AT5G64650

ribosomal protein L17

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0008477
Physical Location & Seq
Reverse (-)
25839244 .. 25841023
1780 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G64650.1

Sequence Viewer

Length: 483 bp
ATGACCAAGTTCAGGAAGCTCGGCCGCCCAGCAGGTCACCGTATGTCCATGCTCAGGACTATGGTTTCTCAATTGGTGCAACACGAGCGAATTGAGACCACTGTTACAAAGGCTAAAGAAGTTCGTCGTCTTGCTGATAATATGATTCAACTCGGAAAAGAGGGTTCACTAGCTGCAGCAAGAAGAGCTGCTGGGTTTGTTAGAGGAGATGATGTACTTCACAAGATTTTTACAGAATTGGCTCATCGATACAAAGATAGAGCTGGTGGATACACAAGAATGCTTCGTACTCGCATTCGTGTTGGTGATGCTGCCCCAATGGCCTATATCGAGTTTATCGATAGAGAGAACGAGCTAAGGCAATCAAAACCAGCTACTCCTCAACCTCCACCTCGAGTGCCACTTGATCCATGGGCTAGATCCCGTCTCACCAGGCAGTATGCTCCACCAAAGGAGGAAAAAACTTCTGATTCTGACCTATAA

Protein Analysis

160

Amino Acids

18.34

Weight (kDa)

10.6

Isoelectric Point (pI)

51.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L17 PF01196 17 - 113 2.2e-36 Ribosomal protein L17
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 23
AciI CCGC 1 cut(s) 25
AclWI GGATC 2 cut(s) 401, 414
AcoI YGGCCR 1 cut(s) 22
AfaI GTAC 2 cut(s) 216, 289
AfiI CCNNNNNNNGG 2 cut(s) 12, 54
AgsI TTSAA 1 cut(s) 149
AjnI CCWGG 1 cut(s) 431
AluBI AGCT 6 cut(s) 19, 173, 188, 263, 355, 374
AluI AGCT 6 cut(s) 19, 173, 188, 263, 355, 374
Alw26I GTCTC 2 cut(s) 89, 431
AlwI GGATC 2 cut(s) 401, 414
Ama87I CYCGRG 1 cut(s) 393
AoxI GGCC 2 cut(s) 22, 321
ApeKI GCWGC 4 cut(s) 173, 176, 188, 311
AsuHPI GGTGA 3 cut(s) 29, 317, 421
AvaI CYCGRG 1 cut(s) 393
BauI CACGAG 1 cut(s) 83
BbvI GCAGC 4 cut(s) 160, 175, 188, 298
BciT130I CCWGG 1 cut(s) 433
BciVI GTATCC 1 cut(s) 263
BcoDI GTCTC 2 cut(s) 89, 431
BfaI CTAG 2 cut(s) 170, 417
BfmI CTRYAG 1 cut(s) 174
BfuAI ACCTGC 1 cut(s) 23
BfuI GTATCC 1 cut(s) 263
BglI GCCNNNNNGGC 1 cut(s) 320
BisI GCNGC 5 cut(s) 25, 174, 177, 189, 312
BlsI GCNGC 5 cut(s) 26, 175, 178, 190, 313
Bme1390I CCNGG 1 cut(s) 433
BmeT110I CYCGRG 1 cut(s) 393
BmrFI CCNGG 1 cut(s) 433
BmsI GCATC 1 cut(s) 298
Bpu10I CCTNAGC 2 cut(s) 53, 356
Bsa29I ATCGAT 2 cut(s) 247, 339
BsaI GGTCTC 1 cut(s) 89
BsaJI CCNNGG 1 cut(s) 410
BsaXI ACNNNNNCTCC 2 cut(s) 198, 228
Bsc4I CCNNNNNNNGG 2 cut(s) 12, 54
BseBI CCWGG 1 cut(s) 433
BseCI ATCGAT 2 cut(s) 247, 339
BseDI CCNNGG 1 cut(s) 410
BseLI CCNNNNNNNGG 2 cut(s) 12, 54
BseMII CTCAG 1 cut(s) 67
BseRI GAGGAG 2 cut(s) 219, 369
BseX3I CGGCCG 1 cut(s) 22
BseXI GCAGC 4 cut(s) 160, 175, 188, 298
BseYI CCCAGC 2 cut(s) 28, 191
Bsh1285I CGRYCG 1 cut(s) 25
BshFI GGCC 2 cut(s) 24, 323
BshVI ATCGAT 2 cut(s) 247, 339
BsiEI CGRYCG 1 cut(s) 25
BsiHKCI CYCGRG 1 cut(s) 393
BslI CCNNNNNNNGG 2 cut(s) 12, 54
BsmAI GTCTC 2 cut(s) 89, 431
BsmBI CGTCTC 1 cut(s) 431
BsmI GAATGC 2 cut(s) 285, 294
BsnI GGCC 2 cut(s) 24, 323
Bso31I GGTCTC 1 cut(s) 89
BsoBI CYCGRG 1 cut(s) 393
Bsp143I GATC 2 cut(s) 406, 419
Bsp19I CCATGG 1 cut(s) 410
BspACI CCGC 1 cut(s) 25
BspANI GGCC 2 cut(s) 24, 323
BspCNI CTCAG 1 cut(s) 66
BspDI ATCGAT 2 cut(s) 247, 339
BspMAI CTGCAG 1 cut(s) 178
BspMI ACCTGC 1 cut(s) 23
BspPI GGATC 2 cut(s) 401, 414
BspQI GCTCTTC 1 cut(s) 178
BspTNI GGTCTC 1 cut(s) 89
BssECI CCNNGG 1 cut(s) 410
BssMI GATC 2 cut(s) 406, 419
BssSI CACGAG 1 cut(s) 83
BssT1I CCWWGG 1 cut(s) 410
Bst2BI CACGAG 1 cut(s) 83
Bst2UI CCWGG 1 cut(s) 433
Bst4CI ACNGT 2 cut(s) 41, 103
Bst6I CTCTTC 1 cut(s) 178
BstDEI CTNAG 2 cut(s) 53, 356
BstDSI CCRYGG 1 cut(s) 410
BstEII GGTNACC 1 cut(s) 35
BstKTI GATC 2 cut(s) 409, 422
BstMAI GTCTC 2 cut(s) 89, 431
BstMBI GATC 2 cut(s) 406, 419
BstMCI CGRYCG 1 cut(s) 25
BstMWI GCNNNNNNNGC 3 cut(s) 85, 185, 320
BstNI CCWGG 1 cut(s) 433
BstPI GGTNACC 1 cut(s) 35
BstSCI CCNGG 1 cut(s) 431
BstSFI CTRYAG 1 cut(s) 174
BstV1I GCAGC 4 cut(s) 160, 175, 188, 298
BstX2I RGATCY 1 cut(s) 419
BstYI RGATCY 1 cut(s) 419
BstZI CGGCCG 1 cut(s) 22
Bsu15I ATCGAT 2 cut(s) 247, 339
BsuI GTATCC 1 cut(s) 263
BsuRI GGCC 2 cut(s) 24, 323
BsuTUI ATCGAT 2 cut(s) 247, 339
BtgI CCRYGG 1 cut(s) 410
BtsIMutI CAGTG 1 cut(s) 99
BveI ACCTGC 1 cut(s) 23
ClaI ATCGAT 2 cut(s) 247, 339
Csp6I GTAC 2 cut(s) 215, 288
CviAII CATG 2 cut(s) 49, 411
CviQI GTAC 2 cut(s) 215, 288
DdeI CTNAG 2 cut(s) 53, 356
DpnI GATC 2 cut(s) 408, 421
DpnII GATC 2 cut(s) 406, 419
EaeI YGGCCR 1 cut(s) 22
EagI CGGCCG 1 cut(s) 22
Eam1104I CTCTTC 1 cut(s) 178
EarI CTCTTC 1 cut(s) 178
EclXI CGGCCG 1 cut(s) 22
Eco130I CCWWGG 1 cut(s) 410
Eco31I GGTCTC 1 cut(s) 89
Eco52I CGGCCG 1 cut(s) 22
Eco88I CYCGRG 1 cut(s) 393
Eco91I GGTNACC 1 cut(s) 35
EcoO65I GGTNACC 1 cut(s) 35
EcoRII CCWGG 1 cut(s) 431
EcoT14I CCWWGG 1 cut(s) 410
ErhI CCWWGG 1 cut(s) 410
Esp3I CGTCTC 1 cut(s) 431
FaeI CATG 2 cut(s) 52, 414
FaiI YATR 8 cut(s) 44, 50, 62, 143, 327, 412, 441, 481
FatI CATG 2 cut(s) 48, 410
Fnu4HI GCNGC 5 cut(s) 25, 174, 177, 189, 312
Fsp4HI GCNGC 5 cut(s) 25, 174, 177, 189, 312
FspBI CTAG 2 cut(s) 170, 417
GluI GCNGC 5 cut(s) 25, 174, 177, 189, 312
GsaI CCCAGC 2 cut(s) 32, 195
HaeIII GGCC 2 cut(s) 24, 323
Hin1II CATG 2 cut(s) 52, 414
HinfI GANTC 2 cut(s) 145, 470
HphI GGTGA 3 cut(s) 29, 317, 421
Hpy166II GTNNAC 1 cut(s) 167
Hpy188I TCNGA 3 cut(s) 155, 469, 475
Hpy188III TCNNGA 2 cut(s) 13, 55
Hpy8I GTNNAC 1 cut(s) 167
Hpy99I CGWCG 1 cut(s) 129
HpyCH4III ACNGT 2 cut(s) 41, 103
HpyCH4V TGCA 2 cut(s) 79, 176
HpyF10VI GCNNNNNNNGC 3 cut(s) 85, 185, 320
HpyF3I CTNAG 2 cut(s) 53, 356
Hsp92II CATG 2 cut(s) 52, 414
Kzo9I GATC 2 cut(s) 406, 419
LguI GCTCTTC 1 cut(s) 178
LmnI GCTCC 1 cut(s) 448
LpnPI CCDG 8 cut(s) 18, 40, 42, 177, 249, 384, 418, 445
Lsp1109I GCAGC 4 cut(s) 160, 175, 188, 298
LweI GCATC 1 cut(s) 298
MaeI CTAG 2 cut(s) 170, 417
MaeIII GTNAC 2 cut(s) 35, 103
MalI GATC 2 cut(s) 408, 421
MboI GATC 2 cut(s) 406, 419
MboII GAAGA 1 cut(s) 195
MfeI CAATTG 1 cut(s) 71
MflI RGATCY 1 cut(s) 419
MluCI AATT 3 cut(s) 71, 90, 236
MnlI CCTC 6 cut(s) 154, 197, 390, 396, 402, 448
MslI CAYNNNNRTG 1 cut(s) 278
MspR9I CCNGG 1 cut(s) 433
MunI CAATTG 1 cut(s) 71
Mva1269I GAATGC 2 cut(s) 285, 294
MvaI CCWGG 1 cut(s) 433
MwoI GCNNNNNNNGC 3 cut(s) 85, 185, 320
NcoI CCATGG 1 cut(s) 410
NdeII GATC 2 cut(s) 406, 419
NlaIII CATG 2 cut(s) 52, 414
NmuCI GTSAC 1 cut(s) 35
PaeR7I CTCGAG 1 cut(s) 393
PciSI GCTCTTC 1 cut(s) 178
PcsI WCGNNNNNNNCGW 1 cut(s) 336
PctI GAATGC 2 cut(s) 285, 294
PfeI GAWTC 2 cut(s) 145, 470
PkrI GCNGC 5 cut(s) 26, 175, 178, 190, 313
Psp6I CCWGG 1 cut(s) 431
PspEI GGTNACC 1 cut(s) 35
PspFI CCCAGC 2 cut(s) 28, 191
PspGI CCWGG 1 cut(s) 431
PspXI VCTCGAGB 1 cut(s) 393
PstI CTGCAG 1 cut(s) 178
PsuI RGATCY 1 cut(s) 419
RsaI GTAC 2 cut(s) 216, 289
RsaNI GTAC 2 cut(s) 215, 288
RseI CAYNNNNRTG 1 cut(s) 278
SapI GCTCTTC 1 cut(s) 178
SatI GCNGC 5 cut(s) 25, 174, 177, 189, 312
Sau3AI GATC 2 cut(s) 406, 419
ScrFI CCNGG 1 cut(s) 433
SfaNI GCATC 1 cut(s) 298
SfcI CTRYAG 1 cut(s) 174
Sfr274I CTCGAG 1 cut(s) 393
SlaI CTCGAG 1 cut(s) 393
SmiMI CAYNNNNRTG 1 cut(s) 278
SmlI CTYRAG 1 cut(s) 393
SmoI CTYRAG 1 cut(s) 393
Sse9I AATT 3 cut(s) 71, 90, 236
SsiI CCGC 1 cut(s) 25
SspMI CTAG 2 cut(s) 170, 417
StyD4I CCNGG 1 cut(s) 431
StyI CCWWGG 1 cut(s) 410
TaaI ACNGT 2 cut(s) 41, 103
TaqI TCGA 4 cut(s) 247, 330, 339, 394
TasI AATT 3 cut(s) 71, 90, 236
TatI WGTACW 1 cut(s) 214
TauI GCSGC 1 cut(s) 27
TfiI GAWTC 2 cut(s) 145, 470
TscAI CASTG 1 cut(s) 106
TseFI GTSAC 1 cut(s) 35
TseI GCWGC 4 cut(s) 173, 176, 188, 311
Tsp45I GTSAC 1 cut(s) 35
TspRI CASTG 1 cut(s) 106
XcmI CCANNNNNNNNNTGG 1 cut(s) 408
XhoI CTCGAG 1 cut(s) 393
XspI CTAG 2 cut(s) 170, 417
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.