FvH4_3g14560

Belongs to the bacterial ribosomal protein bL17 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0008477
Physical Location & Seq
Reverse (-)
8982411 .. 8984637
2227 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g14560.t4

Sequence Viewer

Length: 486 bp
ATGACGAAGTTAAGGAAGCTGAACCGAACCACGGCCCATCGTATATCTATGCTGAAGACGATGGTGTCTCAGTTGGTGAAGCACGAGCGAATTGAAACCACTGTTGCCAAGGCAAAAGAGGTTCGTCGTCAGGCTGATAGAATGGTGCAGCTTGGGAAAGACGGTTCACTCTGTGCAGCGAGGCGTGCTGCTGCATTTGTACGTGGGGATGATGTAATTCACAAGTTATTTACAGAACTGGCCTATCGATACAAAGATCGAGTAGGTGGATACACAAGAATGCTTCGGACACGGATAAGAGTTGGTGATGCTGCACCCATGGCCTATATTGAGTTCATTGACAGAGACAATGAGCTCAGACAATCAAAACCACCGGCCCCTCAACCACCACCACCAAGAGTTCCCTTGGATCCTTGGGCTAGATCCAAACTTTGCAAGCAGTTTGCACCCCCTAAAGAAGATAAGAGCAAGAGCACCGAGATTTGA

Protein Analysis

162

Amino Acids

18.48

Weight (kDa)

10.4

Isoelectric Point (pI)

45.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L17 PF01196 17 - 113 2.8e-35 Ribosomal protein L17
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 64
AclWI GGATC 3 cut(s) 404, 417, 417
AcuI CTGAAG 1 cut(s) 74
AdeI CACNNNGTG 1 cut(s) 173
AfaI GTAC 1 cut(s) 201
AfiI CCNNNNNNNGG 1 cut(s) 31
AgsI TTSAA 1 cut(s) 95
AloI GAACNNNNNNTCC 2 cut(s) 148, 180
AluBI AGCT 3 cut(s) 19, 151, 355
AluI AGCT 3 cut(s) 19, 151, 355
Alw21I GWGCWC 2 cut(s) 357, 476
Alw26I GTCTC 2 cut(s) 72, 339
AlwI GGATC 3 cut(s) 404, 417, 417
AoxI GGCC 4 cut(s) 33, 240, 321, 375
ApeKI GCWGC 5 cut(s) 148, 176, 188, 191, 311
AspS9I GGNCC 2 cut(s) 34, 376
AsuHPI GGTGA 2 cut(s) 88, 317
BamHI GGATCC 1 cut(s) 409
BanII GRGCYC 1 cut(s) 357
BauI CACGAG 1 cut(s) 83
BbsI GAAGAC 1 cut(s) 62
Bbv12I GWGCWC 2 cut(s) 357, 476
BbvI GCAGC 5 cut(s) 160, 175, 178, 188, 298
BccI CCATC 2 cut(s) 45, 55
BceAI ACGGC 1 cut(s) 48
BciVI GTATCC 1 cut(s) 263
BcoDI GTCTC 2 cut(s) 72, 339
BfaI CTAG 1 cut(s) 420
BfuI GTATCC 1 cut(s) 263
BisI GCNGC 5 cut(s) 149, 177, 189, 192, 312
BlsI GCNGC 5 cut(s) 150, 178, 190, 193, 313
BmgT120I GGNCC 2 cut(s) 34, 376
BmiI GGNNCC 2 cut(s) 378, 411
BmsI GCATC 1 cut(s) 298
BpiI GAAGAC 1 cut(s) 62
Bsa29I ATCGAT 1 cut(s) 247
BsaAI YACGTR 1 cut(s) 203
BsaJI CCNNGG 5 cut(s) 30, 108, 318, 405, 413
Bsc4I CCNNNNNNNGG 1 cut(s) 31
Bse118I RCCGGY 1 cut(s) 373
Bse1I ACTGG 1 cut(s) 243
BseCI ATCGAT 1 cut(s) 247
BseDI CCNNGG 5 cut(s) 30, 108, 318, 405, 413
BseGI GGATG 1 cut(s) 214
BseLI CCNNNNNNNGG 1 cut(s) 31
BseMII CTCAG 2 cut(s) 83, 370
BseNI ACTGG 1 cut(s) 243
BseXI GCAGC 5 cut(s) 160, 175, 178, 188, 298
BsgI GTGCAG 3 cut(s) 167, 195, 297
BshFI GGCC 4 cut(s) 35, 242, 323, 377
BshVI ATCGAT 1 cut(s) 247
BsiHKAI GWGCWC 2 cut(s) 357, 476
BsiSI CCGG 1 cut(s) 374
BslI CCNNNNNNNGG 1 cut(s) 31
BsmAI GTCTC 2 cut(s) 72, 339
BsmI GAATGC 1 cut(s) 285
BsnI GGCC 4 cut(s) 35, 242, 323, 377
Bsp1286I GDGCHC 2 cut(s) 357, 476
Bsp143I GATC 3 cut(s) 256, 409, 422
Bsp19I CCATGG 1 cut(s) 318
BspANI GGCC 4 cut(s) 35, 242, 323, 377
BspCNI CTCAG 2 cut(s) 82, 369
BspDI ATCGAT 1 cut(s) 247
BspLI GGNNCC 2 cut(s) 378, 411
BspPI GGATC 3 cut(s) 404, 417, 417
BsrFI RCCGGY 1 cut(s) 373
BsrI ACTGG 1 cut(s) 243
BssAI RCCGGY 1 cut(s) 373
BssECI CCNNGG 5 cut(s) 30, 108, 318, 405, 413
BssMI GATC 3 cut(s) 256, 409, 422
BssSI CACGAG 1 cut(s) 83
BssT1I CCWWGG 4 cut(s) 108, 318, 405, 413
Bst2BI CACGAG 1 cut(s) 83
Bst4CI ACNGT 2 cut(s) 103, 164
BstBAI YACGTR 1 cut(s) 203
BstC8I GCNNGC 2 cut(s) 186, 437
BstDEI CTNAG 2 cut(s) 69, 356
BstDSI CCRYGG 2 cut(s) 30, 318
BstF5I GGATG 1 cut(s) 214
BstKTI GATC 3 cut(s) 259, 412, 425
BstMAI GTCTC 2 cut(s) 72, 339
BstMBI GATC 3 cut(s) 256, 409, 422
BstMWI GCNNNNNNNGC 2 cut(s) 185, 320
BstV1I GCAGC 5 cut(s) 160, 175, 178, 188, 298
BstV2I GAAGAC 1 cut(s) 62
BstX2I RGATCY 2 cut(s) 409, 422
BstYI RGATCY 2 cut(s) 409, 422
Bsu15I ATCGAT 1 cut(s) 247
BsuI GTATCC 1 cut(s) 263
BsuRI GGCC 4 cut(s) 35, 242, 323, 377
BsuTUI ATCGAT 1 cut(s) 247
BtgI CCRYGG 2 cut(s) 30, 318
BtsCI GGATG 1 cut(s) 214
BtsIMutI CAGTG 1 cut(s) 99
Cac8I GCNNGC 2 cut(s) 186, 437
Cfr10I RCCGGY 1 cut(s) 373
Cfr13I GGNCC 2 cut(s) 34, 376
ClaI ATCGAT 1 cut(s) 247
Csp6I GTAC 1 cut(s) 200
CviAII CATG 1 cut(s) 319
CviJI RGCY 9 cut(s) 19, 35, 134, 151, 242, 323, 355, 377, 419
CviKI_1 RGCY 9 cut(s) 19, 35, 134, 151, 242, 323, 355, 377, 419
CviQI GTAC 1 cut(s) 200
DdeI CTNAG 2 cut(s) 69, 356
DpnI GATC 3 cut(s) 258, 411, 424
DpnII GATC 3 cut(s) 256, 409, 422
DraIII CACNNNGTG 1 cut(s) 173
DrdI GACNNNNNNGTC 1 cut(s) 64
DseDI GACNNNNNNGTC 1 cut(s) 64
Ecl136II GAGCTC 1 cut(s) 355
Eco130I CCWWGG 4 cut(s) 108, 318, 405, 413
Eco24I GRGCYC 1 cut(s) 357
Eco53kI GAGCTC 1 cut(s) 355
Eco57I CTGAAG 1 cut(s) 74
EcoICRI GAGCTC 1 cut(s) 355
EcoT14I CCWWGG 4 cut(s) 108, 318, 405, 413
EcoT38I GRGCYC 1 cut(s) 357
ErhI CCWWGG 4 cut(s) 108, 318, 405, 413
FaeI CATG 1 cut(s) 322
FaiI YATR 4 cut(s) 44, 50, 320, 327
FatI CATG 1 cut(s) 318
Fnu4HI GCNGC 5 cut(s) 149, 177, 189, 192, 312
FokI GGATG 1 cut(s) 221
FriOI GRGCYC 1 cut(s) 357
Fsp4HI GCNGC 5 cut(s) 149, 177, 189, 192, 312
FspBI CTAG 1 cut(s) 420
GluI GCNGC 5 cut(s) 149, 177, 189, 192, 312
HaeIII GGCC 4 cut(s) 35, 242, 323, 377
HapII CCGG 1 cut(s) 374
Hin1II CATG 1 cut(s) 322
HpaII CCGG 1 cut(s) 374
HphI GGTGA 2 cut(s) 88, 317
Hpy166II GTNNAC 1 cut(s) 167
Hpy188I TCNGA 2 cut(s) 288, 359
Hpy8I GTNNAC 1 cut(s) 167
Hpy99I CGWCG 1 cut(s) 129
HpyCH4III ACNGT 2 cut(s) 103, 164
HpyCH4IV ACGT 1 cut(s) 202
HpyCH4V TGCA 6 cut(s) 148, 176, 194, 314, 435, 446
HpyF10VI GCNNNNNNNGC 2 cut(s) 185, 320
HpyF3I CTNAG 2 cut(s) 69, 356
HpySE526I ACGT 1 cut(s) 202
Hsp92II CATG 1 cut(s) 322
Kzo9I GATC 3 cut(s) 256, 409, 422
LpnPI CCDG 3 cut(s) 116, 224, 387
Lsp1109I GCAGC 5 cut(s) 160, 175, 178, 188, 298
LweI GCATC 1 cut(s) 298
MaeI CTAG 1 cut(s) 420
MaeII ACGT 1 cut(s) 202
MalI GATC 3 cut(s) 258, 411, 424
MboI GATC 3 cut(s) 256, 409, 422
MboII GAAGA 2 cut(s) 67, 470
MflI RGATCY 2 cut(s) 409, 422
MhlI GDGCHC 2 cut(s) 357, 476
MluCI AATT 2 cut(s) 90, 216
MnlI CCTC 3 cut(s) 112, 174, 390
MseI TTAA 1 cut(s) 11
MslI CAYNNNNRTG 1 cut(s) 278
MspI CCGG 1 cut(s) 374
Mva1269I GAATGC 1 cut(s) 285
MwoI GCNNNNNNNGC 2 cut(s) 185, 320
NcoI CCATGG 1 cut(s) 318
NdeII GATC 3 cut(s) 256, 409, 422
NlaIII CATG 1 cut(s) 322
NlaIV GGNNCC 2 cut(s) 378, 411
PctI GAATGC 1 cut(s) 285
PkrI GCNGC 5 cut(s) 150, 178, 190, 193, 313
Ppu21I YACGTR 1 cut(s) 203
Psp124BI GAGCTC 1 cut(s) 357
PspN4I GGNNCC 2 cut(s) 378, 411
PspPI GGNCC 2 cut(s) 34, 376
PsuI RGATCY 2 cut(s) 409, 422
RsaI GTAC 1 cut(s) 201
RsaNI GTAC 1 cut(s) 200
RseI CAYNNNNRTG 1 cut(s) 278
SacI GAGCTC 1 cut(s) 357
SaqAI TTAA 1 cut(s) 11
SatI GCNGC 5 cut(s) 149, 177, 189, 192, 312
Sau3AI GATC 3 cut(s) 256, 409, 422
Sau96I GGNCC 2 cut(s) 34, 376
SduI GDGCHC 2 cut(s) 357, 476
SetI ASST 6 cut(s) 21, 123, 153, 205, 268, 357
SfaNI GCATC 1 cut(s) 298
SmiMI CAYNNNNRTG 1 cut(s) 278
Sse9I AATT 2 cut(s) 90, 216
SspMI CTAG 1 cut(s) 420
SstI GAGCTC 1 cut(s) 357
StyI CCWWGG 4 cut(s) 108, 318, 405, 413
TaaI ACNGT 2 cut(s) 103, 164
TaiI ACGT 1 cut(s) 205
TaqI TCGA 2 cut(s) 247, 259
TasI AATT 2 cut(s) 90, 216
Tru1I TTAA 1 cut(s) 11
Tru9I TTAA 1 cut(s) 11
TscAI CASTG 1 cut(s) 106
TseI GCWGC 5 cut(s) 148, 176, 188, 191, 311
TspDTI ATGAA 1 cut(s) 325
TspGWI ACGGA 1 cut(s) 307
TspRI CASTG 1 cut(s) 106
XspI CTAG 1 cut(s) 420
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.