Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008750.1

Orthogroup ID

OG0017319

Physical Location & Seq

Genomic Coordinates Forward (+)

69411 .. 71446

Gene Structure 2036 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008750.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

atgctgaggacgatggtgtcgcagttcgtgaagcacgagtgcattgaaaccgttgttgccaaggcaaaagaggttcgacatcaagctgatgatagagtggtacagcgtggaaaagatggttcactcgctgcagcgaggagttatgtagaaaataggaagaaactcttgctgccgaaagaacatgatctggagctggagctgggccttgtacctgagatgatagactcttcagattcaggagctcaagatcttcaccctcctccctctcaaggaaatgaggactctaaatttctcaatgagttggccacctttctggagctggaactgggccttgtacttgagatgaaagactcttcagattcaggaactcaagatcttcaccctcctccttcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0015934 GO:0022625 GO:0022626 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L17

Protein Analysis

131

Amino Acids

14.53

Weight (kDa)

4.95

Isoelectric Point (pI)

47.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017319)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g01560
prunus_persica	Prupe.6G158000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0104481 RchiOBHm_Chr7g0188221
rosa_laevigata	RLG00000018141 RLG00000018475 RLG00000018478
rosa_multiflora	Rmu_sc0005837.1_g000005 Rmu_sc0008750.1_g000015
rosa_roxburghii	Rroxscaffold_3G00249030 Rroxscaffold_7G00211070
rosa_samantha	Rh2CG043900 Rh7AG093500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	16
AcoI	YGGCCR	1 cut(s)	303
AcsI	RAATTY	1 cut(s)	287
AcuI	CTGAAG	2 cut(s)	213, 339
AfaI	GTAC	3 cut(s)	102, 210, 336
AfiI	CCNNNNNNNGG	1 cut(s)	269
AgsI	TTSAA	1 cut(s)	47
AluBI	AGCT	5 cut(s)	86, 193, 199, 242, 319
AluI	AGCT	5 cut(s)	86, 193, 199, 242, 319
Alw21I	GWGCWC	1 cut(s)	244
AoxI	GGCC	3 cut(s)	202, 303, 328
ApeKI	GCWGC	3 cut(s)	128, 131, 169
ApoI	RAATTY	1 cut(s)	287
AspS9I	GGNCC	2 cut(s)	202, 328
AsuHPI	GGTGA	2 cut(s)	245, 371
BalI	TGGCCA	1 cut(s)	305
BanII	GRGCYC	1 cut(s)	244
BauI	CACGAG	1 cut(s)	35
Bbv12I	GWGCWC	1 cut(s)	244
BbvCI	CCTCAGC	1 cut(s)	5
BbvI	GCAGC	3 cut(s)	115, 143, 156
BccI	CCATC	2 cut(s)	7, 110
BfmI	CTRYAG	1 cut(s)	129
BglII	AGATCT	2 cut(s)	247, 373
BisI	GCNGC	3 cut(s)	129, 132, 170
BlsI	GCNGC	3 cut(s)	130, 133, 171
BmgT120I	GGNCC	2 cut(s)	202, 328
BmrI	ACTGGG	1 cut(s)	335
BmuI	ACTGGG	1 cut(s)	335
BpmI	CTGGAG	3 cut(s)	209, 215, 335
Bpu10I	CCTNAGC	1 cut(s)	5
BpuEI	CTTGAG	4 cut(s)	228, 252, 354, 359
BsaJI	CCNNGG	1 cut(s)	60
Bsc4I	CCNNNNNNNGG	1 cut(s)	269
Bse1I	ACTGG	1 cut(s)	330
BseDI	CCNNGG	1 cut(s)	60
BseLI	CCNNNNNNNGG	1 cut(s)	269
BseMII	CTCAG	1 cut(s)	204
BseNI	ACTGG	1 cut(s)	330
BseRI	GAGGAG	3 cut(s)	151, 249, 375
BseXI	GCAGC	3 cut(s)	115, 143, 156
BseYI	CCCAGC	1 cut(s)	199
BshFI	GGCC	3 cut(s)	204, 305, 330
BsiHKAI	GWGCWC	1 cut(s)	244
BslI	CCNNNNNNNGG	1 cut(s)	269
BsnI	GGCC	3 cut(s)	204, 305, 330
Bsp1286I	GDGCHC	1 cut(s)	244
Bsp143I	GATC	3 cut(s)	184, 247, 373
BspANI	GGCC	3 cut(s)	204, 305, 330
BspCNI	CTCAG	1 cut(s)	205
BspMAI	CTGCAG	1 cut(s)	133
BsrI	ACTGG	1 cut(s)	330
BssECI	CCNNGG	1 cut(s)	60
BssMI	GATC	3 cut(s)	184, 247, 373
BssSI	CACGAG	1 cut(s)	35
BssT1I	CCWWGG	1 cut(s)	60
Bst2BI	CACGAG	1 cut(s)	35
Bst4CI	ACNGT	1 cut(s)	52
Bst6I	CTCTTC	2 cut(s)	232, 358
BstDEI	CTNAG	2 cut(s)	5, 213
BstKTI	GATC	3 cut(s)	187, 250, 376
BstMBI	GATC	3 cut(s)	184, 247, 373
BstSFI	CTRYAG	1 cut(s)	129
BstV1I	GCAGC	3 cut(s)	115, 143, 156
BstX2I	RGATCY	2 cut(s)	247, 373
BstXI	CCANNNNNNTGG	1 cut(s)	313
BstYI	RGATCY	2 cut(s)	247, 373
BsuRI	GGCC	3 cut(s)	204, 305, 330
Cfr13I	GGNCC	2 cut(s)	202, 328
Csp6I	GTAC	3 cut(s)	101, 209, 335
CviAII	CATG	1 cut(s)	182
CviJI	RGCY	8 cut(s)	86, 193, 199, 204, 242, 305, 319, 330
CviKI_1	RGCY	8 cut(s)	86, 193, 199, 204, 242, 305, 319, 330
CviQI	GTAC	3 cut(s)	101, 209, 335
DdeI	CTNAG	2 cut(s)	5, 213
DpnI	GATC	3 cut(s)	186, 249, 375
DpnII	GATC	3 cut(s)	184, 247, 373
DrdI	GACNNNNNNGTC	1 cut(s)	16
DseDI	GACNNNNNNGTC	1 cut(s)	16
EaeI	YGGCCR	1 cut(s)	303
Eam1104I	CTCTTC	2 cut(s)	232, 358
EarI	CTCTTC	2 cut(s)	232, 358
Ecl136II	GAGCTC	1 cut(s)	242
Eco130I	CCWWGG	1 cut(s)	60
Eco24I	GRGCYC	1 cut(s)	244
Eco53kI	GAGCTC	1 cut(s)	242
Eco57I	CTGAAG	2 cut(s)	213, 339
EcoICRI	GAGCTC	1 cut(s)	242
EcoT14I	CCWWGG	1 cut(s)	60
EcoT38I	GRGCYC	1 cut(s)	244
ErhI	CCWWGG	1 cut(s)	60
FaeI	CATG	1 cut(s)	185
FaiI	YATR	2 cut(s)	144, 183
FalI	AAGNNNNNCTT	2 cut(s)	149, 181
FatI	CATG	1 cut(s)	181
Fnu4HI	GCNGC	3 cut(s)	129, 132, 170
FriOI	GRGCYC	1 cut(s)	244
Fsp4HI	GCNGC	3 cut(s)	129, 132, 170
GluI	GCNGC	3 cut(s)	129, 132, 170
GsaI	CCCAGC	1 cut(s)	203
GsuI	CTGGAG	3 cut(s)	209, 215, 335
HaeIII	GGCC	3 cut(s)	204, 305, 330
Hin1II	CATG	1 cut(s)	185
HinfI	GANTC	5 cut(s)	224, 233, 281, 350, 359
HphI	GGTGA	2 cut(s)	245, 371
Hpy166II	GTNNAC	1 cut(s)	122
Hpy188I	TCNGA	2 cut(s)	232, 358
Hpy188III	TCNNGA	7 cut(s)	28, 188, 237, 245, 314, 363, 371
Hpy8I	GTNNAC	1 cut(s)	122
HpyCH4III	ACNGT	1 cut(s)	52
HpyCH4V	TGCA	2 cut(s)	42, 131
HpyF3I	CTNAG	2 cut(s)	5, 213
Hsp92II	CATG	1 cut(s)	185
Kzo9I	GATC	3 cut(s)	184, 247, 373
LmnI	GCTCC	4 cut(s)	190, 196, 239, 316
LpnPI	CCDG	9 cut(s)	173, 179, 185, 222, 225, 299, 305, 311, 348
Lsp1109I	GCAGC	3 cut(s)	115, 143, 156
MalI	GATC	3 cut(s)	186, 249, 375
MboI	GATC	3 cut(s)	184, 247, 373
MboII	GAAGA	5 cut(s)	169, 219, 242, 345, 368
MflI	RGATCY	2 cut(s)	247, 373
MhlI	GDGCHC	1 cut(s)	244
MlsI	TGGCCA	1 cut(s)	305
MluCI	AATT	1 cut(s)	287
MluNI	TGGCCA	1 cut(s)	305
MlyI	GAGTC	3 cut(s)	218, 275, 344
MnlI	CCTC	8 cut(s)	64, 129, 267, 270, 271, 274, 393, 396
Mox20I	TGGCCA	1 cut(s)	305
MscI	TGGCCA	1 cut(s)	305
MseI	TTAA	1 cut(s)	394
Msp20I	TGGCCA	1 cut(s)	305
NdeII	GATC	3 cut(s)	184, 247, 373
NlaIII	CATG	1 cut(s)	185
PcsI	WCGNNNNNNNCGW	1 cut(s)	33
PfeI	GAWTC	2 cut(s)	233, 359
PkrI	GCNGC	3 cut(s)	130, 133, 171
PleI	GAGTC	3 cut(s)	218, 275, 344
PpsI	GAGTC	3 cut(s)	218, 275, 344
Psp124BI	GAGCTC	1 cut(s)	244
PspFI	CCCAGC	1 cut(s)	199
PspPI	GGNCC	2 cut(s)	202, 328
PstI	CTGCAG	1 cut(s)	133
PsuI	RGATCY	2 cut(s)	247, 373
RsaI	GTAC	3 cut(s)	102, 210, 336
RsaNI	GTAC	3 cut(s)	101, 209, 335
SacI	GAGCTC	1 cut(s)	244
SaqAI	TTAA	1 cut(s)	394
SatI	GCNGC	3 cut(s)	129, 132, 170
Sau3AI	GATC	3 cut(s)	184, 247, 373
Sau96I	GGNCC	2 cut(s)	202, 328
SchI	GAGTC	3 cut(s)	218, 275, 344
SduI	GDGCHC	1 cut(s)	244
SetI	ASST	8 cut(s)	75, 88, 195, 201, 214, 244, 311, 321
SfcI	CTRYAG	1 cut(s)	129
SmlI	CTYRAG	4 cut(s)	243, 267, 338, 369
SmoI	CTYRAG	4 cut(s)	243, 267, 338, 369
Sse9I	AATT	1 cut(s)	287
SstI	GAGCTC	1 cut(s)	244
StyI	CCWWGG	1 cut(s)	60
TaaI	ACNGT	1 cut(s)	52
TaqI	TCGA	1 cut(s)	76
TasI	AATT	1 cut(s)	287
TatI	WGTACW	1 cut(s)	334
TfiI	GAWTC	2 cut(s)	233, 359
Tru1I	TTAA	1 cut(s)	394
Tru9I	TTAA	1 cut(s)	394
TseI	GCWGC	3 cut(s)	128, 131, 169
TspDTI	ATGAA	1 cut(s)	359
XapI	RAATTY	1 cut(s)	287

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.