Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0007178

Physical Location & Seq

Genomic Coordinates Reverse (-)

2072550 .. 2074370

Gene Structure 1821 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g03840.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGAGCCAAGAACAGTCAAAGAAGGGTCATGATCAGCGGCAGAAGGCCATGAAATTTTCGGATGTTTTTCCAGCCGTTCAAGGCGAGCTGGCGGACAAAGCGGTGGCCCCAAAGGACGCTGCTACTATGCAGACGGCAGAAAGCGACGTCGTTGGGCAGAACCTCAAACGAGGCGCTGCCGCGACTATGCAGTCTGCCGCTGCACAGAATCAAAGGGCTGGTTATGTGGGACTAAATGACATGAATATTGTCGAAGATGACGTTACCATAACGGAGACTGATCTTCCCGGCCGCCGTATTATCACGGAGTCAGTCGGTGGACAGGTTGTTGGTGAATATATTCAGAGAACTCCTTTGGCAGCACCTTCCATTGTTCAAGCTGGTGATGGTCATATCACCATTGGTGAAGCCTTGGAGACAACTGTTATGACCGCCAGAAAGAAGCCGGTGGAGTGGAGTGACGCGGCTGCAATTCAGGCAGCTGAGATTAGGGCCACAGGCCGACCCCGCATTGTGCCTGGTGGTGTGGCTGCGGAGGCTCAATCTGCCGCAACCCTCAATGCTCGCACTATGCGCAATGAGGATAAGACCACACTTGGTGATATTCTTGCGGGTGCAGCCTCTAAACTACCAGATGACAAGCCAACTACACTGCAAGACGCCAAAGGTGTGACAGATGCAGAGATGCGAAATGATCGATACCAGACTACACATCCAACAGGTGTGGCAGCTTCAGTGGCTGCAGCGGCTAGGCTAAACCAGGATGCTAGCAACATTACAAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SMP

Protein Analysis

262

Amino Acids

27.43

Weight (kDa)

5.51

Isoelectric Point (pI)

33.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SMP	PF04927	18 - 73	1.1e-14	Seed maturation protein
SMP	PF04927	132 - 189	2.4e-21	Seed maturation protein
SMP	PF04927	197 - 255	2.3e-17	Seed maturation protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007178)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27980
fragaria_vesca	FvH4_6g03840 FvH4_6g03841
malus_domestica	MD04G1217900.v1.1 MD12G1235300.v1.1
prunus_persica	Prupe.6G337900_v2.0.a1 Prupe.6G337900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0452411
rosa_laevigata	RLG00000025605
rosa_multiflora	Rmu_co8111080.1_g000001 Rmu_sc0010928.1_g000016
rosa_roxburghii	Rroxscaffold_6G00429430 Rroxscaffold_6G00429940
rosa_rugosa	Rorug02G0640500 Rorug02G0640600
rosa_samantha	Rh3AG042400 Rh3AG042500 Rh3BG043900 Rh3BG044000 Rh3CG042700 Rh3CG042800 Rh3DG043400 Rh3DG043500
rosa_wichuraiana	Rw3G003250 Rw3G003260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	190
AatII	GACGTC	1 cut(s)	150
Acc16I	TGCGCA	1 cut(s)	575
AccII	CGCG	2 cut(s)	182, 464
AcoI	YGGCCR	1 cut(s)	289
AcsI	RAATTY	1 cut(s)	53
AcuI	CTGAAG	1 cut(s)	717
AcyI	GRCGYC	2 cut(s)	147, 660
AdeI	CACNNNGTG	1 cut(s)	599
AgsI	TTSAA	2 cut(s)	80, 377
AjnI	CCWGG	2 cut(s)	517, 759
AluBI	AGCT	4 cut(s)	88, 380, 482, 731
AluI	AGCT	4 cut(s)	88, 380, 482, 731
Alw26I	GTCTC	2 cut(s)	269, 410
AlwNI	CAGNNNCTG	1 cut(s)	740
AoxI	GGCC	5 cut(s)	45, 105, 289, 492, 499
ApoI	RAATTY	1 cut(s)	53
Asp700I	GAANNNNTTC	1 cut(s)	339
AspLEI	GCGC	2 cut(s)	176, 576
AspS9I	GGNCC	2 cut(s)	106, 492
AsuC2I	CCSGG	1 cut(s)	288
AsuHPI	GGTGA	5 cut(s)	344, 388, 395, 416, 611
AsuNHI	GCTAGC	1 cut(s)	767
BccI	CCATC	1 cut(s)	380
BceAI	ACGGC	3 cut(s)	59, 150, 279
BciT130I	CCWGG	2 cut(s)	519, 761
BclI	TGATCA	1 cut(s)	31
BcnI	CCSGG	1 cut(s)	288
BcoDI	GTCTC	2 cut(s)	269, 410
BfaI	CTAG	2 cut(s)	750, 768
BfmI	CTRYAG	1 cut(s)	741
BfoI	RGCGCY	1 cut(s)	177
Bme1390I	CCNGG	3 cut(s)	288, 519, 761
BmgT120I	GGNCC	2 cut(s)	106, 492
BmiI	GGNNCC	1 cut(s)	108
BmrFI	CCNGG	3 cut(s)	288, 519, 761
BmsI	GCATC	3 cut(s)	667, 675, 754
BmtI	GCTAGC	1 cut(s)	771
BpuMI	CCSGG	1 cut(s)	288
Bsa29I	ATCGAT	1 cut(s)	697
BsaHI	GRCGYC	2 cut(s)	147, 660
BsaJI	CCNNGG	1 cut(s)	411
Bse118I	RCCGGY	1 cut(s)	445
Bse3DI	GCAATG	1 cut(s)	583
BseBI	CCWGG	2 cut(s)	519, 761
BseCI	ATCGAT	1 cut(s)	697
BseDI	CCNNGG	1 cut(s)	411
BseGI	GGATG	3 cut(s)	67, 712, 769
BseMI	GCAATG	1 cut(s)	583
BseMII	CTCAG	1 cut(s)	474
BseX3I	CGGCCG	1 cut(s)	289
BsgI	GTGCAG	2 cut(s)	186, 636
Bsh1236I	CGCG	2 cut(s)	182, 464
Bsh1285I	CGRYCG	1 cut(s)	292
BshFI	GGCC	5 cut(s)	47, 107, 291, 494, 501
BshVI	ATCGAT	1 cut(s)	697
BsiEI	CGRYCG	1 cut(s)	292
BsiSI	CCGG	2 cut(s)	288, 446
BslFI	GGGAC	1 cut(s)	243
BsmAI	GTCTC	2 cut(s)	269, 410
BsmFI	GGGAC	1 cut(s)	243
BsnI	GGCC	5 cut(s)	47, 107, 291, 494, 501
Bsp143I	GATC	3 cut(s)	31, 280, 694
BspANI	GGCC	5 cut(s)	47, 107, 291, 494, 501
BspCNI	CTCAG	1 cut(s)	475
BspDI	ATCGAT	1 cut(s)	697
BspFNI	CGCG	2 cut(s)	182, 464
BspHI	TCATGA	1 cut(s)	28
BspLI	GGNNCC	1 cut(s)	108
BspMAI	CTGCAG	1 cut(s)	745
BspOI	GCTAGC	1 cut(s)	771
BsrDI	GCAATG	1 cut(s)	583
BsrFI	RCCGGY	1 cut(s)	445
BssAI	RCCGGY	1 cut(s)	445
BssECI	CCNNGG	1 cut(s)	411
BssMI	GATC	3 cut(s)	31, 280, 694
BssNI	GRCGYC	2 cut(s)	147, 660
BssT1I	CCWWGG	1 cut(s)	411
Bst2UI	CCWGG	2 cut(s)	519, 761
Bst4CI	ACNGT	2 cut(s)	15, 424
BstACI	GRCGYC	2 cut(s)	147, 660
BstC8I	GCNNGC	4 cut(s)	86, 90, 565, 769
BstDEI	CTNAG	1 cut(s)	483
BstF5I	GGATG	3 cut(s)	67, 712, 769
BstFNI	CGCG	2 cut(s)	182, 464
BstH2I	RGCGCY	1 cut(s)	177
BstHHI	GCGC	2 cut(s)	176, 576
BstKTI	GATC	3 cut(s)	34, 283, 697
BstMAI	GTCTC	2 cut(s)	269, 410
BstMBI	GATC	3 cut(s)	31, 280, 694
BstMCI	CGRYCG	1 cut(s)	292
BstMWI	GCNNNNNNNGC	9 cut(s)	98, 476, 507, 536, 545, 573, 617, 737, 746
BstNI	CCWGG	2 cut(s)	519, 761
BstSCI	CCNGG	3 cut(s)	286, 517, 759
BstSFI	CTRYAG	1 cut(s)	741
BstUI	CGCG	2 cut(s)	182, 464
BstZI	CGGCCG	1 cut(s)	289
Bsu15I	ATCGAT	1 cut(s)	697
BsuRI	GGCC	5 cut(s)	47, 107, 291, 494, 501
BsuTUI	ATCGAT	1 cut(s)	697
BtsCI	GGATG	3 cut(s)	67, 712, 769
BtsI	GCAGTG	1 cut(s)	650
BtsIMutI	CAGTG	2 cut(s)	650, 741
Cac8I	GCNNGC	4 cut(s)	86, 90, 565, 769
CaiI	CAGNNNCTG	1 cut(s)	740
CciI	TCATGA	1 cut(s)	28
CfoI	GCGC	2 cut(s)	176, 576
Cfr10I	RCCGGY	1 cut(s)	445
Cfr13I	GGNCC	2 cut(s)	106, 492
ClaI	ATCGAT	1 cut(s)	697
CseI	GACGC	3 cut(s)	125, 470, 668
CspCI	CAANNNNNGTGG	2 cut(s)	705, 740
CviAII	CATG	3 cut(s)	29, 49, 241
DdeI	CTNAG	1 cut(s)	483
DpnI	GATC	3 cut(s)	33, 282, 696
DpnII	GATC	3 cut(s)	31, 280, 694
DraIII	CACNNNGTG	1 cut(s)	599
DrdI	GACNNNNNNGTC	1 cut(s)	190
DseDI	GACNNNNNNGTC	1 cut(s)	190
EaeI	YGGCCR	1 cut(s)	289
EagI	CGGCCG	1 cut(s)	289
EciI	GGCGGA	1 cut(s)	107
EclXI	CGGCCG	1 cut(s)	289
Eco130I	CCWWGG	1 cut(s)	411
Eco52I	CGGCCG	1 cut(s)	289
Eco57I	CTGAAG	1 cut(s)	717
EcoRII	CCWGG	2 cut(s)	517, 759
EcoT14I	CCWWGG	1 cut(s)	411
ErhI	CCWWGG	1 cut(s)	411
FaeI	CATG	3 cut(s)	32, 52, 244
FaqI	GGGAC	1 cut(s)	243
FatI	CATG	3 cut(s)	28, 48, 240
FauI	CCCGC	2 cut(s)	515, 604
FbaI	TGATCA	1 cut(s)	31
FokI	GGATG	3 cut(s)	74, 699, 776
FspBI	CTAG	2 cut(s)	750, 768
FspI	TGCGCA	1 cut(s)	575
GlaI	GCGC	2 cut(s)	175, 575
HaeII	RGCGCY	1 cut(s)	177
HaeIII	GGCC	5 cut(s)	47, 107, 291, 494, 501
HapII	CCGG	2 cut(s)	288, 446
HgaI	GACGC	3 cut(s)	125, 470, 668
HhaI	GCGC	2 cut(s)	176, 576
Hin1I	GRCGYC	2 cut(s)	147, 660
Hin1II	CATG	3 cut(s)	32, 52, 244
Hin6I	GCGC	2 cut(s)	174, 574
HinP1I	GCGC	2 cut(s)	174, 574
HinfI	GANTC	2 cut(s)	208, 308
HpaII	CCGG	2 cut(s)	288, 446
HphI	GGTGA	5 cut(s)	344, 388, 395, 416, 611
Hpy166II	GTNNAC	1 cut(s)	320
Hpy188I	TCNGA	2 cut(s)	61, 345
Hpy188III	TCNNGA	1 cut(s)	29
Hpy8I	GTNNAC	1 cut(s)	320
Hpy99I	CGWCG	2 cut(s)	149, 152
HpyAV	CCTTC	3 cut(s)	16, 37, 375
HpyCH4III	ACNGT	2 cut(s)	15, 424
HpyCH4IV	ACGT	2 cut(s)	147, 261
HpyCH4V	TGCA	8 cut(s)	130, 190, 203, 470, 617, 655, 680, 743
HpyF10VI	GCNNNNNNNGC	9 cut(s)	98, 476, 507, 536, 545, 573, 617, 737, 746
HpyF3I	CTNAG	1 cut(s)	483
HpySE526I	ACGT	2 cut(s)	147, 261
Hsp92I	GRCGYC	2 cut(s)	147, 660
Hsp92II	CATG	3 cut(s)	32, 52, 244
HspAI	GCGC	2 cut(s)	174, 574
Ksp22I	TGATCA	1 cut(s)	31
Kzo9I	GATC	3 cut(s)	31, 280, 694
LweI	GCATC	3 cut(s)	667, 675, 754
MaeI	CTAG	2 cut(s)	750, 768
MaeII	ACGT	2 cut(s)	147, 261
MaeIII	GTNAC	3 cut(s)	262, 458, 670
MalI	GATC	3 cut(s)	33, 282, 696
MboI	GATC	3 cut(s)	31, 280, 694
MboII	GAAGA	2 cut(s)	266, 275
MluCI	AATT	2 cut(s)	53, 471
MlyI	GAGTC	1 cut(s)	317
MmeI	TCCRAC	1 cut(s)	740
MnlI	CCTC	6 cut(s)	164, 173, 529, 566, 574, 631
MroXI	GAANNNNTTC	1 cut(s)	339
MspA1I	CMGCKG	4 cut(s)	37, 200, 482, 746
MspI	CCGG	2 cut(s)	288, 446
MspR9I	CCNGG	3 cut(s)	288, 519, 761
MvaI	CCWGG	2 cut(s)	519, 761
MvnI	CGCG	2 cut(s)	182, 464
MwoI	GCNNNNNNNGC	9 cut(s)	98, 476, 507, 536, 545, 573, 617, 737, 746
NciI	CCSGG	1 cut(s)	288
NdeII	GATC	3 cut(s)	31, 280, 694
NheI	GCTAGC	1 cut(s)	767
NlaIII	CATG	3 cut(s)	32, 52, 244
NlaIV	GGNNCC	1 cut(s)	108
NmuCI	GTSAC	2 cut(s)	458, 670
NsbI	TGCGCA	1 cut(s)	575
PagI	TCATGA	1 cut(s)	28
PcsI	WCGNNNNNNNCGW	1 cut(s)	258
PdmI	GAANNNNTTC	1 cut(s)	339
PfeI	GAWTC	1 cut(s)	208
PleI	GAGTC	1 cut(s)	316
PpsI	GAGTC	1 cut(s)	316
Psp6I	CCWGG	2 cut(s)	517, 759
PspGI	CCWGG	2 cut(s)	517, 759
PspN4I	GGNNCC	1 cut(s)	108
PspPI	GGNCC	2 cut(s)	106, 492
PstI	CTGCAG	1 cut(s)	745
PstNI	CAGNNNCTG	1 cut(s)	740
PvuII	CAGCTG	1 cut(s)	482
Sau3AI	GATC	3 cut(s)	31, 280, 694
Sau96I	GGNCC	2 cut(s)	106, 492
SchI	GAGTC	1 cut(s)	317
ScrFI	CCNGG	3 cut(s)	288, 519, 761
SfaNI	GCATC	3 cut(s)	667, 675, 754
SfcI	CTRYAG	1 cut(s)	741
Sse9I	AATT	2 cut(s)	53, 471
SspI	AATATT	1 cut(s)	247
SspMI	CTAG	2 cut(s)	750, 768
StyD4I	CCNGG	3 cut(s)	286, 517, 759
StyI	CCWWGG	1 cut(s)	411
TaaI	ACNGT	2 cut(s)	15, 424
TaiI	ACGT	2 cut(s)	150, 264
TaqI	TCGA	2 cut(s)	252, 697
TasI	AATT	2 cut(s)	53, 471
TauI	GCSGC	7 cut(s)	40, 182, 200, 294, 467, 551, 749
TfiI	GAWTC	1 cut(s)	208
TscAI	CASTG	2 cut(s)	657, 741
TseFI	GTSAC	2 cut(s)	458, 670
Tsp45I	GTSAC	2 cut(s)	458, 670
TspDTI	ATGAA	2 cut(s)	65, 257
TspGWI	ACGGA	2 cut(s)	287, 320
TspRI	CASTG	2 cut(s)	657, 741
XapI	RAATTY	1 cut(s)	53
XmnI	GAANNNNTTC	1 cut(s)	339
XspI	CTAG	2 cut(s)	750, 768
ZraI	GACGTC	1 cut(s)	148

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.