Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8111080.1

Orthogroup ID

OG0007178

Physical Location & Seq

Genomic Coordinates Reverse (-)

219 .. 611

Gene Structure 393 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8111080.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

gccgaggttagagccactggccgaaccaacattgtacccggtggtgtcgctgccgcagctcaatcggcggcaactctcaatgctagggctacgcgtgacgaggacaagacaaaacttgctgatatccttgcggatgcaacttcaaaattaccggcagacaaaccggcgacacgaagggatgctgagggggtgacgggtgcagaaatgcgaaatgatccatatctgaccacccatcccaccggtgtggcagcttcggtggctgccgctgctaggctcaaccagggtaatagcattgaaggaacaaaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SMP

Protein Analysis

102

Amino Acids

10.37

Weight (kDa)

8.38

Isoelectric Point (pI)

25.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007178)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27980
fragaria_vesca	FvH4_6g03840 FvH4_6g03841
malus_domestica	MD04G1217900.v1.1 MD12G1235300.v1.1
prunus_persica	Prupe.6G337900_v2.0.a1 Prupe.6G337900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0452411
rosa_laevigata	RLG00000025605
rosa_multiflora	Rmu_co8111080.1_g000001 Rmu_sc0010928.1_g000016
rosa_roxburghii	Rroxscaffold_6G00429430 Rroxscaffold_6G00429940
rosa_rugosa	Rorug02G0640500 Rorug02G0640600
rosa_samantha	Rh3AG042400 Rh3AG042500 Rh3BG043900 Rh3BG044000 Rh3CG042700 Rh3CG042800 Rh3DG043400 Rh3DG043500
rosa_wichuraiana	Rw3G003250 Rw3G003260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	94
AciI	CCGC	4 cut(s)	54, 68, 131, 264
AclWI	GGATC	1 cut(s)	209
AcoI	YGGCCR	1 cut(s)	19
AfaI	GTAC	1 cut(s)	36
AfiI	CCNNNNNNNGG	1 cut(s)	270
AflIII	ACRYGT	1 cut(s)	92
AgeI	ACCGGT	1 cut(s)	239
AgsI	TTSAA	2 cut(s)	144, 296
AjnI	CCWGG	1 cut(s)	279
AleI	CACNNNNGTG	1 cut(s)	242
AluBI	AGCT	2 cut(s)	59, 251
AluI	AGCT	2 cut(s)	59, 251
AlwI	GGATC	1 cut(s)	209
AoxI	GGCC	1 cut(s)	19
ApeKI	GCWGC	5 cut(s)	50, 56, 248, 260, 266
AsiGI	ACCGGT	1 cut(s)	239
AsuC2I	CCSGG	1 cut(s)	39
AsuHPI	GGTGA	1 cut(s)	202
BbvCI	CCTCAGC	1 cut(s)	183
BbvI	GCAGC	5 cut(s)	37, 68, 247, 253, 260
BccI	CCATC	1 cut(s)	240
BcgI	CGANNNNNNTGC	2 cut(s)	45, 79
BciT130I	CCWGG	1 cut(s)	281
BcnI	CCSGG	1 cut(s)	39
BfaI	CTAG	2 cut(s)	84, 270
BisI	GCNGC	8 cut(s)	51, 54, 57, 69, 249, 261, 264, 267
BlsI	GCNGC	8 cut(s)	52, 55, 58, 70, 250, 262, 265, 268
Bme1390I	CCNGG	2 cut(s)	39, 281
BmrFI	CCNGG	2 cut(s)	39, 281
BmsI	GCATC	2 cut(s)	124, 169
Bpu10I	CCTNAGC	1 cut(s)	183
BpuMI	CCSGG	1 cut(s)	39
BsaBI	GATNNNNATC	1 cut(s)	219
BsaJI	CCNNGG	2 cut(s)	3, 280
BsaWI	WCCGGW	1 cut(s)	239
Bsc4I	CCNNNNNNNGG	1 cut(s)	270
Bse118I	RCCGGY	3 cut(s)	151, 163, 239
Bse1I	ACTGG	1 cut(s)	22
Bse8I	GATNNNNATC	1 cut(s)	219
BseBI	CCWGG	1 cut(s)	281
BseDI	CCNNGG	2 cut(s)	3, 280
BseGI	GGATG	3 cut(s)	139, 184, 232
BseJI	GATNNNNATC	1 cut(s)	219
BseLI	CCNNNNNNNGG	1 cut(s)	270
BseMII	CTCAG	1 cut(s)	174
BseNI	ACTGG	1 cut(s)	22
BseXI	GCAGC	5 cut(s)	37, 68, 247, 253, 260
BsgI	GTGCAG	1 cut(s)	219
Bsh1236I	CGCG	1 cut(s)	94
BshFI	GGCC	1 cut(s)	21
BshTI	ACCGGT	1 cut(s)	239
BsiSI	CCGG	4 cut(s)	39, 152, 164, 240
BslI	CCNNNNNNNGG	1 cut(s)	270
BsnI	GGCC	1 cut(s)	21
Bsp143I	GATC	1 cut(s)	214
BspACI	CCGC	4 cut(s)	54, 68, 131, 264
BspANI	GGCC	1 cut(s)	21
BspCNI	CTCAG	1 cut(s)	175
BspFNI	CGCG	1 cut(s)	94
BspPI	GGATC	1 cut(s)	209
BsrFI	RCCGGY	3 cut(s)	151, 163, 239
BsrI	ACTGG	1 cut(s)	22
BssAI	RCCGGY	3 cut(s)	151, 163, 239
BssECI	CCNNGG	2 cut(s)	3, 280
BssMI	GATC	1 cut(s)	214
Bst2UI	CCWGG	1 cut(s)	281
BstDEI	CTNAG	1 cut(s)	183
BstF5I	GGATG	3 cut(s)	139, 184, 232
BstFNI	CGCG	1 cut(s)	94
BstKTI	GATC	1 cut(s)	217
BstMBI	GATC	1 cut(s)	214
BstMWI	GCNNNNNNNGC	4 cut(s)	56, 65, 257, 266
BstNI	CCWGG	1 cut(s)	281
BstSCI	CCNGG	2 cut(s)	37, 279
BstUI	CGCG	1 cut(s)	94
BstV1I	GCAGC	5 cut(s)	37, 68, 247, 253, 260
BstXI	CCANNNNNNTGG	1 cut(s)	244
BsuRI	GGCC	1 cut(s)	21
BtsCI	GGATG	3 cut(s)	139, 184, 232
BtsIMutI	CAGTG	1 cut(s)	15
Cfr10I	RCCGGY	3 cut(s)	151, 163, 239
Csp6I	GTAC	1 cut(s)	35
CspAI	ACCGGT	1 cut(s)	239
CviJI	RGCY	7 cut(s)	14, 21, 59, 89, 251, 260, 274
CviKI_1	RGCY	7 cut(s)	14, 21, 59, 89, 251, 260, 274
CviQI	GTAC	1 cut(s)	35
DdeI	CTNAG	1 cut(s)	183
DpnI	GATC	1 cut(s)	216
DpnII	GATC	1 cut(s)	214
EaeI	YGGCCR	1 cut(s)	19
Eco32I	GATATC	1 cut(s)	124
EcoRII	CCWGG	1 cut(s)	279
EcoRV	GATATC	1 cut(s)	124
FaiI	YATR	1 cut(s)	220
Fnu4HI	GCNGC	8 cut(s)	51, 54, 57, 69, 249, 261, 264, 267
FokI	GGATG	3 cut(s)	146, 191, 219
Fsp4HI	GCNGC	8 cut(s)	51, 54, 57, 69, 249, 261, 264, 267
FspBI	CTAG	2 cut(s)	84, 270
GluI	GCNGC	8 cut(s)	51, 54, 57, 69, 249, 261, 264, 267
HaeIII	GGCC	1 cut(s)	21
HapII	CCGG	4 cut(s)	39, 152, 164, 240
HpaII	CCGG	4 cut(s)	39, 152, 164, 240
HphI	GGTGA	1 cut(s)	202
Hpy188I	TCNGA	1 cut(s)	225
HpyAV	CCTTC	2 cut(s)	168, 290
HpyCH4V	TGCA	2 cut(s)	137, 200
HpyF10VI	GCNNNNNNNGC	4 cut(s)	56, 65, 257, 266
HpyF3I	CTNAG	1 cut(s)	183
Kzo9I	GATC	1 cut(s)	214
LpnPI	CCDG	7 cut(s)	3, 52, 165, 177, 253, 266, 293
Lsp1109I	GCAGC	5 cut(s)	37, 68, 247, 253, 260
LweI	GCATC	2 cut(s)	124, 169
MaeI	CTAG	2 cut(s)	84, 270
MaeIII	GTNAC	2 cut(s)	95, 190
MalI	GATC	1 cut(s)	216
MboI	GATC	1 cut(s)	214
MluCI	AATT	1 cut(s)	146
MluI	ACGCGT	1 cut(s)	92
MnlI	CCTC	2 cut(s)	94, 178
MslI	CAYNNNNRTG	1 cut(s)	242
MspA1I	CMGCKG	1 cut(s)	266
MspI	CCGG	4 cut(s)	39, 152, 164, 240
MspR9I	CCNGG	2 cut(s)	39, 281
MvaI	CCWGG	1 cut(s)	281
MvnI	CGCG	1 cut(s)	94
MwoI	GCNNNNNNNGC	4 cut(s)	56, 65, 257, 266
NciI	CCSGG	1 cut(s)	39
NdeII	GATC	1 cut(s)	214
NmeAIII	GCCGAG	1 cut(s)	28
NmuCI	GTSAC	2 cut(s)	95, 190
OliI	CACNNNNGTG	1 cut(s)	242
PinAI	ACCGGT	1 cut(s)	239
PkrI	GCNGC	8 cut(s)	52, 55, 58, 70, 250, 262, 265, 268
Psp6I	CCWGG	1 cut(s)	279
PspGI	CCWGG	1 cut(s)	279
RsaI	GTAC	1 cut(s)	36
RsaNI	GTAC	1 cut(s)	35
RseI	CAYNNNNRTG	1 cut(s)	242
SatI	GCNGC	8 cut(s)	51, 54, 57, 69, 249, 261, 264, 267
Sau3AI	GATC	1 cut(s)	214
ScrFI	CCNGG	2 cut(s)	39, 281
SetI	ASST	3 cut(s)	9, 61, 253
SfaNI	GCATC	2 cut(s)	124, 169
SgrAI	CRCCGGYG	1 cut(s)	239
SmiMI	CAYNNNNRTG	1 cut(s)	242
Sse9I	AATT	1 cut(s)	146
SsiI	CCGC	4 cut(s)	54, 68, 131, 264
SspMI	CTAG	2 cut(s)	84, 270
StyD4I	CCNGG	2 cut(s)	37, 279
TasI	AATT	1 cut(s)	146
TauI	GCSGC	3 cut(s)	56, 71, 266
TscAI	CASTG	1 cut(s)	22
TseFI	GTSAC	2 cut(s)	95, 190
TseI	GCWGC	5 cut(s)	50, 56, 248, 260, 266
Tsp45I	GTSAC	2 cut(s)	95, 190
TspRI	CASTG	1 cut(s)	22
XspI	CTAG	2 cut(s)	84, 270

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.