Rh7AG093500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0017319
Physical Location & Seq
Reverse (-)
7165980 .. 7166285
306 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG093500.1

Sequence Viewer

Length: 306 bp
ATGATAGACTATTCAGATTCAGGAGCTCAAGATCTTCACCCTCCTCCTTCTCAAGGAAATGAGGACTCTGAATCTCTCAATGAGTTGGCCACCTTTCTGGAGCTAGAGCTGGGCCTTGTACCTGAGATGAAAGACTCTTCAGATTCAGGAACTCAAGATCTTCACCCTCCTCCTTCTCAAGAAAATGAGGACTCTGCATTTGTCAATGAGTTGGCCACCTTTCATACCCAAGTTACTGTTGCGGTCACCTTTCATACCCACGTTACTGTTGCCATCAAATTTCAGAGCATTTCGACCATGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

101

Amino Acids

11.02

Weight (kDa)

4.12

Isoelectric Point (pI)

51.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 242
AcoI YGGCCR 2 cut(s) 87, 213
AcsI RAATTY 1 cut(s) 278
AcuI CTGAAG 1 cut(s) 123
AfaI GTAC 1 cut(s) 120
AfiI CCNNNNNNNGG 1 cut(s) 53
AluBI AGCT 3 cut(s) 26, 103, 109
AluI AGCT 3 cut(s) 26, 103, 109
Alw21I GWGCWC 1 cut(s) 28
AoxI GGCC 3 cut(s) 87, 112, 213
ApoI RAATTY 1 cut(s) 278
ArsI GACNNNNNNTTYG 2 cut(s) 182, 214
AspS9I GGNCC 1 cut(s) 112
AsuHPI GGTGA 3 cut(s) 29, 155, 238
BalI TGGCCA 2 cut(s) 89, 215
BanII GRGCYC 1 cut(s) 28
Bbv12I GWGCWC 1 cut(s) 28
BccI CCATC 1 cut(s) 281
BfaI CTAG 1 cut(s) 104
BglII AGATCT 2 cut(s) 31, 157
BmgT120I GGNCC 1 cut(s) 112
BpmI CTGGAG 1 cut(s) 119
BpuEI CTTGAG 4 cut(s) 12, 36, 138, 162
Bsc4I CCNNNNNNNGG 1 cut(s) 53
BseLI CCNNNNNNNGG 1 cut(s) 53
BseMII CTCAG 1 cut(s) 114
BseRI GAGGAG 2 cut(s) 33, 159
BseYI CCCAGC 1 cut(s) 109
BshFI GGCC 3 cut(s) 89, 114, 215
BsiHKAI GWGCWC 1 cut(s) 28
BslI CCNNNNNNNGG 1 cut(s) 53
BsnI GGCC 3 cut(s) 89, 114, 215
Bsp1286I GDGCHC 1 cut(s) 28
Bsp143I GATC 2 cut(s) 31, 157
BspACI CCGC 1 cut(s) 242
BspANI GGCC 3 cut(s) 89, 114, 215
BspCNI CTCAG 1 cut(s) 115
BssMI GATC 2 cut(s) 31, 157
Bst4CI ACNGT 2 cut(s) 238, 268
Bst6I CTCTTC 1 cut(s) 142
BstDEI CTNAG 1 cut(s) 123
BstEII GGTNACC 1 cut(s) 244
BstENI CCTNNNNNAGG 1 cut(s) 51
BstKTI GATC 2 cut(s) 34, 160
BstMBI GATC 2 cut(s) 31, 157
BstPI GGTNACC 1 cut(s) 244
BstX2I RGATCY 2 cut(s) 31, 157
BstXI CCANNNNNNTGG 1 cut(s) 97
BstYI RGATCY 2 cut(s) 31, 157
BsuRI GGCC 3 cut(s) 89, 114, 215
Cfr13I GGNCC 1 cut(s) 112
Csp6I GTAC 1 cut(s) 119
CviAII CATG 1 cut(s) 298
CviJI RGCY 6 cut(s) 26, 89, 103, 109, 114, 215
CviKI_1 RGCY 6 cut(s) 26, 89, 103, 109, 114, 215
CviQI GTAC 1 cut(s) 119
DdeI CTNAG 1 cut(s) 123
DpnI GATC 2 cut(s) 33, 159
DpnII GATC 2 cut(s) 31, 157
EaeI YGGCCR 2 cut(s) 87, 213
Eam1104I CTCTTC 1 cut(s) 142
EarI CTCTTC 1 cut(s) 142
Ecl136II GAGCTC 1 cut(s) 26
Eco24I GRGCYC 1 cut(s) 28
Eco53kI GAGCTC 1 cut(s) 26
Eco57I CTGAAG 1 cut(s) 123
Eco91I GGTNACC 1 cut(s) 244
EcoICRI GAGCTC 1 cut(s) 26
EcoNI CCTNNNNNAGG 1 cut(s) 51
EcoO65I GGTNACC 1 cut(s) 244
EcoT38I GRGCYC 1 cut(s) 28
FaeI CATG 1 cut(s) 301
FaiI YATR 3 cut(s) 225, 255, 299
FatI CATG 1 cut(s) 297
FriOI GRGCYC 1 cut(s) 28
FspBI CTAG 1 cut(s) 104
GsaI CCCAGC 1 cut(s) 113
GsuI CTGGAG 1 cut(s) 119
HaeIII GGCC 3 cut(s) 89, 114, 215
Hin1II CATG 1 cut(s) 301
HinfI GANTC 6 cut(s) 17, 65, 71, 134, 143, 191
HphI GGTGA 3 cut(s) 29, 155, 238
Hpy188I TCNGA 4 cut(s) 16, 70, 142, 285
Hpy188III TCNNGA 6 cut(s) 21, 29, 98, 147, 155, 179
HpyAV CCTTC 2 cut(s) 57, 183
HpyCH4III ACNGT 2 cut(s) 238, 268
HpyCH4IV ACGT 1 cut(s) 261
HpyCH4V TGCA 1 cut(s) 197
HpyF3I CTNAG 1 cut(s) 123
HpySE526I ACGT 1 cut(s) 261
Hsp92II CATG 1 cut(s) 301
Kzo9I GATC 2 cut(s) 31, 157
LmnI GCTCC 2 cut(s) 23, 100
LpnPI CCDG 5 cut(s) 6, 83, 95, 132, 135
MaeI CTAG 1 cut(s) 104
MaeII ACGT 1 cut(s) 261
MaeIII GTNAC 3 cut(s) 232, 244, 262
MalI GATC 2 cut(s) 33, 159
MboI GATC 2 cut(s) 31, 157
MboII GAAGA 3 cut(s) 26, 129, 152
MflI RGATCY 2 cut(s) 31, 157
MhlI GDGCHC 1 cut(s) 28
MlsI TGGCCA 2 cut(s) 89, 215
MluCI AATT 2 cut(s) 278, 301
MluNI TGGCCA 2 cut(s) 89, 215
MlyI GAGTC 3 cut(s) 59, 128, 185
MnlI CCTC 6 cut(s) 51, 54, 55, 177, 180, 181
Mox20I TGGCCA 2 cut(s) 89, 215
MscI TGGCCA 2 cut(s) 89, 215
Msp20I TGGCCA 2 cut(s) 89, 215
NdeII GATC 2 cut(s) 31, 157
NlaIII CATG 1 cut(s) 301
NmuCI GTSAC 1 cut(s) 244
PfeI GAWTC 3 cut(s) 17, 71, 143
PleI GAGTC 3 cut(s) 59, 128, 185
PpsI GAGTC 3 cut(s) 59, 128, 185
Psp124BI GAGCTC 1 cut(s) 28
PspEI GGTNACC 1 cut(s) 244
PspFI CCCAGC 1 cut(s) 109
PspPI GGNCC 1 cut(s) 112
PsuI RGATCY 2 cut(s) 31, 157
RsaI GTAC 1 cut(s) 120
RsaNI GTAC 1 cut(s) 119
SacI GAGCTC 1 cut(s) 28
Sau3AI GATC 2 cut(s) 31, 157
Sau96I GGNCC 1 cut(s) 112
SchI GAGTC 3 cut(s) 59, 128, 185
SduI GDGCHC 1 cut(s) 28
SetI ASST 8 cut(s) 28, 95, 105, 111, 124, 221, 251, 264
SmlI CTYRAG 4 cut(s) 27, 51, 153, 177
SmoI CTYRAG 4 cut(s) 27, 51, 153, 177
Sse9I AATT 2 cut(s) 278, 301
SsiI CCGC 1 cut(s) 242
SspMI CTAG 1 cut(s) 104
SstI GAGCTC 1 cut(s) 28
TaaI ACNGT 2 cut(s) 238, 268
TaiI ACGT 1 cut(s) 264
TaqI TCGA 1 cut(s) 293
TasI AATT 2 cut(s) 278, 301
TfiI GAWTC 3 cut(s) 17, 71, 143
TseFI GTSAC 1 cut(s) 244
Tsp45I GTSAC 1 cut(s) 244
TspDTI ATGAA 3 cut(s) 143, 212, 242
XagI CCTNNNNNAGG 1 cut(s) 51
XapI RAATTY 1 cut(s) 278
XspI CTAG 1 cut(s) 104
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.