
GluI GCNGC 5 cut(s) 101, 129, 141, 144, 264
HaeIII GGCC 3 cut(s) 194, 275, 329
HapII CCGG 1 cut(s) 326
HhaI GCGC 2 cut(s) 42, 268
Hin1I GRCGYC 1 cut(s) 79
Hin1II CATG 1 cut(s) 274
Hin6I GCGC 2 cut(s) 40, 266
HinP1I GCGC 2 cut(s) 40, 266
HindIII AAGCTT 1 cut(s) 380
HinfI GANTC 1 cut(s) 314
HpaII CCGG 1 cut(s) 326
HphI GGTGA 2 cut(s) 40, 269
Hpy166II GTNNAC 2 cut(s) 119, 248
Hpy188I TCNGA 3 cut(s) 240, 311, 430
Hpy8I GTNNAC 2 cut(s) 119, 248
Hpy99I CGWCG 1 cut(s) 81
HpyCH4III ACNGT 1 cut(s) 55
HpyCH4IV ACGT 2 cut(s) 79, 244
HpyCH4V TGCA 3 cut(s) 100, 387, 398
HpyF10VI GCNNNNNNNGC 3 cut(s) 137, 272, 388
HpyF3I CTNAG 2 cut(s) 5, 308
HpySE526I ACGT 2 cut(s) 79, 244
Hsp92I GRCGYC 1 cut(s) 79
Hsp92II CATG 1 cut(s) 274
HspAI GCGC 2 cut(s) 40, 266
Kzo9I GATC 3 cut(s) 208, 361, 374
LpnPI CCDG 3 cut(s) 68, 176, 339
Lsp1109I GCAGC 4 cut(s) 112, 127, 130, 250
LweI GCATC 1 cut(s) 250
MaeII ACGT 2 cut(s) 79, 244
MalI GATC 3 cut(s) 210, 363, 376
MboI GATC 3 cut(s) 208, 361, 374
MboII GAAGA 1 cut(s) 422
MflI RGATCY 2 cut(s) 361, 374
MhlI GDGCHC 1 cut(s) 309
MluCI AATT 1 cut(s) 168
MnlI CCTC 3 cut(s) 64, 126, 342
MspI CCGG 1 cut(s) 326
MwoI GCNNNNNNNGC 3 cut(s) 137, 272, 388
NcoI CCATGG 1 cut(s) 270
NdeII GATC 3 cut(s) 208, 361, 374
NlaIII CATG 1 cut(s) 274
NlaIV GGNNCC 2 cut(s) 330, 363
PfeI GAWTC 1 cut(s) 314
PkrI GCNGC 5 cut(s) 102, 130, 142, 145, 265
Ppu21I YACGTR 1 cut(s) 245
Psp124BI GAGCTC 1 cut(s) 309
PspN4I GGNNCC 2 cut(s) 330, 363
PspPI GGNCC 1 cut(s) 328
PsuI RGATCY 2 cut(s) 361, 374
SacI GAGCTC 1 cut(s) 309
SatI GCNGC 5 cut(s) 101, 129, 141, 144, 264
Sau3AI GATC 3 cut(s) 208, 361, 374
Sau96I GGNCC 1 cut(s) 328
SduI GDGCHC 1 cut(s) 309
SetI ASST 8 cut(s) 75, 82, 105, 180, 220, 247, 309, 384
SfaNI GCATC 1 cut(s) 250
Sse9I AATT 1 cut(s) 168
SsiI CCGC 1 cut(s) 128
SstI GAGCTC 1 cut(s) 309
StyI CCWWGG 4 cut(s) 60, 270, 357, 365
TaaI ACNGT 1 cut(s) 55
TaiI ACGT 2 cut(s) 82, 247
TaqI TCGA 3 cut(s) 76, 199, 211
TasI AATT 1 cut(s) 168
TauI GCSGC 1 cut(s) 131
TfiI GAWTC 1 cut(s) 314
TseI GCWGC 4 cut(s) 100, 140, 143, 263
TspDTI ATGAA 1 cut(s) 277
XmiI GTMKAC 1 cut(s) 247
ZraI GACGTC 1 cut(s) 80
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.