Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0017319

Physical Location & Seq

Genomic Coordinates Forward (+)

25858742 .. 25859737

Gene Structure 996 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000018141

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGACGAAGTTAAGGAAGCTGAACCGAACTGCGGCTTATCACAGATCTATGCTGAGGACGATGGTGTCGCAGTTCGTGAAGCATGAGTGCATTGAAACCGCTGTTGCCAAGGCAAAAGAGGTTCGACATCAGGCTGATAGAGTGGTGCAGCGTGGAAAAGATGGTTCACTCGCGGCAGCGAGGAGTTATGTAGAAAATAGGAAGAAACTCTTGGCTGATGTTGATGGGAATGGATTTCTGGATTATGGAGAGTTTGCATCAGTCATAATTCACTTGCAGAAGTGGAGAATGATGAACATCTCATTAGAGCATTCATATTTGTTGACAAGGTTTGAAGTGTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0015934 GO:0022625 GO:0022626 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L17

Protein Analysis

115

Amino Acids

13.24

Weight (kDa)

9.88

Isoelectric Point (pI)

27.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L17	PF01196	17 - 65	4.9e-11	Ribosomal protein L17

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0017319)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g01560
prunus_persica	Prupe.6G158000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0104481 RchiOBHm_Chr7g0188221
rosa_laevigata	RLG00000018141 RLG00000018475 RLG00000018478
rosa_multiflora	Rmu_sc0005837.1_g000005 Rmu_sc0008750.1_g000015
rosa_roxburghii	Rroxscaffold_3G00249030 Rroxscaffold_7G00211070
rosa_samantha	Rh2CG043900 Rh7AG093500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	64
AccII	CGCG	1 cut(s)	173
AciI	CCGC	3 cut(s)	32, 99, 173
AfiI	CCNNNNNNNGG	1 cut(s)	31
AgsI	TTSAA	2 cut(s)	95, 335
AjuI	GAANNNNNNNTTGG	2 cut(s)	194, 226
AluBI	AGCT	1 cut(s)	19
AluI	AGCT	1 cut(s)	19
ApeKI	GCWGC	2 cut(s)	148, 176
BbvCI	CCTCAGC	1 cut(s)	53
BbvI	GCAGC	2 cut(s)	160, 188
BccI	CCATC	3 cut(s)	55, 155, 218
BglII	AGATCT	1 cut(s)	44
BisI	GCNGC	4 cut(s)	33, 149, 174, 177
BlsI	GCNGC	4 cut(s)	34, 150, 175, 178
BmsI	GCATC	1 cut(s)	266
Bpu10I	CCTNAGC	1 cut(s)	53
BsaBI	GATNNNNATC	1 cut(s)	296
BsaJI	CCNNGG	1 cut(s)	108
Bsc4I	CCNNNNNNNGG	1 cut(s)	31
Bse8I	GATNNNNATC	1 cut(s)	296
BseDI	CCNNGG	1 cut(s)	108
BseJI	GATNNNNATC	1 cut(s)	296
BseLI	CCNNNNNNNGG	1 cut(s)	31
BseMII	CTCAG	1 cut(s)	44
BseRI	GAGGAG	1 cut(s)	196
BseXI	GCAGC	2 cut(s)	160, 188
BsgI	GTGCAG	1 cut(s)	167
Bsh1236I	CGCG	1 cut(s)	173
BslI	CCNNNNNNNGG	1 cut(s)	31
BsmI	GAATGC	1 cut(s)	310
Bsp143I	GATC	1 cut(s)	44
BspACI	CCGC	3 cut(s)	32, 99, 173
BspCNI	CTCAG	1 cut(s)	45
BspFNI	CGCG	1 cut(s)	173
BssECI	CCNNGG	1 cut(s)	108
BssMI	GATC	1 cut(s)	44
BssT1I	CCWWGG	1 cut(s)	108
BstDEI	CTNAG	1 cut(s)	53
BstFNI	CGCG	1 cut(s)	173
BstKTI	GATC	1 cut(s)	47
BstMBI	GATC	1 cut(s)	44
BstUI	CGCG	1 cut(s)	173
BstV1I	GCAGC	2 cut(s)	160, 188
BstX2I	RGATCY	1 cut(s)	44
BstYI	RGATCY	1 cut(s)	44
CviAII	CATG	1 cut(s)	83
CviJI	RGCY	4 cut(s)	19, 35, 134, 215
CviKI_1	RGCY	4 cut(s)	19, 35, 134, 215
DdeI	CTNAG	1 cut(s)	53
DpnI	GATC	1 cut(s)	46
DpnII	GATC	1 cut(s)	44
DrdI	GACNNNNNNGTC	1 cut(s)	64
DseDI	GACNNNNNNGTC	1 cut(s)	64
Eco130I	CCWWGG	1 cut(s)	108
EcoT14I	CCWWGG	1 cut(s)	108
ErhI	CCWWGG	1 cut(s)	108
FaeI	CATG	1 cut(s)	86
FaiI	YATR	6 cut(s)	50, 84, 189, 246, 266, 316
FalI	AAGNNNNNCTT	2 cut(s)	194, 226
FatI	CATG	1 cut(s)	82
Fnu4HI	GCNGC	4 cut(s)	33, 149, 174, 177
Fsp4HI	GCNGC	4 cut(s)	33, 149, 174, 177
GluI	GCNGC	4 cut(s)	33, 149, 174, 177
Hin1II	CATG	1 cut(s)	86
HincII	GTYRAC	1 cut(s)	324
HindII	GTYRAC	1 cut(s)	324
Hpy166II	GTNNAC	2 cut(s)	167, 324
Hpy188III	TCNNGA	2 cut(s)	76, 239
Hpy8I	GTNNAC	2 cut(s)	167, 324
HpyCH4V	TGCA	4 cut(s)	90, 148, 257, 277
HpyF3I	CTNAG	1 cut(s)	53
Hsp92II	CATG	1 cut(s)	86
Kzo9I	GATC	1 cut(s)	44
LpnPI	CCDG	2 cut(s)	116, 224
Lsp1109I	GCAGC	2 cut(s)	160, 188
LweI	GCATC	1 cut(s)	266
MalI	GATC	1 cut(s)	46
MboI	GATC	1 cut(s)	44
MboII	GAAGA	1 cut(s)	214
MflI	RGATCY	1 cut(s)	44
MluCI	AATT	1 cut(s)	267
MnlI	CCTC	3 cut(s)	48, 112, 174
MseI	TTAA	2 cut(s)	11, 343
MspA1I	CMGCKG	1 cut(s)	101
Mva1269I	GAATGC	1 cut(s)	310
MvnI	CGCG	1 cut(s)	173
NdeII	GATC	1 cut(s)	44
NlaIII	CATG	1 cut(s)	86
PctI	GAATGC	1 cut(s)	310
PkrI	GCNGC	4 cut(s)	34, 150, 175, 178
PsuI	RGATCY	1 cut(s)	44
SaqAI	TTAA	2 cut(s)	11, 343
SatI	GCNGC	4 cut(s)	33, 149, 174, 177
Sau3AI	GATC	1 cut(s)	44
SetI	ASST	3 cut(s)	21, 123, 332
SfaNI	GCATC	1 cut(s)	266
Sse9I	AATT	1 cut(s)	267
SsiI	CCGC	3 cut(s)	32, 99, 173
StyI	CCWWGG	1 cut(s)	108
TaqI	TCGA	1 cut(s)	124
TasI	AATT	1 cut(s)	267
TauI	GCSGC	2 cut(s)	35, 176
Tru1I	TTAA	2 cut(s)	11, 343
Tru9I	TTAA	2 cut(s)	11, 343
TseI	GCWGC	2 cut(s)	148, 176
TspDTI	ATGAA	2 cut(s)	303, 308

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.