Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0007178

Physical Location & Seq

Genomic Coordinates Forward (+)

30998307 .. 31000041

Gene Structure 1735 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1235300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGAGCCAAGAACAGCCGCGGAGACCTGAAGATCAGAAGGAACCGGTGACATATGGGGATGTGTTTCCCGGCGTTCAGGGCGCCCAGCTGGCGGACAAGGTGGTGACGCCCAAGGATGCCGCCATGATCCAGGCGGCAGAAAATGCTGTGTTGGGGCAGACCGTCAAGGGTGGTGCTGCTGCAATCATCCAGTCCGCTGCCACGCAGAATGAGAAGGCGGCTGTTTTCGGTTCAAGTGACGTGAAAGCGGATGTTGGAGGAGACGGCGGCGGGGTTAGCGTTAAGGAGGCTGATCTTCCGGGACGCCGTATATTAACGGAGTCGATCGGAGGACAGGGTTCGGATTCAAATCAAATGCAAGTAGATCATGAAAAGCAAAGGAAAATCCATGAATTGATCGAGGTTGTGGGGCAATACAGCCAGCGAGCTCCATTGGCACCACCAAACACTATGCAACTTGTCGGAGGCTCCGCCGTTCAAATCACCATTGGTGAGGCCCTGGAGGCCACGGCTATGACAGCCGGACAGAAGCCAGTTGAGTGGAGTGACGCCGCTGCAATTCAAGCGGCCGAGGTTAGAGCCACTGGCCGCACCAATATAGTACCTGGTGGTGTGGCCGCTGCTGCTCAGTCGGCTGCAACCCTCAATGCTCGGGCTACAAAGGACGAGGAGAAGACCAAACTGGCCGACATTCTTGCGAATGCAACTTCAAAGTTACCGGCAGACAAACCGGCAACACGTCGAGATGCTGAGGGAGTGACTGGTGCAGAAATGCGAAACGATCCATACCTGACTACACATCCAACTGGAGTGGCGGCTTCAGTGGCGGCCGCTGCTAGGCTGAACGAGAATAATAGCAGCCAAATGCCAAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SMP

Protein Analysis

292

Amino Acids

30.02

Weight (kDa)

5.26

Isoelectric Point (pI)

36.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SMP	PF04927	16 - 72	6.9e-17	Seed maturation protein
SMP	PF04927	161 - 219	1.6e-22	Seed maturation protein
SMP	PF04927	226 - 284	9.6e-21	Seed maturation protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007178)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27980
fragaria_vesca	FvH4_6g03840 FvH4_6g03841
malus_domestica	MD04G1217900.v1.1 MD12G1235300.v1.1
prunus_persica	Prupe.6G337900_v2.0.a1 Prupe.6G337900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0452411
rosa_laevigata	RLG00000025605
rosa_multiflora	Rmu_co8111080.1_g000001 Rmu_sc0010928.1_g000016
rosa_roxburghii	Rroxscaffold_6G00429430 Rroxscaffold_6G00429940
rosa_rugosa	Rorug02G0640500 Rorug02G0640600
rosa_samantha	Rh3AG042400 Rh3AG042500 Rh3BG043900 Rh3BG044000 Rh3CG042700 Rh3CG042800 Rh3DG043400 Rh3DG043500
rosa_wichuraiana	Rw3G003250 Rw3G003260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	80, 436
AccII	CGCG	1 cut(s)	19
AclWI	GGATC	2 cut(s)	121, 776
AcoI	YGGCCR	5 cut(s)	567, 586, 615, 684, 828
AcuI	CTGAAG	2 cut(s)	48, 804
AcyI	GRCGYC	4 cut(s)	81, 107, 304, 549
AfaI	GTAC	1 cut(s)	603
AfiI	CCNNNNNNNGG	2 cut(s)	91, 837
AflIII	ACRYGT	1 cut(s)	737
AgeI	ACCGGT	1 cut(s)	43
AgsI	TTSAA	5 cut(s)	234, 348, 479, 563, 711
AjiI	CACGTC	2 cut(s)	241, 740
AjnI	CCWGG	3 cut(s)	129, 498, 604
AluBI	AGCT	2 cut(s)	88, 428
AluI	AGCT	2 cut(s)	88, 428
Alw21I	GWGCWC	1 cut(s)	430
Alw26I	GTCTC	2 cut(s)	16, 255
AlwI	GGATC	2 cut(s)	121, 776
Ama87I	CYCGRG	1 cut(s)	651
AoxI	GGCC	7 cut(s)	495, 504, 567, 586, 615, 684, 828
ApeKI	GCWGC	9 cut(s)	176, 179, 197, 554, 620, 623, 635, 833, 858
AsiGI	ACCGGT	1 cut(s)	43
AspLEI	GCGC	1 cut(s)	83
AspS9I	GGNCC	1 cut(s)	496
AsuC2I	CCSGG	2 cut(s)	69, 300
AsuHPI	GGTGA	4 cut(s)	58, 115, 475, 503
AvaI	CYCGRG	1 cut(s)	651
BanI	GGYRCC	2 cut(s)	80, 436
BanII	GRGCYC	1 cut(s)	430
BbsI	GAAGAC	1 cut(s)	680
Bbv12I	GWGCWC	1 cut(s)	430
BbvCI	CCTCAGC	1 cut(s)	750
BbvI	GCAGC	9 cut(s)	163, 166, 184, 541, 607, 610, 622, 820, 870
BceAI	ACGGC	4 cut(s)	280, 291, 458, 525
BcgI	CGANNNNNNTGC	2 cut(s)	677, 711
BciT130I	CCWGG	3 cut(s)	131, 500, 606
BcnI	CCSGG	2 cut(s)	69, 300
BcoDI	GTCTC	2 cut(s)	16, 255
BfaI	CTAG	1 cut(s)	837
BfoI	RGCGCY	1 cut(s)	84
BglI	GCCNNNNNGGC	2 cut(s)	89, 503
Bme1390I	CCNGG	5 cut(s)	69, 131, 300, 500, 606
BmeT110I	CYCGRG	1 cut(s)	651
BmgBI	CACGTC	2 cut(s)	241, 740
BmgT120I	GGNCC	1 cut(s)	496
BmiI	GGNNCC	4 cut(s)	42, 82, 438, 469
BmrFI	CCNGG	5 cut(s)	69, 131, 300, 500, 606
BmsI	GCATC	2 cut(s)	106, 736
BpiI	GAAGAC	1 cut(s)	680
BpmI	CTGGAG	2 cut(s)	521, 828
Bpu10I	CCTNAGC	1 cut(s)	750
BpuMI	CCSGG	2 cut(s)	69, 300
BsaBI	GATNNNNATC	1 cut(s)	348
BsaHI	GRCGYC	4 cut(s)	81, 107, 304, 549
BsaI	GGTCTC	1 cut(s)	16
BsaJI	CCNNGG	5 cut(s)	17, 111, 498, 507, 570
BsaWI	WCCGGW	1 cut(s)	43
Bsc4I	CCNNNNNNNGG	2 cut(s)	91, 837
Bse118I	RCCGGY	3 cut(s)	43, 718, 730
Bse1I	ACTGG	6 cut(s)	190, 533, 589, 687, 766, 811
Bse8I	GATNNNNATC	1 cut(s)	348
BseBI	CCWGG	3 cut(s)	131, 500, 606
BseDI	CCNNGG	5 cut(s)	17, 111, 498, 507, 570
BseGI	GGATG	5 cut(s)	64, 121, 186, 256, 799
BseJI	GATNNNNATC	1 cut(s)	348
BseLI	CCNNNNNNNGG	2 cut(s)	91, 837
BseMII	CTCAG	2 cut(s)	641, 741
BseNI	ACTGG	6 cut(s)	190, 533, 589, 687, 766, 811
BseRI	GAGGAG	2 cut(s)	273, 683
BseX3I	CGGCCG	2 cut(s)	567, 828
BseXI	GCAGC	9 cut(s)	163, 166, 184, 541, 607, 610, 622, 820, 870
BseYI	CCCAGC	1 cut(s)	84
BsgI	GTGCAG	1 cut(s)	786
Bsh1236I	CGCG	1 cut(s)	19
Bsh1285I	CGRYCG	3 cut(s)	327, 570, 831
BshFI	GGCC	7 cut(s)	497, 506, 569, 588, 617, 686, 830
BshNI	GGYRCC	2 cut(s)	80, 436
BshTI	ACCGGT	1 cut(s)	43
BsiEI	CGRYCG	3 cut(s)	327, 570, 831
BsiHKAI	GWGCWC	1 cut(s)	430
BsiHKCI	CYCGRG	1 cut(s)	651
BsiSI	CCGG	6 cut(s)	44, 69, 299, 522, 719, 731
BslFI	GGGAC	1 cut(s)	315
BslI	CCNNNNNNNGG	2 cut(s)	91, 837
BsmAI	GTCTC	2 cut(s)	16, 255
BsmBI	CGTCTC	1 cut(s)	255
BsmFI	GGGAC	1 cut(s)	315
BsmI	GAATGC	1 cut(s)	706
BsnI	GGCC	7 cut(s)	497, 506, 569, 588, 617, 686, 830
Bso31I	GGTCTC	1 cut(s)	16
BsoBI	CYCGRG	1 cut(s)	651
Bsp1286I	GDGCHC	1 cut(s)	430
Bsp143I	GATC	7 cut(s)	31, 126, 292, 324, 364, 396, 781
BspANI	GGCC	7 cut(s)	497, 506, 569, 588, 617, 686, 830
BspCNI	CTCAG	2 cut(s)	640, 742
BspFNI	CGCG	1 cut(s)	19
BspHI	TCATGA	1 cut(s)	367
BspLI	GGNNCC	4 cut(s)	42, 82, 438, 469
BspPI	GGATC	2 cut(s)	121, 776
BspT107I	GGYRCC	2 cut(s)	80, 436
BspTNI	GGTCTC	1 cut(s)	16
BsrFI	RCCGGY	3 cut(s)	43, 718, 730
BsrI	ACTGG	6 cut(s)	190, 533, 589, 687, 766, 811
BssAI	RCCGGY	3 cut(s)	43, 718, 730
BssECI	CCNNGG	5 cut(s)	17, 111, 498, 507, 570
BssMI	GATC	7 cut(s)	31, 126, 292, 324, 364, 396, 781
BssNI	GRCGYC	4 cut(s)	81, 107, 304, 549
BssT1I	CCWWGG	1 cut(s)	111
Bst2UI	CCWGG	3 cut(s)	131, 500, 606
Bst4CI	ACNGT	1 cut(s)	163
BstACI	GRCGYC	4 cut(s)	81, 107, 304, 549
BstAPI	GCANNNNNTGC	1 cut(s)	143
BstC8I	GCNNGC	3 cut(s)	90, 422, 426
BstDEI	CTNAG	2 cut(s)	627, 750
BstDSI	CCRYGG	2 cut(s)	17, 507
BstF5I	GGATG	5 cut(s)	64, 121, 186, 256, 799
BstFNI	CGCG	1 cut(s)	19
BstH2I	RGCGCY	1 cut(s)	84
BstHHI	GCGC	1 cut(s)	83
BstKTI	GATC	7 cut(s)	34, 129, 295, 327, 367, 399, 784
BstMAI	GTCTC	2 cut(s)	16, 255
BstMBI	GATC	7 cut(s)	31, 126, 292, 324, 364, 396, 781
BstMCI	CGRYCG	3 cut(s)	327, 570, 831
BstNI	CCWGG	3 cut(s)	131, 500, 606
BstSCI	CCNGG	5 cut(s)	67, 129, 298, 498, 604
BstUI	CGCG	1 cut(s)	19
BstV1I	GCAGC	9 cut(s)	163, 166, 184, 541, 607, 610, 622, 820, 870
BstV2I	GAAGAC	1 cut(s)	680
BstXI	CCANNNNNNTGG	1 cut(s)	540
BstZI	CGGCCG	2 cut(s)	567, 828
BsuRI	GGCC	7 cut(s)	497, 506, 569, 588, 617, 686, 830
BtgI	CCRYGG	2 cut(s)	17, 507
BtrI	CACGTC	2 cut(s)	241, 740
BtsCI	GGATG	5 cut(s)	64, 121, 186, 256, 799
BtsIMutI	CAGTG	2 cut(s)	582, 828
Cac8I	GCNNGC	3 cut(s)	90, 422, 426
CciI	TCATGA	1 cut(s)	367
CciNI	GCGGCCGC	1 cut(s)	828
CfoI	GCGC	1 cut(s)	83
Cfr10I	RCCGGY	3 cut(s)	43, 718, 730
Cfr13I	GGNCC	1 cut(s)	496
Cfr42I	CCGCGG	1 cut(s)	20
CseI	GACGC	3 cut(s)	115, 312, 557
CsiI	ACCWGGT	1 cut(s)	604
Csp6I	GTAC	1 cut(s)	602
CspAI	ACCGGT	1 cut(s)	43
CspCI	CAANNNNNGTGG	2 cut(s)	792, 827
CviAII	CATG	3 cut(s)	124, 368, 389
CviQI	GTAC	1 cut(s)	602
DdeI	CTNAG	2 cut(s)	627, 750
DinI	GGCGCC	1 cut(s)	82
DpnI	GATC	7 cut(s)	33, 128, 294, 326, 366, 398, 783
DpnII	GATC	7 cut(s)	31, 126, 292, 324, 364, 396, 781
EaeI	YGGCCR	5 cut(s)	567, 586, 615, 684, 828
EagI	CGGCCG	2 cut(s)	567, 828
EciI	GGCGGA	2 cut(s)	107, 460
Ecl136II	GAGCTC	1 cut(s)	428
EclXI	CGGCCG	2 cut(s)	567, 828
Eco130I	CCWWGG	1 cut(s)	111
Eco24I	GRGCYC	1 cut(s)	430
Eco31I	GGTCTC	1 cut(s)	16
Eco52I	CGGCCG	2 cut(s)	567, 828
Eco53kI	GAGCTC	1 cut(s)	428
Eco57I	CTGAAG	2 cut(s)	48, 804
Eco88I	CYCGRG	1 cut(s)	651
EcoICRI	GAGCTC	1 cut(s)	428
EcoO109I	RGGNCCY	1 cut(s)	496
EcoRII	CCWGG	3 cut(s)	129, 498, 604
EcoT14I	CCWWGG	1 cut(s)	111
EcoT38I	GRGCYC	1 cut(s)	430
EgeI	GGCGCC	1 cut(s)	82
EheI	GGCGCC	1 cut(s)	82
ErhI	CCWWGG	1 cut(s)	111
Esp3I	CGTCTC	1 cut(s)	255
FaeI	CATG	3 cut(s)	127, 371, 392
FaqI	GGGAC	1 cut(s)	315
FatI	CATG	3 cut(s)	123, 367, 388
FauI	CCCGC	1 cut(s)	263
FauNDI	CATATG	1 cut(s)	52
FokI	GGATG	5 cut(s)	71, 128, 173, 263, 786
FriOI	GRGCYC	1 cut(s)	430
FspBI	CTAG	1 cut(s)	837
GlaI	GCGC	1 cut(s)	82
GsaI	CCCAGC	1 cut(s)	88
GsuI	CTGGAG	2 cut(s)	521, 828
HaeII	RGCGCY	1 cut(s)	84
HaeIII	GGCC	7 cut(s)	497, 506, 569, 588, 617, 686, 830
HapII	CCGG	6 cut(s)	44, 69, 299, 522, 719, 731
HgaI	GACGC	3 cut(s)	115, 312, 557
HhaI	GCGC	1 cut(s)	83
Hin1I	GRCGYC	4 cut(s)	81, 107, 304, 549
Hin1II	CATG	3 cut(s)	127, 371, 392
Hin6I	GCGC	1 cut(s)	81
HinP1I	GCGC	1 cut(s)	81
HinfI	GANTC	2 cut(s)	320, 344
HpaII	CCGG	6 cut(s)	44, 69, 299, 522, 719, 731
HphI	GGTGA	4 cut(s)	58, 115, 475, 503
Hpy188I	TCNGA	4 cut(s)	36, 329, 343, 464
Hpy188III	TCNNGA	2 cut(s)	368, 743
Hpy99I	CGWCG	1 cut(s)	744
HpyAV	CCTTC	2 cut(s)	31, 208
HpyCH4III	ACNGT	1 cut(s)	163
HpyCH4IV	ACGT	2 cut(s)	240, 739
HpyCH4V	TGCA	7 cut(s)	182, 358, 454, 557, 638, 704, 767
HpyF3I	CTNAG	2 cut(s)	627, 750
HpySE526I	ACGT	2 cut(s)	240, 739
Hsp92I	GRCGYC	4 cut(s)	81, 107, 304, 549
Hsp92II	CATG	3 cut(s)	127, 371, 392
HspAI	GCGC	1 cut(s)	81
KasI	GGCGCC	1 cut(s)	80
KspI	CCGCGG	1 cut(s)	20
Kzo9I	GATC	7 cut(s)	31, 126, 292, 324, 364, 396, 781
LmnI	GCTCC	2 cut(s)	433, 473
Lsp1109I	GCAGC	9 cut(s)	163, 166, 184, 541, 607, 610, 622, 820, 870
LweI	GCATC	2 cut(s)	106, 736
MabI	ACCWGGT	1 cut(s)	604
MaeI	CTAG	1 cut(s)	837
MaeII	ACGT	2 cut(s)	240, 739
MaeIII	GTNAC	6 cut(s)	46, 103, 236, 545, 714, 757
MalI	GATC	7 cut(s)	33, 128, 294, 326, 366, 398, 783
MboI	GATC	7 cut(s)	31, 126, 292, 324, 364, 396, 781
MboII	GAAGA	3 cut(s)	41, 287, 685
MhlI	GDGCHC	1 cut(s)	430
MluCI	AATT	2 cut(s)	392, 558
Mly113I	GGCGCC	1 cut(s)	81
MlyI	GAGTC	1 cut(s)	329
MmeI	TCCRAC	3 cut(s)	235, 442, 827
MseI	TTAA	2 cut(s)	282, 314
MslI	CAYNNNNRTG	1 cut(s)	512
MspA1I	CMGCKG	6 cut(s)	19, 88, 197, 554, 620, 833
MspI	CCGG	6 cut(s)	44, 69, 299, 522, 719, 731
MspR9I	CCNGG	5 cut(s)	69, 131, 300, 500, 606
Mva1269I	GAATGC	1 cut(s)	706
MvaI	CCWGG	3 cut(s)	131, 500, 606
MvnI	CGCG	1 cut(s)	19
NarI	GGCGCC	1 cut(s)	81
NciI	CCSGG	2 cut(s)	69, 300
NdeI	CATATG	1 cut(s)	52
NdeII	GATC	7 cut(s)	31, 126, 292, 324, 364, 396, 781
NlaIII	CATG	3 cut(s)	127, 371, 392
NlaIV	GGNNCC	4 cut(s)	42, 82, 438, 469
NmeAIII	GCCGAG	1 cut(s)	595
NmuCI	GTSAC	5 cut(s)	46, 103, 236, 545, 757
NotI	GCGGCCGC	1 cut(s)	828
PagI	TCATGA	1 cut(s)	367
PctI	GAATGC	1 cut(s)	706
PfeI	GAWTC	1 cut(s)	344
PfoI	TCCNGGA	1 cut(s)	298
PinAI	ACCGGT	1 cut(s)	43
Ple19I	CGATCG	1 cut(s)	327
PleI	GAGTC	1 cut(s)	328
PluTI	GGCGCC	1 cut(s)	84
PpsI	GAGTC	1 cut(s)	328
Psp124BI	GAGCTC	1 cut(s)	430
Psp6I	CCWGG	3 cut(s)	129, 498, 604
PspFI	CCCAGC	1 cut(s)	84
PspGI	CCWGG	3 cut(s)	129, 498, 604
PspN4I	GGNNCC	4 cut(s)	42, 82, 438, 469
PspPI	GGNCC	1 cut(s)	496
PvuI	CGATCG	1 cut(s)	327
PvuII	CAGCTG	1 cut(s)	88
RsaI	GTAC	1 cut(s)	603
RsaNI	GTAC	1 cut(s)	602
RseI	CAYNNNNRTG	1 cut(s)	512
SacI	GAGCTC	1 cut(s)	430
SacII	CCGCGG	1 cut(s)	20
SaqAI	TTAA	2 cut(s)	282, 314
Sau3AI	GATC	7 cut(s)	31, 126, 292, 324, 364, 396, 781
Sau96I	GGNCC	1 cut(s)	496
SchI	GAGTC	1 cut(s)	329
ScrFI	CCNGG	5 cut(s)	69, 131, 300, 500, 606
SduI	GDGCHC	1 cut(s)	430
SexAI	ACCWGGT	1 cut(s)	604
SfaNI	GCATC	2 cut(s)	106, 736
SfiI	GGCCNNNNNGGCC	1 cut(s)	503
SfoI	GGCGCC	1 cut(s)	82
Sfr303I	CCGCGG	1 cut(s)	20
SgrBI	CCGCGG	1 cut(s)	20
SmiMI	CAYNNNNRTG	1 cut(s)	512
Sse9I	AATT	2 cut(s)	392, 558
SspDI	GGCGCC	1 cut(s)	80
SspMI	CTAG	1 cut(s)	837
SstI	GAGCTC	1 cut(s)	430
StyD4I	CCNGG	5 cut(s)	67, 129, 298, 498, 604
StyI	CCWWGG	1 cut(s)	111
TaaI	ACNGT	1 cut(s)	163
TaiI	ACGT	2 cut(s)	243, 742
TaqI	TCGA	3 cut(s)	323, 399, 742
TasI	AATT	2 cut(s)	392, 558
TfiI	GAWTC	1 cut(s)	344
Tru1I	TTAA	2 cut(s)	282, 314
Tru9I	TTAA	2 cut(s)	282, 314
TscAI	CASTG	2 cut(s)	589, 828
TseFI	GTSAC	5 cut(s)	46, 103, 236, 545, 757
TseI	GCWGC	9 cut(s)	176, 179, 197, 554, 620, 623, 635, 833, 858
Tsp45I	GTSAC	5 cut(s)	46, 103, 236, 545, 757
TspDTI	ATGAA	2 cut(s)	384, 405
TspGWI	ACGGA	1 cut(s)	332
TspRI	CASTG	2 cut(s)	589, 828
XspI	CTAG	1 cut(s)	837

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.