Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008477

Physical Location & Seq

Genomic Coordinates Reverse (-)

3035030 .. 3036596

Gene Structure 1567 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G09770.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGACGAAGTTCAGGAAGCTTGGTCGGCCGGCGGGTCACCGTATGTCCATGCTTAGGACTATGGTTTCTCAGTTGGTGAAGCACGAGCGTATTGAGACCACTGTCACTAAGGCTAAAGAGGTTCGTCGTCTTGCTGATAATATGATTCAACTCGGCAAAGAGGGGTCACTCTCTGCTGCAAGGCGAGCAGCTGGTTTTGTGAGAGGAGATGATGTCCTTCACAAGATTTTCACAGAACTGGCACATAGATACAAAGATAGAGCTGGTGGATACACAAGACTGCTACGTACTCGCATACGAGTTGGTGATGCTGCTCCTATGGCCTATATCGAGTTTATTGACAGAGAGAACGAGCTTAGGCAATCAAAACCAGCAACACCTCAACCACCGCAACGAGTGCCATTGGACCCATGGGAAAGATCTCGGCTCACCAGGCAGTTCGCTCCGCCTAAGGAGGAGAAAATCCCTGATTCTGAGCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0015934 GO:0022625 GO:0022626 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L17

Protein Analysis

160

Amino Acids

18.45

Weight (kDa)

10.6

Isoelectric Point (pI)

51.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L17	PF01196	17 - 113	5.4e-36	Ribosomal protein L17

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008477)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09770 AT5G64650
fragaria_vesca	FvH4_3g14560 FvH4_3g14560 FvH4_3g14560 FvH4_3g14560 FvH4_3g14560
malus_domestica	MD01G1012100.v1.1 MD15G1337900.v1.1
prunus_persica	Prupe.6G158000_v2.0.a1 Prupe.6G158000_v2.0.a1
pyrus_communis	pycom01g04310 pycom15g28860
rosa_chinensis	RchiOBHm_Chr5g0024011
rosa_laevigata	RLG00000032754
rosa_multiflora	Rmu_sc0005837.1_g000012 Rmu_sc0011761.1_g000001
rosa_roxburghii	Rroxscaffold_1G00055230
rosa_rugosa	Rorug05G0080700
rosa_samantha	Rh5BG167900 Rh5CG183400 Rh5DG170100
rosa_wichuraiana	Rw5G015490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	32, 389, 446
AcoI	YGGCCR	1 cut(s)	26
AfaI	GTAC	1 cut(s)	289
AfiI	CCNNNNNNNGG	1 cut(s)	54
AgsI	TTSAA	1 cut(s)	149
AjnI	CCWGG	1 cut(s)	431
AluBI	AGCT	5 cut(s)	19, 191, 263, 355, 478
AluI	AGCT	5 cut(s)	19, 191, 263, 355, 478
Alw26I	GTCTC	1 cut(s)	89
AoxI	GGCC	2 cut(s)	26, 321
ApeKI	GCWGC	3 cut(s)	176, 188, 311
AspS9I	GGNCC	1 cut(s)	406
AsuHPI	GGTGA	4 cut(s)	29, 88, 317, 421
AvaII	GGWCC	1 cut(s)	406
AxyI	CCTNAGG	1 cut(s)	450
BauI	CACGAG	1 cut(s)	83
BbvI	GCAGC	3 cut(s)	163, 200, 298
BciT130I	CCWGG	1 cut(s)	433
BciVI	GTATCC	1 cut(s)	263
BcoDI	GTCTC	1 cut(s)	89
BfuI	GTATCC	1 cut(s)	263
BglII	AGATCT	1 cut(s)	419
BisI	GCNGC	3 cut(s)	177, 189, 312
BlsI	GCNGC	3 cut(s)	178, 190, 313
Bme1390I	CCNGG	1 cut(s)	433
Bme18I	GGWCC	1 cut(s)	406
BmgT120I	GGNCC	1 cut(s)	406
BmiI	GGNNCC	1 cut(s)	408
BmrFI	CCNGG	1 cut(s)	433
BmsI	GCATC	1 cut(s)	298
BoxI	GACNNNNGTC	1 cut(s)	101
Bpu10I	CCTNAGC	2 cut(s)	53, 356
BsaAI	YACGTR	1 cut(s)	287
BsaI	GGTCTC	1 cut(s)	89
BsaJI	CCNNGG	1 cut(s)	410
BsaXI	ACNNNNNCTCC	2 cut(s)	198, 228
Bsc4I	CCNNNNNNNGG	1 cut(s)	54
Bse118I	RCCGGY	1 cut(s)	28
Bse1I	ACTGG	1 cut(s)	243
Bse21I	CCTNAGG	1 cut(s)	450
BseBI	CCWGG	1 cut(s)	433
BseDI	CCNNGG	1 cut(s)	410
BseLI	CCNNNNNNNGG	1 cut(s)	54
BseMII	CTCAG	2 cut(s)	83, 465
BseNI	ACTGG	1 cut(s)	243
BseRI	GAGGAG	2 cut(s)	219, 470
BseX3I	CGGCCG	1 cut(s)	26
BseXI	GCAGC	3 cut(s)	163, 200, 298
Bsh1285I	CGRYCG	1 cut(s)	29
BshFI	GGCC	2 cut(s)	28, 323
BsiEI	CGRYCG	1 cut(s)	29
BsiSI	CCGG	1 cut(s)	29
BslI	CCNNNNNNNGG	1 cut(s)	54
BsmAI	GTCTC	1 cut(s)	89
BsnI	GGCC	2 cut(s)	28, 323
Bso31I	GGTCTC	1 cut(s)	89
Bsp143I	GATC	1 cut(s)	419
Bsp19I	CCATGG	1 cut(s)	410
BspACI	CCGC	3 cut(s)	32, 389, 446
BspANI	GGCC	2 cut(s)	28, 323
BspCNI	CTCAG	2 cut(s)	82, 466
BspLI	GGNNCC	1 cut(s)	408
BspTNI	GGTCTC	1 cut(s)	89
BsrFI	RCCGGY	1 cut(s)	28
BsrI	ACTGG	1 cut(s)	243
BssAI	RCCGGY	1 cut(s)	28
BssECI	CCNNGG	1 cut(s)	410
BssMI	GATC	1 cut(s)	419
BssSI	CACGAG	1 cut(s)	83
BssT1I	CCWWGG	1 cut(s)	410
Bst2BI	CACGAG	1 cut(s)	83
Bst2UI	CCWGG	1 cut(s)	433
Bst4CI	ACNGT	2 cut(s)	41, 103
BstAPI	GCANNNNNTGC	1 cut(s)	397
BstBAI	YACGTR	1 cut(s)	287
BstC8I	GCNNGC	2 cut(s)	30, 186
BstDEI	CTNAG	6 cut(s)	53, 69, 108, 356, 450, 474
BstDSI	CCRYGG	1 cut(s)	410
BstEII	GGTNACC	1 cut(s)	35
BstKTI	GATC	1 cut(s)	422
BstMAI	GTCTC	1 cut(s)	89
BstMBI	GATC	1 cut(s)	419
BstMCI	CGRYCG	1 cut(s)	29
BstMWI	GCNNNNNNNGC	5 cut(s)	25, 185, 320, 397, 433
BstNI	CCWGG	1 cut(s)	433
BstPAI	GACNNNNGTC	1 cut(s)	101
BstPI	GGTNACC	1 cut(s)	35
BstSCI	CCNGG	1 cut(s)	431
BstSNI	TACGTA	1 cut(s)	287
BstV1I	GCAGC	3 cut(s)	163, 200, 298
BstX2I	RGATCY	1 cut(s)	419
BstYI	RGATCY	1 cut(s)	419
BstZI	CGGCCG	1 cut(s)	26
Bsu36I	CCTNAGG	1 cut(s)	450
BsuI	GTATCC	1 cut(s)	263
BsuRI	GGCC	2 cut(s)	28, 323
BtgI	CCRYGG	1 cut(s)	410
BtsIMutI	CAGTG	1 cut(s)	99
Cac8I	GCNNGC	2 cut(s)	30, 186
Cfr10I	RCCGGY	1 cut(s)	28
Cfr13I	GGNCC	1 cut(s)	406
Csp6I	GTAC	1 cut(s)	288
CviAII	CATG	2 cut(s)	49, 411
CviJI	RGCY	9 cut(s)	19, 28, 113, 191, 263, 323, 355, 427, 478
CviKI_1	RGCY	9 cut(s)	19, 28, 113, 191, 263, 323, 355, 427, 478
CviQI	GTAC	1 cut(s)	288
DdeI	CTNAG	6 cut(s)	53, 69, 108, 356, 450, 474
DpnI	GATC	1 cut(s)	421
DpnII	GATC	1 cut(s)	419
EaeI	YGGCCR	1 cut(s)	26
EagI	CGGCCG	1 cut(s)	26
EciI	GGCGGA	1 cut(s)	435
EclXI	CGGCCG	1 cut(s)	26
Eco105I	TACGTA	1 cut(s)	287
Eco130I	CCWWGG	1 cut(s)	410
Eco31I	GGTCTC	1 cut(s)	89
Eco47I	GGWCC	1 cut(s)	406
Eco52I	CGGCCG	1 cut(s)	26
Eco81I	CCTNAGG	1 cut(s)	450
Eco91I	GGTNACC	1 cut(s)	35
EcoO65I	GGTNACC	1 cut(s)	35
EcoRII	CCWGG	1 cut(s)	431
EcoT14I	CCWWGG	1 cut(s)	410
ErhI	CCWWGG	1 cut(s)	410
FaeI	CATG	2 cut(s)	52, 414
FaiI	YATR	9 cut(s)	44, 50, 62, 143, 246, 296, 320, 327, 412
FatI	CATG	2 cut(s)	48, 410
FauI	CCCGC	1 cut(s)	25
Fnu4HI	GCNGC	3 cut(s)	177, 189, 312
Fsp4HI	GCNGC	3 cut(s)	177, 189, 312
GluI	GCNGC	3 cut(s)	177, 189, 312
HaeIII	GGCC	2 cut(s)	28, 323
HapII	CCGG	1 cut(s)	29
Hin1II	CATG	2 cut(s)	52, 414
HindIII	AAGCTT	1 cut(s)	17
HinfI	GANTC	2 cut(s)	145, 470
HpaII	CCGG	1 cut(s)	29
HphI	GGTGA	4 cut(s)	29, 88, 317, 421
Hpy188I	TCNGA	1 cut(s)	475
Hpy188III	TCNNGA	1 cut(s)	13
Hpy99I	CGWCG	1 cut(s)	129
HpyAV	CCTTC	1 cut(s)	227
HpyCH4III	ACNGT	2 cut(s)	41, 103
HpyCH4IV	ACGT	1 cut(s)	286
HpyCH4V	TGCA	1 cut(s)	179
HpyF10VI	GCNNNNNNNGC	5 cut(s)	25, 185, 320, 397, 433
HpyF3I	CTNAG	6 cut(s)	53, 69, 108, 356, 450, 474
HpySE526I	ACGT	1 cut(s)	286
Hsp92II	CATG	2 cut(s)	52, 414
KroI	GCCGGC	1 cut(s)	28
KroNI	GCCGGC	1 cut(s)	30
Kzo9I	GATC	1 cut(s)	419
LmnI	GCTCC	2 cut(s)	319, 448
LpnPI	CCDG	7 cut(s)	42, 177, 224, 249, 384, 418, 445
Lsp1109I	GCAGC	3 cut(s)	163, 200, 298
LweI	GCATC	1 cut(s)	298
MaeII	ACGT	1 cut(s)	286
MaeIII	GTNAC	3 cut(s)	35, 103, 165
MalI	GATC	1 cut(s)	421
MboI	GATC	1 cut(s)	419
MflI	RGATCY	1 cut(s)	419
MnlI	CCTC	5 cut(s)	112, 154, 197, 390, 448
MroNI	GCCGGC	1 cut(s)	28
MspA1I	CMGCKG	1 cut(s)	191
MspI	CCGG	1 cut(s)	29
MspR9I	CCNGG	1 cut(s)	433
MvaI	CCWGG	1 cut(s)	433
MwoI	GCNNNNNNNGC	5 cut(s)	25, 185, 320, 397, 433
NaeI	GCCGGC	1 cut(s)	30
NcoI	CCATGG	1 cut(s)	410
NdeII	GATC	1 cut(s)	419
NgoMIV	GCCGGC	1 cut(s)	28
NlaIII	CATG	2 cut(s)	52, 414
NlaIV	GGNNCC	1 cut(s)	408
NmeAIII	GCCGAG	2 cut(s)	132, 403
NmuCI	GTSAC	3 cut(s)	35, 103, 165
PdiI	GCCGGC	1 cut(s)	30
PfeI	GAWTC	2 cut(s)	145, 470
PkrI	GCNGC	3 cut(s)	178, 190, 313
Ppu21I	YACGTR	1 cut(s)	287
PshAI	GACNNNNGTC	1 cut(s)	101
Psp6I	CCWGG	1 cut(s)	431
PspEI	GGTNACC	1 cut(s)	35
PspGI	CCWGG	1 cut(s)	431
PspN4I	GGNNCC	1 cut(s)	408
PspPI	GGNCC	1 cut(s)	406
PsuI	RGATCY	1 cut(s)	419
PvuII	CAGCTG	1 cut(s)	191
RsaI	GTAC	1 cut(s)	289
RsaNI	GTAC	1 cut(s)	288
SatI	GCNGC	3 cut(s)	177, 189, 312
Sau3AI	GATC	1 cut(s)	419
Sau96I	GGNCC	1 cut(s)	406
ScrFI	CCNGG	1 cut(s)	433
SetI	ASST	8 cut(s)	21, 123, 193, 265, 289, 357, 382, 480
SfaNI	GCATC	1 cut(s)	298
SinI	GGWCC	1 cut(s)	406
SnaBI	TACGTA	1 cut(s)	287
SsiI	CCGC	3 cut(s)	32, 389, 446
StyD4I	CCNGG	1 cut(s)	431
StyI	CCWWGG	1 cut(s)	410
TaaI	ACNGT	2 cut(s)	41, 103
TaiI	ACGT	1 cut(s)	289
TaqI	TCGA	1 cut(s)	330
TfiI	GAWTC	2 cut(s)	145, 470
TscAI	CASTG	1 cut(s)	106
TseFI	GTSAC	3 cut(s)	35, 103, 165
TseI	GCWGC	3 cut(s)	176, 188, 311
Tsp45I	GTSAC	3 cut(s)	35, 103, 165
TspRI	CASTG	1 cut(s)	106
VpaK11BI	GGWCC	1 cut(s)	406
XcmI	CCANNNNNNNNNTGG	1 cut(s)	408

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.