Rroxscaffold_7G00211070

Belongs to the bacterial ribosomal protein bL17 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0017319
Physical Location & Seq
Reverse (-)
61487016 .. 61487351
336 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00211070.1

Sequence Viewer

Length: 336 bp
ATGACGAAGCTAAGGAAGCTTAACCGAACTGCGGCTCATCGCAGATCTATGCTGAGGACGATGGTGTCGCAGTTCATGAAGCACGAGTGCATTGAAATCGCTGTTGCCAAGGCAAAAGAGGTTCGACATCAGGCTGATAGAGTGGTGCAGCGTGGAAAAGATAGTTCACTCGCTGCAACGAGGAGTTATGCAGAAAATAGGAAGAAACTCTTGGTTTCATTTAAATATGTATCTACATTTTTGTTTGTGCTATTGTTTAATGTTTGTCATAGAAGGTTTGATCTTCTTCTTCCATACCGTAATTTTACATCAATGATAGTCCTCAAGCATGTTTGA

Protein Analysis

111

Amino Acids

13.1

Weight (kDa)

11.0

Isoelectric Point (pI)

45.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L17 PF01196 17 - 66 1.1e-09 Ribosomal protein L17
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 64
AciI CCGC 1 cut(s) 32
AfiI CCNNNNNNNGG 1 cut(s) 31
AgsI TTSAA 1 cut(s) 95
AjuI GAANNNNNNNTTGG 2 cut(s) 194, 226
AluBI AGCT 2 cut(s) 10, 19
AluI AGCT 2 cut(s) 10, 19
ApeKI GCWGC 2 cut(s) 148, 173
BauI CACGAG 1 cut(s) 83
BbvCI CCTCAGC 1 cut(s) 53
BbvI GCAGC 2 cut(s) 160, 160
BccI CCATC 1 cut(s) 55
BcgI CGANNNNNNTGC 2 cut(s) 79, 113
BglII AGATCT 1 cut(s) 44
BisI GCNGC 3 cut(s) 33, 149, 174
BlsI GCNGC 3 cut(s) 34, 150, 175
Bpu10I CCTNAGC 2 cut(s) 11, 53
BpuEI CTTGAG 1 cut(s) 308
BsaJI CCNNGG 1 cut(s) 108
Bsc4I CCNNNNNNNGG 1 cut(s) 31
BseDI CCNNGG 1 cut(s) 108
BseLI CCNNNNNNNGG 1 cut(s) 31
BseMII CTCAG 1 cut(s) 44
BseRI GAGGAG 1 cut(s) 196
BseXI GCAGC 2 cut(s) 160, 160
BsgI GTGCAG 1 cut(s) 167
BslI CCNNNNNNNGG 1 cut(s) 31
Bsp143I GATC 2 cut(s) 44, 280
BspACI CCGC 1 cut(s) 32
BspCNI CTCAG 1 cut(s) 45
BspHI TCATGA 1 cut(s) 75
BssECI CCNNGG 1 cut(s) 108
BssMI GATC 2 cut(s) 44, 280
BssSI CACGAG 1 cut(s) 83
BssT1I CCWWGG 1 cut(s) 108
Bst2BI CACGAG 1 cut(s) 83
Bst4CI ACNGT 1 cut(s) 299
BstDEI CTNAG 2 cut(s) 11, 53
BstKTI GATC 2 cut(s) 47, 283
BstMBI GATC 2 cut(s) 44, 280
BstMWI GCNNNNNNNGC 1 cut(s) 16
BstNSI RCATGY 1 cut(s) 332
BstV1I GCAGC 2 cut(s) 160, 160
BstX2I RGATCY 1 cut(s) 44
BstYI RGATCY 1 cut(s) 44
BtgZI GCGATG 1 cut(s) 23
CciI TCATGA 1 cut(s) 75
CviAII CATG 2 cut(s) 76, 329
CviJI RGCY 4 cut(s) 10, 19, 35, 134
CviKI_1 RGCY 4 cut(s) 10, 19, 35, 134
DdeI CTNAG 2 cut(s) 11, 53
DpnI GATC 2 cut(s) 46, 282
DpnII GATC 2 cut(s) 44, 280
DraI TTTAAA 1 cut(s) 223
DrdI GACNNNNNNGTC 1 cut(s) 64
DseDI GACNNNNNNGTC 1 cut(s) 64
Eco130I CCWWGG 1 cut(s) 108
EcoT14I CCWWGG 1 cut(s) 108
ErhI CCWWGG 1 cut(s) 108
FaeI CATG 2 cut(s) 79, 332
FaiI YATR 7 cut(s) 50, 77, 189, 228, 270, 295, 330
FalI AAGNNNNNCTT 2 cut(s) 194, 226
FatI CATG 2 cut(s) 75, 328
Fnu4HI GCNGC 3 cut(s) 33, 149, 174
Fsp4HI GCNGC 3 cut(s) 33, 149, 174
GluI GCNGC 3 cut(s) 33, 149, 174
Hin1II CATG 2 cut(s) 79, 332
HindIII AAGCTT 1 cut(s) 17
Hpy166II GTNNAC 1 cut(s) 167
Hpy188III TCNNGA 1 cut(s) 76
Hpy8I GTNNAC 1 cut(s) 167
HpyAV CCTTC 1 cut(s) 267
HpyCH4III ACNGT 1 cut(s) 299
HpyCH4V TGCA 4 cut(s) 90, 148, 176, 191
HpyF10VI GCNNNNNNNGC 1 cut(s) 16
HpyF3I CTNAG 2 cut(s) 11, 53
Hsp92II CATG 2 cut(s) 79, 332
Kzo9I GATC 2 cut(s) 44, 280
LpnPI CCDG 1 cut(s) 116
Lsp1109I GCAGC 2 cut(s) 160, 160
MalI GATC 2 cut(s) 46, 282
MboI GATC 2 cut(s) 44, 280
MboII GAAGA 4 cut(s) 214, 275, 278, 281
MflI RGATCY 1 cut(s) 44
MluCI AATT 1 cut(s) 301
MnlI CCTC 4 cut(s) 48, 112, 174, 332
MseI TTAA 3 cut(s) 21, 222, 258
MwoI GCNNNNNNNGC 1 cut(s) 16
NdeII GATC 2 cut(s) 44, 280
NlaIII CATG 2 cut(s) 79, 332
NspI RCATGY 1 cut(s) 332
PagI TCATGA 1 cut(s) 75
PkrI GCNGC 3 cut(s) 34, 150, 175
PsuI RGATCY 1 cut(s) 44
SaqAI TTAA 3 cut(s) 21, 222, 258
SatI GCNGC 3 cut(s) 33, 149, 174
Sau3AI GATC 2 cut(s) 44, 280
SetI ASST 4 cut(s) 12, 21, 123, 278
SgeI CNNG 9 cut(s) 88, 95, 97, 121, 143, 164, 182, 192, 223
SmiI ATTTAAAT 1 cut(s) 223
SmlI CTYRAG 1 cut(s) 323
SmoI CTYRAG 1 cut(s) 323
Sse9I AATT 1 cut(s) 301
SsiI CCGC 1 cut(s) 32
StyI CCWWGG 1 cut(s) 108
SwaI ATTTAAAT 1 cut(s) 223
TaaI ACNGT 1 cut(s) 299
TaqI TCGA 1 cut(s) 124
TasI AATT 1 cut(s) 301
TauI GCSGC 1 cut(s) 35
Tru1I TTAA 3 cut(s) 21, 222, 258
Tru9I TTAA 3 cut(s) 21, 222, 258
TseI GCWGC 2 cut(s) 148, 173
TspDTI ATGAA 3 cut(s) 64, 92, 207
XceI RCATGY 1 cut(s) 332
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.