Rh2CG043900

Belongs to the bacterial ribosomal protein bL17 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0017319
Physical Location & Seq
Forward (+)
3480559 .. 3483935
3377 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG043900.1

Sequence Viewer

Length: 336 bp
ATGATGAAGTTAAGGAAGCTGAACCGAACTGCGGCTCATCGCAGATCTATGCTGAGGACAATGGTGTCGCAGTTCGTGAAGCACGAGTGCATTGAAACCGCTGTTGCCAAGGCAAAAGAGGTTCGACATCAGGCTGATAGAGTGGTGCAGCGTGGAAAAGATGGTTCACTCGTTGCAGCGAGGAGTTATGTAGAAAATAGGAAGAAACTCTTGGTTTCATTTAAATATGTATCTACATTTTTGTTTGTGCTGTTGTTTAATGTTTGTCATAGAAGGTCTGATCTTCTTCTTCCATACCATAATTTTACATCAATGATAGTCCTCAAGCATGTTTGA

Protein Analysis

111

Amino Acids

13.0

Weight (kDa)

10.82

Isoelectric Point (pI)

44.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L17 PF01196 17 - 65 1e-10 Ribosomal protein L17
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 64
AciI CCGC 2 cut(s) 32, 99
AfiI CCNNNNNNNGG 1 cut(s) 31
AgsI TTSAA 1 cut(s) 95
AjuI GAANNNNNNNTTGG 2 cut(s) 194, 226
AluBI AGCT 1 cut(s) 19
AluI AGCT 1 cut(s) 19
ApeKI GCWGC 2 cut(s) 148, 176
BauI CACGAG 1 cut(s) 83
BbvCI CCTCAGC 1 cut(s) 53
BbvI GCAGC 2 cut(s) 160, 188
BccI CCATC 1 cut(s) 155
BglII AGATCT 1 cut(s) 44
BisI GCNGC 3 cut(s) 33, 149, 177
BlsI GCNGC 3 cut(s) 34, 150, 178
Bpu10I CCTNAGC 1 cut(s) 53
BpuEI CTTGAG 1 cut(s) 308
BsaJI CCNNGG 1 cut(s) 108
Bsc4I CCNNNNNNNGG 1 cut(s) 31
BseDI CCNNGG 1 cut(s) 108
BseLI CCNNNNNNNGG 1 cut(s) 31
BseMII CTCAG 1 cut(s) 44
BseRI GAGGAG 1 cut(s) 196
BseXI GCAGC 2 cut(s) 160, 188
BsgI GTGCAG 1 cut(s) 167
BslI CCNNNNNNNGG 1 cut(s) 31
Bsp143I GATC 2 cut(s) 44, 280
BspACI CCGC 2 cut(s) 32, 99
BspCNI CTCAG 1 cut(s) 45
BssECI CCNNGG 1 cut(s) 108
BssMI GATC 2 cut(s) 44, 280
BssSI CACGAG 1 cut(s) 83
BssT1I CCWWGG 1 cut(s) 108
Bst2BI CACGAG 1 cut(s) 83
BstDEI CTNAG 1 cut(s) 53
BstKTI GATC 2 cut(s) 47, 283
BstMBI GATC 2 cut(s) 44, 280
BstNSI RCATGY 1 cut(s) 332
BstV1I GCAGC 2 cut(s) 160, 188
BstX2I RGATCY 1 cut(s) 44
BstYI RGATCY 1 cut(s) 44
BtgZI GCGATG 1 cut(s) 23
CviAII CATG 1 cut(s) 329
CviJI RGCY 3 cut(s) 19, 35, 134
CviKI_1 RGCY 3 cut(s) 19, 35, 134
DdeI CTNAG 1 cut(s) 53
DpnI GATC 2 cut(s) 46, 282
DpnII GATC 2 cut(s) 44, 280
DraI TTTAAA 1 cut(s) 223
DrdI GACNNNNNNGTC 1 cut(s) 64
DseDI GACNNNNNNGTC 1 cut(s) 64
Eco130I CCWWGG 1 cut(s) 108
EcoT14I CCWWGG 1 cut(s) 108
ErhI CCWWGG 1 cut(s) 108
FaeI CATG 1 cut(s) 332
FaiI YATR 7 cut(s) 50, 189, 228, 270, 295, 300, 330
FalI AAGNNNNNCTT 2 cut(s) 194, 226
FatI CATG 1 cut(s) 328
Fnu4HI GCNGC 3 cut(s) 33, 149, 177
Fsp4HI GCNGC 3 cut(s) 33, 149, 177
GluI GCNGC 3 cut(s) 33, 149, 177
Hin1II CATG 1 cut(s) 332
Hpy166II GTNNAC 1 cut(s) 167
Hpy188I TCNGA 1 cut(s) 280
Hpy188III TCNNGA 1 cut(s) 76
Hpy8I GTNNAC 1 cut(s) 167
HpyAV CCTTC 1 cut(s) 267
HpyCH4V TGCA 3 cut(s) 90, 148, 176
HpyF3I CTNAG 1 cut(s) 53
Hsp92II CATG 1 cut(s) 332
Kzo9I GATC 2 cut(s) 44, 280
LpnPI CCDG 1 cut(s) 116
Lsp1109I GCAGC 2 cut(s) 160, 188
MalI GATC 2 cut(s) 46, 282
MboI GATC 2 cut(s) 44, 280
MboII GAAGA 4 cut(s) 214, 275, 278, 281
MflI RGATCY 1 cut(s) 44
MluCI AATT 1 cut(s) 301
MnlI CCTC 4 cut(s) 48, 112, 174, 332
MseI TTAA 3 cut(s) 11, 222, 258
MspA1I CMGCKG 1 cut(s) 101
NdeII GATC 2 cut(s) 44, 280
NlaIII CATG 1 cut(s) 332
NspI RCATGY 1 cut(s) 332
PcsI WCGNNNNNNNCGW 1 cut(s) 81
PkrI GCNGC 3 cut(s) 34, 150, 178
PsuI RGATCY 1 cut(s) 44
SaqAI TTAA 3 cut(s) 11, 222, 258
SatI GCNGC 3 cut(s) 33, 149, 177
Sau3AI GATC 2 cut(s) 44, 280
SetI ASST 3 cut(s) 21, 123, 278
SgeI CNNG 9 cut(s) 88, 95, 97, 121, 143, 164, 182, 192, 223
SmiI ATTTAAAT 1 cut(s) 223
SmlI CTYRAG 1 cut(s) 323
SmoI CTYRAG 1 cut(s) 323
Sse9I AATT 1 cut(s) 301
SsiI CCGC 2 cut(s) 32, 99
StyI CCWWGG 1 cut(s) 108
SwaI ATTTAAAT 1 cut(s) 223
TaqI TCGA 1 cut(s) 124
TasI AATT 1 cut(s) 301
TauI GCSGC 1 cut(s) 35
Tru1I TTAA 3 cut(s) 11, 222, 258
Tru9I TTAA 3 cut(s) 11, 222, 258
TseI GCWGC 2 cut(s) 148, 176
TspDTI ATGAA 2 cut(s) 20, 207
XceI RCATGY 1 cut(s) 332
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.