Rmu_sc0010928.1_g000016

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0010928.1
OG0007178
Physical Location & Seq
Reverse (-)
76966 .. 78035
1070 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0010928.1_g000016.1.cds

Sequence Viewer

Length: 710 bp
gttcagggagaggtggcggacaaggtggtggccccaaaggacgcagccacgatgcagacggcagaaagcgaagccgtcgggaaaacctcaaacgtggcgctgccgcgactatgcagtccgctgctgcacaaaatgaaagggctggtcatgtgggaccaaatgacatgaatattgtccaagatgacgttaccataacagagacggatcttcccgaccgccgtattttcacggagtcagtcggtggacaggttgttggtgaatatatccagagagctcctttggcagcaccctccactgttcaagttagtggcggtcaaatcaccataggtgaagccttggaggctactgctatgacggccggaaagaagcccgtggactggagtgacgatgctgcaatccaagcagctgagattagagccaccgggcgacccagcattgtacctggtggtgtggctgcggaggctcaatctgccgcaaccctcaacgctcggactatgcgtaatgaggacaagaccaaacttggcgatattcttgcgggtgcaaccgcaaaactaccagatcacaaaccagcaacactgcgagacgccgagggtgtgacagttgcagagatgcgaaatgatcgatatctgaatacacatccaaccggtgtggcagcttcggtggctgcagctgctaggctaaaccaggatgatagaaacataccaaagtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SMP

Protein Analysis

235

Amino Acids

24.45

Weight (kDa)

8.0

Isoelectric Point (pI)

37.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 114
AccII CGCG 1 cut(s) 106
AciI CCGC 9 cut(s) 17, 104, 119, 216, 311, 457, 473, 535, 545
AclWI GGATC 1 cut(s) 212
AcoI YGGCCR 1 cut(s) 356
AcyI GRCGYC 1 cut(s) 584
AfaI GTAC 1 cut(s) 440
AfiI CCNNNNNNNGG 1 cut(s) 377
AgeI ACCGGT 1 cut(s) 643
AgsI TTSAA 1 cut(s) 301
AjnI CCWGG 2 cut(s) 441, 683
AluBI AGCT 4 cut(s) 274, 406, 655, 670
AluI AGCT 4 cut(s) 274, 406, 655, 670
Alw21I GWGCWC 1 cut(s) 276
Alw26I GTCTC 2 cut(s) 193, 575
AlwI GGATC 1 cut(s) 212
AoxI GGCC 2 cut(s) 30, 356
AsiGI ACCGGT 1 cut(s) 643
AspLEI GCGC 1 cut(s) 100
AspS9I GGNCC 2 cut(s) 31, 154
AsuC2I CCSGG 1 cut(s) 423
AsuHPI GGTGA 3 cut(s) 268, 312, 340
AvaII GGWCC 1 cut(s) 154
BanII GRGCYC 1 cut(s) 276
Bbv12I GWGCWC 1 cut(s) 276
BceAI ACGGC 4 cut(s) 59, 75, 203, 371
BcgI CGANNNNNNTGC 2 cut(s) 514, 548
BciT130I CCWGG 2 cut(s) 443, 685
BcnI CCSGG 1 cut(s) 423
BcoDI GTCTC 2 cut(s) 193, 575
BfaI CTAG 1 cut(s) 674
BfmI CTRYAG 1 cut(s) 665
BfoI RGCGCY 1 cut(s) 101
BglI GCCNNNNNGGC 1 cut(s) 340
Bme1390I CCNGG 3 cut(s) 423, 443, 685
Bme18I GGWCC 1 cut(s) 154
BmgT120I GGNCC 2 cut(s) 31, 154
BmiI GGNNCC 2 cut(s) 33, 155
BmrFI CCNGG 3 cut(s) 423, 443, 685
BmsI GCATC 3 cut(s) 42, 378, 599
BpmI CTGGAG 1 cut(s) 399
BpuMI CCSGG 1 cut(s) 423
Bsa29I ATCGAT 1 cut(s) 621
BsaBI GATNNNNATC 1 cut(s) 623
BsaHI GRCGYC 1 cut(s) 584
BsaJI CCNNGG 3 cut(s) 335, 371, 587
BsaWI WCCGGW 1 cut(s) 643
Bsc4I CCNNNNNNNGG 1 cut(s) 377
Bse118I RCCGGY 1 cut(s) 643
Bse1I ACTGG 1 cut(s) 382
Bse8I GATNNNNATC 1 cut(s) 623
BseBI CCWGG 2 cut(s) 443, 685
BseCI ATCGAT 1 cut(s) 621
BseDI CCNNGG 3 cut(s) 335, 371, 587
BseGI GGATG 2 cut(s) 636, 693
BseJI GATNNNNATC 1 cut(s) 623
BseLI CCNNNNNNNGG 1 cut(s) 377
BseMII CTCAG 1 cut(s) 398
BseNI ACTGG 1 cut(s) 382
BseX3I CGGCCG 1 cut(s) 356
BseYI CCCAGC 1 cut(s) 430
BsgI GTGCAG 1 cut(s) 110
Bsh1236I CGCG 1 cut(s) 106
Bsh1285I CGRYCG 2 cut(s) 216, 359
BshFI GGCC 2 cut(s) 32, 358
BshTI ACCGGT 1 cut(s) 643
BshVI ATCGAT 1 cut(s) 621
BsiEI CGRYCG 2 cut(s) 216, 359
BsiHKAI GWGCWC 1 cut(s) 276
BsiSI CCGG 3 cut(s) 359, 422, 644
BslFI GGGAC 1 cut(s) 167
BslI CCNNNNNNNGG 1 cut(s) 377
BsmAI GTCTC 2 cut(s) 193, 575
BsmBI CGTCTC 2 cut(s) 193, 575
BsmFI GGGAC 1 cut(s) 167
BsnI GGCC 2 cut(s) 32, 358
Bsp1286I GDGCHC 1 cut(s) 276
Bsp143I GATC 3 cut(s) 204, 558, 618
BspACI CCGC 9 cut(s) 17, 104, 119, 216, 311, 457, 473, 535, 545
BspANI GGCC 2 cut(s) 32, 358
BspCNI CTCAG 1 cut(s) 399
BspDI ATCGAT 1 cut(s) 621
BspFNI CGCG 1 cut(s) 106
BspLI GGNNCC 2 cut(s) 33, 155
BspMAI CTGCAG 1 cut(s) 669
BspPI GGATC 1 cut(s) 212
BsrFI RCCGGY 1 cut(s) 643
BsrI ACTGG 1 cut(s) 382
BssAI RCCGGY 1 cut(s) 643
BssECI CCNNGG 3 cut(s) 335, 371, 587
BssMI GATC 3 cut(s) 204, 558, 618
BssNI GRCGYC 1 cut(s) 584
BssT1I CCWWGG 1 cut(s) 335
Bst2UI CCWGG 2 cut(s) 443, 685
Bst4CI ACNGT 2 cut(s) 297, 600
BstACI GRCGYC 1 cut(s) 584
BstDEI CTNAG 1 cut(s) 407
BstDSI CCRYGG 1 cut(s) 371
BstF5I GGATG 2 cut(s) 636, 693
BstFNI CGCG 1 cut(s) 106
BstH2I RGCGCY 1 cut(s) 101
BstHHI GCGC 1 cut(s) 100
BstKTI GATC 3 cut(s) 207, 561, 621
BstMAI GTCTC 2 cut(s) 193, 575
BstMBI GATC 3 cut(s) 204, 558, 618
BstMCI CGRYCG 2 cut(s) 216, 359
BstMWI GCNNNNNNNGC 8 cut(s) 280, 340, 355, 400, 460, 469, 661, 670
BstNI CCWGG 2 cut(s) 443, 685
BstSCI CCNGG 3 cut(s) 421, 441, 683
BstSFI CTRYAG 1 cut(s) 665
BstUI CGCG 1 cut(s) 106
BstX2I RGATCY 1 cut(s) 204
BstYI RGATCY 1 cut(s) 204
BstZI CGGCCG 1 cut(s) 356
Bsu15I ATCGAT 1 cut(s) 621
BsuRI GGCC 2 cut(s) 32, 358
BsuTUI ATCGAT 1 cut(s) 621
BtgI CCRYGG 1 cut(s) 371
BtsCI GGATG 2 cut(s) 636, 693
BtsI GCAGTG 1 cut(s) 574
BtsIMutI CAGTG 2 cut(s) 293, 574
CfoI GCGC 1 cut(s) 100
Cfr10I RCCGGY 1 cut(s) 643
Cfr13I GGNCC 2 cut(s) 31, 154
ClaI ATCGAT 1 cut(s) 621
CseI GACGC 2 cut(s) 50, 592
CsiI ACCWGGT 1 cut(s) 441
Csp6I GTAC 1 cut(s) 439
CspAI ACCGGT 1 cut(s) 643
CspCI CAANNNNNGTGG 2 cut(s) 629, 664
CviAII CATG 2 cut(s) 148, 165
CviQI GTAC 1 cut(s) 439
DdeI CTNAG 1 cut(s) 407
DpnI GATC 3 cut(s) 206, 560, 620
DpnII GATC 3 cut(s) 204, 558, 618
DrdI GACNNNNNNGTC 1 cut(s) 114
DseDI GACNNNNNNGTC 1 cut(s) 114
EaeI YGGCCR 1 cut(s) 356
EagI CGGCCG 1 cut(s) 356
EciI GGCGGA 1 cut(s) 32
Ecl136II GAGCTC 1 cut(s) 274
EclXI CGGCCG 1 cut(s) 356
Eco130I CCWWGG 1 cut(s) 335
Eco24I GRGCYC 1 cut(s) 276
Eco32I GATATC 1 cut(s) 625
Eco47I GGWCC 1 cut(s) 154
Eco52I CGGCCG 1 cut(s) 356
Eco53kI GAGCTC 1 cut(s) 274
EcoICRI GAGCTC 1 cut(s) 274
EcoRII CCWGG 2 cut(s) 441, 683
EcoRV GATATC 1 cut(s) 625
EcoT14I CCWWGG 1 cut(s) 335
EcoT38I GRGCYC 1 cut(s) 276
ErhI CCWWGG 1 cut(s) 335
Esp3I CGTCTC 2 cut(s) 193, 575
FaeI CATG 2 cut(s) 151, 168
FaiI YATR 9 cut(s) 112, 149, 166, 193, 263, 325, 352, 496, 700
FaqI GGGAC 1 cut(s) 167
FatI CATG 2 cut(s) 147, 164
FauI CCCGC 1 cut(s) 528
FokI GGATG 2 cut(s) 623, 700
FriOI GRGCYC 1 cut(s) 276
FspBI CTAG 1 cut(s) 674
GlaI GCGC 1 cut(s) 99
GsaI CCCAGC 1 cut(s) 434
GsuI CTGGAG 1 cut(s) 399
HaeII RGCGCY 1 cut(s) 101
HaeIII GGCC 2 cut(s) 32, 358
HapII CCGG 3 cut(s) 359, 422, 644
HgaI GACGC 2 cut(s) 50, 592
HhaI GCGC 1 cut(s) 100
Hin1I GRCGYC 1 cut(s) 584
Hin1II CATG 2 cut(s) 151, 168
Hin6I GCGC 1 cut(s) 98
HinP1I GCGC 1 cut(s) 98
HinfI GANTC 1 cut(s) 232
HpaII CCGG 3 cut(s) 359, 422, 644
HphI GGTGA 3 cut(s) 268, 312, 340
Hpy166II GTNNAC 2 cut(s) 244, 375
Hpy188I TCNGA 2 cut(s) 491, 629
Hpy188III TCNNGA 3 cut(s) 79, 211, 267
Hpy8I GTNNAC 2 cut(s) 244, 375
Hpy99I CGWCG 1 cut(s) 80
HpyCH4III ACNGT 2 cut(s) 297, 600
HpyCH4IV ACGT 2 cut(s) 93, 185
HpyCH4V TGCA 7 cut(s) 55, 114, 127, 394, 541, 604, 667
HpyF10VI GCNNNNNNNGC 8 cut(s) 280, 340, 355, 400, 460, 469, 661, 670
HpyF3I CTNAG 1 cut(s) 407
HpySE526I ACGT 2 cut(s) 93, 185
Hsp92I GRCGYC 1 cut(s) 584
Hsp92II CATG 2 cut(s) 151, 168
HspAI GCGC 1 cut(s) 98
Kzo9I GATC 3 cut(s) 204, 558, 618
LmnI GCTCC 1 cut(s) 279
LweI GCATC 3 cut(s) 42, 378, 599
MabI ACCWGGT 1 cut(s) 441
MaeI CTAG 1 cut(s) 674
MaeII ACGT 2 cut(s) 93, 185
MaeIII GTNAC 3 cut(s) 186, 382, 594
MalI GATC 3 cut(s) 206, 560, 620
MboI GATC 3 cut(s) 204, 558, 618
MboII GAAGA 1 cut(s) 199
MflI RGATCY 1 cut(s) 204
MhlI GDGCHC 1 cut(s) 276
MlyI GAGTC 1 cut(s) 241
MmeI TCCRAC 1 cut(s) 664
MnlI CCTC 8 cut(s) 4, 97, 300, 333, 453, 490, 498, 582
MspA1I CMGCKG 3 cut(s) 121, 406, 670
MspI CCGG 3 cut(s) 359, 422, 644
MspR9I CCNGG 3 cut(s) 423, 443, 685
MvaI CCWGG 2 cut(s) 443, 685
MvnI CGCG 1 cut(s) 106
MwoI GCNNNNNNNGC 8 cut(s) 280, 340, 355, 400, 460, 469, 661, 670
NciI CCSGG 1 cut(s) 423
NdeII GATC 3 cut(s) 204, 558, 618
NlaIII CATG 2 cut(s) 151, 168
NlaIV GGNNCC 2 cut(s) 33, 155
NmeAIII GCCGAG 1 cut(s) 612
NmuCI GTSAC 2 cut(s) 382, 594
PcsI WCGNNNNNNNCGW 1 cut(s) 495
PinAI ACCGGT 1 cut(s) 643
PleI GAGTC 1 cut(s) 240
PpsI GAGTC 1 cut(s) 240
Psp124BI GAGCTC 1 cut(s) 276
Psp6I CCWGG 2 cut(s) 441, 683
PspFI CCCAGC 1 cut(s) 430
PspGI CCWGG 2 cut(s) 441, 683
PspN4I GGNNCC 2 cut(s) 33, 155
PspPI GGNCC 2 cut(s) 31, 154
PstI CTGCAG 1 cut(s) 669
PsuI RGATCY 1 cut(s) 204
PvuII CAGCTG 2 cut(s) 406, 670
RsaI GTAC 1 cut(s) 440
RsaNI GTAC 1 cut(s) 439
SacI GAGCTC 1 cut(s) 276
Sau3AI GATC 3 cut(s) 204, 558, 618
Sau96I GGNCC 2 cut(s) 31, 154
SchI GAGTC 1 cut(s) 241
ScrFI CCNGG 3 cut(s) 423, 443, 685
SduI GDGCHC 1 cut(s) 276
SexAI ACCWGGT 1 cut(s) 441
SfaNI GCATC 3 cut(s) 42, 378, 599
SfcI CTRYAG 1 cut(s) 665
SinI GGWCC 1 cut(s) 154
SsiI CCGC 9 cut(s) 17, 104, 119, 216, 311, 457, 473, 535, 545
SspI AATATT 1 cut(s) 171
SspMI CTAG 1 cut(s) 674
SstI GAGCTC 1 cut(s) 276
StyD4I CCNGG 3 cut(s) 421, 441, 683
StyI CCWWGG 1 cut(s) 335
TaaI ACNGT 2 cut(s) 297, 600
TaiI ACGT 2 cut(s) 96, 188
TaqI TCGA 1 cut(s) 621
TauI GCSGC 2 cut(s) 106, 475
TscAI CASTG 2 cut(s) 300, 581
TseFI GTSAC 2 cut(s) 382, 594
Tsp45I GTSAC 2 cut(s) 382, 594
TspDTI ATGAA 2 cut(s) 149, 181
TspGWI ACGGA 2 cut(s) 217, 244
TspRI CASTG 2 cut(s) 300, 581
VpaK11BI GGWCC 1 cut(s) 154
XspI CTAG 1 cut(s) 674
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.