Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0007178

Physical Location & Seq

Genomic Coordinates Forward (+)

29289481 .. 29291386

Gene Structure 1906 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G337900.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGAGCCAAGAACAGCCGCGGAAGCCCGAGGATCAGAAGGAAGCCGTGACATATGGGGACGTGTTTCCCGGTGTCCAGGGCGTGGAGCTGGCGGACAAGTTGGTGGCGCCCAAGGACGCCGCCATCATGCAGGCGGAGGAGAATGCGGTGCTTGGGAAGACCATCAAGGGCGGTGCAGCCGCAACCTTGCAGACCGCCGCCAGGCAGAACGAGAAGGCTGGGGTGGTGGGTCCCGATGACATGAATGCCAATATTGTTACAGGAGACGAGGGCGTTAGCGTTAAGGAGGCTGAGCTCCCGGGACGCCGTATAATAACAGAATCAATCGCTGGACAGGGTTCGGATTCAAATACAAGGAATGTAGATCACGAAAAGCAAAGGAAAATCTATAAATTGGTTGAGGCTGTGGGGCAATATAGCCAGAGAGCTCCTTTGGCAGCGCCAAACACCATTCAAGCTGGTGGGGCTGGTGGTCAAATCACCATTGGTGAAGCCCTGGAAGCCACTGCTATGACAGCTGGACAGAAACCGGTGGAGTGGAGTGATGCAGCCGCAATTCAAGCAGCCGAAGTCAGAGCCACTGGCCGAACCAACATTGTACCCGGTGGTGTGGCGGCCGCAGCTCAGTCGGCCGCAACCCTCAACGCTCGGGCTACGAAGGACGAGGAGAAGACGAAACTCGCCGACATTCTAGCGGATGCTACTTCAAAATTGCCAGCAGACAAACCGGCGACACGTCGAGATGCCGAGGGGGTGACGGGTGCAGAGATGAGAAATGATCCGTTTCTGACTACACACCCAACGGGCGTGGCAGCTTCGGTGGCAGCAGCAGCCAGGCTCAACCAGACCAATAGTAACGAAATGCCGAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SMP

Protein Analysis

291

Amino Acids

30.01

Weight (kDa)

5.21

Isoelectric Point (pI)

29.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007178)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27980
fragaria_vesca	FvH4_6g03840 FvH4_6g03841
malus_domestica	MD04G1217900.v1.1 MD12G1235300.v1.1
prunus_persica	Prupe.6G337900_v2.0.a1 Prupe.6G337900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0452411
rosa_laevigata	RLG00000025605
rosa_multiflora	Rmu_co8111080.1_g000001 Rmu_sc0010928.1_g000016
rosa_roxburghii	Rroxscaffold_6G00429430 Rroxscaffold_6G00429940
rosa_rugosa	Rorug02G0640500 Rorug02G0640600
rosa_samantha	Rh3AG042400 Rh3AG042500 Rh3BG043900 Rh3BG044000 Rh3CG042700 Rh3CG042800 Rh3DG043400 Rh3DG043500
rosa_wichuraiana	Rw3G003250 Rw3G003260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	106
AccB7I	CCANNNNNTGG	1 cut(s)	82
AccII	CGCG	1 cut(s)	19
AclWI	GGATC	2 cut(s)	39, 773
AcoI	YGGCCR	3 cut(s)	583, 615, 630
AcyI	GRCGYC	3 cut(s)	107, 117, 304
AfaI	GTAC	1 cut(s)	600
AfiI	CCNNNNNNNGG	2 cut(s)	82, 201
AflIII	ACRYGT	2 cut(s)	60, 734
AgeI	ACCGGT	1 cut(s)	529
AgsI	TTSAA	4 cut(s)	348, 455, 560, 708
AjiI	CACGTC	2 cut(s)	61, 737
AjnI	CCWGG	4 cut(s)	75, 200, 495, 833
AluBI	AGCT	7 cut(s)	88, 295, 428, 458, 518, 623, 815
AluI	AGCT	7 cut(s)	88, 295, 428, 458, 518, 623, 815
Alw21I	GWGCWC	2 cut(s)	297, 430
Alw26I	GTCTC	1 cut(s)	258
AlwI	GGATC	2 cut(s)	39, 773
Ama87I	CYCGRG	3 cut(s)	26, 298, 648
AoxI	GGCC	3 cut(s)	583, 615, 630
ApeKI	GCWGC	9 cut(s)	176, 437, 548, 563, 620, 812, 824, 827, 830
AsiGI	ACCGGT	1 cut(s)	529
AspLEI	GCGC	2 cut(s)	109, 442
AspS9I	GGNCC	1 cut(s)	230
AsuC2I	CCSGG	4 cut(s)	69, 299, 300, 603
AsuHPI	GGTGA	3 cut(s)	472, 500, 766
AvaI	CYCGRG	3 cut(s)	26, 298, 648
AvaII	GGWCC	1 cut(s)	230
BanI	GGYRCC	1 cut(s)	106
BanII	GRGCYC	2 cut(s)	297, 430
BbsI	GAAGAC	2 cut(s)	164, 677
Bbv12I	GWGCWC	2 cut(s)	297, 430
BbvI	GCAGC	9 cut(s)	188, 449, 560, 575, 632, 824, 836, 839, 842
BccI	CCATC	2 cut(s)	131, 170
BceAI	ACGGC	2 cut(s)	29, 291
BcgI	CGANNNNNNTGC	2 cut(s)	609, 643
BciT130I	CCWGG	4 cut(s)	77, 202, 497, 835
BcnI	CCSGG	4 cut(s)	69, 299, 300, 603
BcoDI	GTCTC	1 cut(s)	258
BfaI	CTAG	1 cut(s)	692
BfoI	RGCGCY	2 cut(s)	110, 443
BlpI	GCTNAGC	1 cut(s)	291
Bme1390I	CCNGG	8 cut(s)	69, 77, 202, 299, 300, 497, 603, 835
Bme18I	GGWCC	1 cut(s)	230
BmeT110I	CYCGRG	3 cut(s)	26, 298, 648
BmgBI	CACGTC	2 cut(s)	61, 737
BmgT120I	GGNCC	1 cut(s)	230
BmiI	GGNNCC	3 cut(s)	108, 231, 232
BmrFI	CCNGG	8 cut(s)	69, 77, 202, 299, 300, 497, 603, 835
BmsI	GCATC	3 cut(s)	535, 688, 733
BpiI	GAAGAC	2 cut(s)	164, 677
Bpu1102I	GCTNAGC	1 cut(s)	291
BpuMI	CCSGG	4 cut(s)	69, 299, 300, 603
BsaHI	GRCGYC	3 cut(s)	107, 117, 304
BsaJI	CCNNGG	7 cut(s)	17, 27, 76, 111, 298, 495, 747
BsaWI	WCCGGW	1 cut(s)	529
Bsc4I	CCNNNNNNNGG	2 cut(s)	82, 201
Bse118I	RCCGGY	2 cut(s)	529, 727
Bse1I	ACTGG	1 cut(s)	586
BseBI	CCWGG	4 cut(s)	77, 202, 497, 835
BseDI	CCNNGG	7 cut(s)	17, 27, 76, 111, 298, 495, 747
BseGI	GGATG	1 cut(s)	703
BseLI	CCNNNNNNNGG	2 cut(s)	82, 201
BseMII	CTCAG	2 cut(s)	282, 638
BseNI	ACTGG	1 cut(s)	586
BseRI	GAGGAG	2 cut(s)	152, 680
BseX3I	CGGCCG	2 cut(s)	615, 630
BseXI	GCAGC	9 cut(s)	188, 449, 560, 575, 632, 824, 836, 839, 842
BseYI	CCCAGC	1 cut(s)	218
BsgI	GTGCAG	2 cut(s)	195, 783
Bsh1236I	CGCG	1 cut(s)	19
Bsh1285I	CGRYCG	2 cut(s)	618, 633
BshFI	GGCC	3 cut(s)	585, 617, 632
BshNI	GGYRCC	1 cut(s)	106
BshTI	ACCGGT	1 cut(s)	529
BsiEI	CGRYCG	2 cut(s)	618, 633
BsiHKAI	GWGCWC	2 cut(s)	297, 430
BsiHKCI	CYCGRG	3 cut(s)	26, 298, 648
BsiSI	CCGG	5 cut(s)	69, 299, 530, 603, 728
BslFI	GGGAC	3 cut(s)	71, 216, 315
BslI	CCNNNNNNNGG	2 cut(s)	82, 201
BsmAI	GTCTC	1 cut(s)	258
BsmBI	CGTCTC	1 cut(s)	258
BsmFI	GGGAC	3 cut(s)	71, 216, 315
BsmI	GAATGC	2 cut(s)	148, 250
BsnI	GGCC	3 cut(s)	585, 617, 632
BsoBI	CYCGRG	3 cut(s)	26, 298, 648
Bsp1286I	GDGCHC	2 cut(s)	297, 430
Bsp143I	GATC	3 cut(s)	31, 364, 778
Bsp1720I	GCTNAGC	1 cut(s)	291
BspANI	GGCC	3 cut(s)	585, 617, 632
BspCNI	CTCAG	2 cut(s)	283, 637
BspFNI	CGCG	1 cut(s)	19
BspLI	GGNNCC	3 cut(s)	108, 231, 232
BspPI	GGATC	2 cut(s)	39, 773
BspT107I	GGYRCC	1 cut(s)	106
BsrFI	RCCGGY	2 cut(s)	529, 727
BsrI	ACTGG	1 cut(s)	586
BssAI	RCCGGY	2 cut(s)	529, 727
BssECI	CCNNGG	7 cut(s)	17, 27, 76, 111, 298, 495, 747
BssMI	GATC	3 cut(s)	31, 364, 778
BssNI	GRCGYC	3 cut(s)	107, 117, 304
BssT1I	CCWWGG	1 cut(s)	111
Bst2UI	CCWGG	4 cut(s)	77, 202, 497, 835
BstACI	GRCGYC	3 cut(s)	107, 117, 304
BstC8I	GCNNGC	3 cut(s)	90, 132, 717
BstDEI	CTNAG	2 cut(s)	291, 624
BstDSI	CCRYGG	1 cut(s)	17
BstF5I	GGATG	1 cut(s)	703
BstFNI	CGCG	1 cut(s)	19
BstH2I	RGCGCY	2 cut(s)	110, 443
BstHHI	GCGC	2 cut(s)	109, 442
BstKTI	GATC	3 cut(s)	34, 367, 781
BstMAI	GTCTC	1 cut(s)	258
BstMBI	GATC	3 cut(s)	31, 364, 778
BstMCI	CGRYCG	2 cut(s)	618, 633
BstNI	CCWGG	4 cut(s)	77, 202, 497, 835
BstSCI	CCNGG	8 cut(s)	67, 75, 200, 297, 298, 495, 601, 833
BstUI	CGCG	1 cut(s)	19
BstV1I	GCAGC	9 cut(s)	188, 449, 560, 575, 632, 824, 836, 839, 842
BstV2I	GAAGAC	2 cut(s)	164, 677
BstZI	CGGCCG	2 cut(s)	615, 630
BsuRI	GGCC	3 cut(s)	585, 617, 632
BtgI	CCRYGG	1 cut(s)	17
BtrI	CACGTC	2 cut(s)	61, 737
BtsCI	GGATG	1 cut(s)	703
BtsI	GCAGTG	1 cut(s)	504
BtsIMutI	CAGTG	2 cut(s)	504, 579
Cac8I	GCNNGC	3 cut(s)	90, 132, 717
CciNI	GCGGCCGC	1 cut(s)	615
CfoI	GCGC	2 cut(s)	109, 442
Cfr10I	RCCGGY	2 cut(s)	529, 727
Cfr13I	GGNCC	1 cut(s)	230
Cfr42I	CCGCGG	1 cut(s)	20
Cfr9I	CCCGGG	1 cut(s)	298
CseI	GACGC	2 cut(s)	125, 312
Csp6I	GTAC	1 cut(s)	599
CspAI	ACCGGT	1 cut(s)	529
CspCI	CAANNNNNGTGG	2 cut(s)	789, 824
CviAII	CATG	2 cut(s)	127, 241
CviQI	GTAC	1 cut(s)	599
DdeI	CTNAG	2 cut(s)	291, 624
DinI	GGCGCC	1 cut(s)	108
DpnI	GATC	3 cut(s)	33, 366, 780
DpnII	GATC	3 cut(s)	31, 364, 778
EaeI	YGGCCR	3 cut(s)	583, 615, 630
EagI	CGGCCG	2 cut(s)	615, 630
EciI	GGCGGA	2 cut(s)	107, 149
Ecl136II	GAGCTC	2 cut(s)	295, 428
EclXI	CGGCCG	2 cut(s)	615, 630
Eco130I	CCWWGG	1 cut(s)	111
Eco24I	GRGCYC	2 cut(s)	297, 430
Eco47I	GGWCC	1 cut(s)	230
Eco52I	CGGCCG	2 cut(s)	615, 630
Eco53kI	GAGCTC	2 cut(s)	295, 428
Eco88I	CYCGRG	3 cut(s)	26, 298, 648
EcoICRI	GAGCTC	2 cut(s)	295, 428
EcoO109I	RGGNCCY	1 cut(s)	230
EcoRII	CCWGG	4 cut(s)	75, 200, 495, 833
EcoT14I	CCWWGG	1 cut(s)	111
EcoT38I	GRGCYC	2 cut(s)	297, 430
EgeI	GGCGCC	1 cut(s)	108
EheI	GGCGCC	1 cut(s)	108
ErhI	CCWWGG	1 cut(s)	111
Esp3I	CGTCTC	1 cut(s)	258
FaeI	CATG	2 cut(s)	130, 244
FaiI	YATR	8 cut(s)	52, 54, 128, 242, 311, 390, 417, 512
FaqI	GGGAC	3 cut(s)	71, 216, 315
FatI	CATG	2 cut(s)	126, 240
FauNDI	CATATG	1 cut(s)	52
FokI	GGATG	1 cut(s)	710
FriOI	GRGCYC	2 cut(s)	297, 430
FspBI	CTAG	1 cut(s)	692
GlaI	GCGC	2 cut(s)	108, 441
GsaI	CCCAGC	1 cut(s)	222
HaeII	RGCGCY	2 cut(s)	110, 443
HaeIII	GGCC	3 cut(s)	585, 617, 632
HapII	CCGG	5 cut(s)	69, 299, 530, 603, 728
HgaI	GACGC	2 cut(s)	125, 312
HhaI	GCGC	2 cut(s)	109, 442
Hin1I	GRCGYC	3 cut(s)	107, 117, 304
Hin1II	CATG	2 cut(s)	130, 244
Hin6I	GCGC	2 cut(s)	107, 440
HinP1I	GCGC	2 cut(s)	107, 440
HinfI	GANTC	2 cut(s)	320, 344
HpaII	CCGG	5 cut(s)	69, 299, 530, 603, 728
HphI	GGTGA	3 cut(s)	472, 500, 766
Hpy188I	TCNGA	4 cut(s)	36, 343, 575, 789
Hpy188III	TCNNGA	3 cut(s)	233, 368, 740
Hpy99I	CGWCG	1 cut(s)	741
HpyAV	CCTTC	3 cut(s)	31, 208, 652
HpyCH4IV	ACGT	2 cut(s)	60, 736
HpyCH4V	TGCA	5 cut(s)	130, 176, 190, 548, 764
HpyF3I	CTNAG	2 cut(s)	291, 624
HpySE526I	ACGT	2 cut(s)	60, 736
Hsp92I	GRCGYC	3 cut(s)	107, 117, 304
Hsp92II	CATG	2 cut(s)	130, 244
HspAI	GCGC	2 cut(s)	107, 440
KasI	GGCGCC	1 cut(s)	106
KflI	GGGWCCC	1 cut(s)	230
KspI	CCGCGG	1 cut(s)	20
Kzo9I	GATC	3 cut(s)	31, 364, 778
LmnI	GCTCC	3 cut(s)	85, 300, 433
Lsp1109I	GCAGC	9 cut(s)	188, 449, 560, 575, 632, 824, 836, 839, 842
LweI	GCATC	3 cut(s)	535, 688, 733
MaeI	CTAG	1 cut(s)	692
MaeII	ACGT	2 cut(s)	60, 736
MaeIII	GTNAC	4 cut(s)	46, 256, 754, 854
MalI	GATC	3 cut(s)	33, 366, 780
MboI	GATC	3 cut(s)	31, 364, 778
MboII	GAAGA	2 cut(s)	169, 682
MhlI	GDGCHC	2 cut(s)	297, 430
MluCI	AATT	3 cut(s)	392, 555, 710
Mly113I	GGCGCC	1 cut(s)	107
MnlI	CCTC	8 cut(s)	22, 130, 262, 280, 394, 650, 658, 742
MseI	TTAA	1 cut(s)	282
MslI	CAYNNNNRTG	1 cut(s)	509
MspA1I	CMGCKG	2 cut(s)	19, 518
MspI	CCGG	5 cut(s)	69, 299, 530, 603, 728
MspR9I	CCNGG	8 cut(s)	69, 77, 202, 299, 300, 497, 603, 835
Mva1269I	GAATGC	2 cut(s)	148, 250
MvaI	CCWGG	4 cut(s)	77, 202, 497, 835
MvnI	CGCG	1 cut(s)	19
NarI	GGCGCC	1 cut(s)	107
NciI	CCSGG	4 cut(s)	69, 299, 300, 603
NdeI	CATATG	1 cut(s)	52
NdeII	GATC	3 cut(s)	31, 364, 778
NlaIII	CATG	2 cut(s)	130, 244
NlaIV	GGNNCC	3 cut(s)	108, 231, 232
NmeAIII	GCCGAG	1 cut(s)	772
NmuCI	GTSAC	2 cut(s)	46, 754
NotI	GCGGCCGC	1 cut(s)	615
PctI	GAATGC	2 cut(s)	148, 250
PfeI	GAWTC	2 cut(s)	320, 344
PflMI	CCANNNNNTGG	1 cut(s)	82
PinAI	ACCGGT	1 cut(s)	529
PluTI	GGCGCC	1 cut(s)	110
PpuMI	RGGWCCY	1 cut(s)	230
Psp124BI	GAGCTC	2 cut(s)	297, 430
Psp5II	RGGWCCY	1 cut(s)	230
Psp6I	CCWGG	4 cut(s)	75, 200, 495, 833
PspFI	CCCAGC	1 cut(s)	218
PspGI	CCWGG	4 cut(s)	75, 200, 495, 833
PspN4I	GGNNCC	3 cut(s)	108, 231, 232
PspPI	GGNCC	1 cut(s)	230
PspPPI	RGGWCCY	1 cut(s)	230
PvuII	CAGCTG	1 cut(s)	518
RsaI	GTAC	1 cut(s)	600
RsaNI	GTAC	1 cut(s)	599
RseI	CAYNNNNRTG	1 cut(s)	509
SacI	GAGCTC	2 cut(s)	297, 430
SacII	CCGCGG	1 cut(s)	20
SaqAI	TTAA	1 cut(s)	282
Sau3AI	GATC	3 cut(s)	31, 364, 778
Sau96I	GGNCC	1 cut(s)	230
ScrFI	CCNGG	8 cut(s)	69, 77, 202, 299, 300, 497, 603, 835
SduI	GDGCHC	2 cut(s)	297, 430
SfaNI	GCATC	3 cut(s)	535, 688, 733
SfoI	GGCGCC	1 cut(s)	108
Sfr303I	CCGCGG	1 cut(s)	20
SgrBI	CCGCGG	1 cut(s)	20
SinI	GGWCC	1 cut(s)	230
SmaI	CCCGGG	1 cut(s)	300
SmiMI	CAYNNNNRTG	1 cut(s)	509
Sse9I	AATT	3 cut(s)	392, 555, 710
SspDI	GGCGCC	1 cut(s)	106
SspI	AATATT	1 cut(s)	253
SspMI	CTAG	1 cut(s)	692
SstI	GAGCTC	2 cut(s)	297, 430
StyD4I	CCNGG	8 cut(s)	67, 75, 200, 297, 298, 495, 601, 833
StyI	CCWWGG	1 cut(s)	111
TaiI	ACGT	2 cut(s)	63, 739
TaqI	TCGA	1 cut(s)	739
TasI	AATT	3 cut(s)	392, 555, 710
TauI	GCSGC	8 cut(s)	19, 122, 182, 200, 554, 617, 620, 635
TfiI	GAWTC	2 cut(s)	320, 344
Tru1I	TTAA	1 cut(s)	282
Tru9I	TTAA	1 cut(s)	282
TscAI	CASTG	2 cut(s)	511, 586
TseFI	GTSAC	2 cut(s)	46, 754
TseI	GCWGC	9 cut(s)	176, 437, 548, 563, 620, 812, 824, 827, 830
Tsp45I	GTSAC	2 cut(s)	46, 754
TspDTI	ATGAA	1 cut(s)	257
TspGWI	ACGGA	1 cut(s)	771
TspMI	CCCGGG	1 cut(s)	298
TspRI	CASTG	2 cut(s)	511, 586
Van91I	CCANNNNNTGG	1 cut(s)	82
VpaK11BI	GGWCC	1 cut(s)	230
XmaI	CCCGGG	1 cut(s)	298
XspI	CTAG	1 cut(s)	692

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.