Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0007178

Physical Location & Seq

Genomic Coordinates Reverse (-)

75275012 .. 75276627

Gene Structure 1616 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0640500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGGCCGGACTCAGCCGCCTCGAACTGGCCGCCGCGTCGCTGCTGAAACGACGCAGTGTCGGCCTCCTCGCGCCGCCGCGCCGAGCCTACGGATCGGCCGCCGCGGCTCAGCTGGACTATTACTCCGACGAGGAAGAAGAGCATCAAACGGCGGTGGTGGACTCTGCCGGGTGGATCCCACGGAGAGGGATACATTGGGTGCTGATAGGAGATCGAGGTGCGAAGAAGCACTTGTACGCCGAGAGGCTCTCGAAGCTTCTGGAAGTTCCCCACATTTCTATGGGCACCCTCGTCCGCCAGGAGCTCAACCCTCGCTCTTCTCTCTACAAGCAGATTGCGAATGCGGTGAATGAAGGAAAGCTTGTTCAGGATGAAGTGATTTTCGCATTGTTGTCGAAAAGGCTCGAGGAAGGATACTACAGAGGTGAAAATGGATTCATTCTTGATGGGATTCCTCGAACTAGAATTCAAGCTGAGTTAGTAGACCAAATTGCGGAAATTGATCTAGTAGTGAATTTCAAATCCACTGATGACTTGGTGAAGAAGAATCTAGGAACTGGAAGCTTGGCTCTTAGTCAAGATTATCTGAGGATGAGTAACTCTATGCATGATGTAAATATGCAGCAAGAACAACTGAAATCCACAAATGCTGAGCAGAGCAAGTTGTTGGAGGATTACTACAGAAAACAGAACAAACTCATAGATTTTCACATGAAAGGTGCCCCCGGAGAAACCTGGAAGGGCCTGCTGGCTGCATTGCATCTTCAGCATATAAATGCTGTCAGTTCTTCCCAGAAGCTAACTGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SMP

Protein Analysis

269

Amino Acids

30.09

Weight (kDa)

7.9

Isoelectric Point (pI)

43.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADK	PF00406	68 - 232	1.2e-22	Adenylate kinase
AAA_17	PF13207	79 - 180	6.4e-11	AAA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007178)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27980
fragaria_vesca	FvH4_6g03840 FvH4_6g03841
malus_domestica	MD04G1217900.v1.1 MD12G1235300.v1.1
prunus_persica	Prupe.6G337900_v2.0.a1 Prupe.6G337900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0452411
rosa_laevigata	RLG00000025605
rosa_multiflora	Rmu_co8111080.1_g000001 Rmu_sc0010928.1_g000016
rosa_roxburghii	Rroxscaffold_6G00429430 Rroxscaffold_6G00429940
rosa_rugosa	Rorug02G0640500 Rorug02G0640600
rosa_samantha	Rh3AG042400 Rh3AG042500 Rh3BG043900 Rh3BG044000 Rh3CG042700 Rh3CG042800 Rh3DG043400 Rh3DG043500
rosa_wichuraiana	Rw3G003250 Rw3G003260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	284, 719
AccI	GTMKAC	1 cut(s)	483
AccII	CGCG	4 cut(s)	35, 71, 79, 104
AclWI	GGATC	3 cut(s)	100, 169, 182
AcoI	YGGCCR	3 cut(s)	3, 27, 96
AcsI	RAATTY	2 cut(s)	465, 514
AcuI	CTGAAG	1 cut(s)	749
AfaI	GTAC	1 cut(s)	236
AfiI	CCNNNNNNNGG	3 cut(s)	25, 185, 493
AgsI	TTSAA	2 cut(s)	470, 520
AhdI	GACNNNNNGTC	1 cut(s)	56
AjnI	CCWGG	2 cut(s)	297, 734
AloI	GAACNNNNNNTCC	2 cut(s)	348, 380
AluBI	AGCT	7 cut(s)	112, 256, 304, 361, 473, 564, 799
AluI	AGCT	7 cut(s)	112, 256, 304, 361, 473, 564, 799
Alw21I	GWGCWC	1 cut(s)	306
AlwI	GGATC	3 cut(s)	100, 169, 182
Ama87I	CYCGRG	1 cut(s)	404
AoxI	GGCC	5 cut(s)	3, 27, 61, 96, 742
ApeKI	GCWGC	3 cut(s)	40, 622, 752
ApoI	RAATTY	2 cut(s)	465, 514
AspLEI	GCGC	2 cut(s)	73, 81
AspS9I	GGNCC	1 cut(s)	742
AsuC2I	CCSGG	2 cut(s)	169, 726
AsuHPI	GGTGA	3 cut(s)	358, 437, 550
AvaI	CYCGRG	1 cut(s)	404
BaeGI	GKGCMC	2 cut(s)	287, 724
BamHI	GGATCC	1 cut(s)	174
BanI	GGYRCC	2 cut(s)	284, 719
BanII	GRGCYC	1 cut(s)	306
BarI	GAAGNNNNNNTAC	2 cut(s)	218, 250
Bbv12I	GWGCWC	1 cut(s)	306
BbvI	GCAGC	3 cut(s)	27, 634, 739
BccI	CCATC	1 cut(s)	440
BceAI	ACGGC	1 cut(s)	165
BcgI	CGANNNNNNTGC	2 cut(s)	375, 409
BciT130I	CCWGG	2 cut(s)	299, 736
BciVI	GTATCC	2 cut(s)	183, 407
BcnI	CCSGG	2 cut(s)	169, 726
BfaI	CTAG	3 cut(s)	462, 506, 551
BfmI	CTRYAG	2 cut(s)	418, 679
BfuI	GTATCC	2 cut(s)	183, 407
BglI	GCCNNNNNGGC	1 cut(s)	104
BlpI	GCTNAGC	2 cut(s)	108, 651
Bme1390I	CCNGG	4 cut(s)	169, 299, 726, 736
BmeRI	GACNNNNNGTC	1 cut(s)	56
BmeT110I	CYCGRG	1 cut(s)	404
BmgT120I	GGNCC	1 cut(s)	742
BmiI	GGNNCC	3 cut(s)	176, 286, 721
BmrFI	CCNGG	4 cut(s)	169, 299, 726, 736
BmsI	GCATC	2 cut(s)	151, 769
BplI	GAGNNNNNCTC	2 cut(s)	233, 265
Bpu1102I	GCTNAGC	2 cut(s)	108, 651
BpuMI	CCSGG	2 cut(s)	169, 726
BsaJI	CCNNGG	3 cut(s)	102, 179, 724
BsaXI	ACNNNNNCTCC	2 cut(s)	107, 137
Bsc4I	CCNNNNNNNGG	3 cut(s)	25, 185, 493
Bse1I	ACTGG	2 cut(s)	30, 562
Bse3DI	GCAATG	1 cut(s)	755
BseBI	CCWGG	2 cut(s)	299, 736
BseDI	CCNNGG	3 cut(s)	102, 179, 724
BseGI	GGATG	2 cut(s)	376, 597
BseLI	CCNNNNNNNGG	3 cut(s)	25, 185, 493
BseMI	GCAATG	1 cut(s)	755
BseMII	CTCAG	5 cut(s)	25, 122, 465, 578, 642
BseNI	ACTGG	2 cut(s)	30, 562
BseRI	GAGGAG	1 cut(s)	56
BseSI	GKGCMC	2 cut(s)	287, 724
BseX3I	CGGCCG	1 cut(s)	96
BseXI	GCAGC	3 cut(s)	27, 634, 739
Bsh1236I	CGCG	4 cut(s)	35, 71, 79, 104
Bsh1285I	CGRYCG	1 cut(s)	99
BshFI	GGCC	5 cut(s)	5, 29, 63, 98, 744
BshNI	GGYRCC	2 cut(s)	284, 719
BsiEI	CGRYCG	1 cut(s)	99
BsiHKAI	GWGCWC	1 cut(s)	306
BsiHKCI	CYCGRG	1 cut(s)	404
BsiSI	CCGG	3 cut(s)	6, 168, 726
BslI	CCNNNNNNNGG	3 cut(s)	25, 185, 493
BsmI	GAATGC	1 cut(s)	346
BsnI	GGCC	5 cut(s)	5, 29, 63, 98, 744
BsoBI	CYCGRG	1 cut(s)	404
Bsp1286I	GDGCHC	3 cut(s)	287, 306, 724
Bsp143I	GATC	4 cut(s)	92, 174, 211, 502
Bsp1720I	GCTNAGC	2 cut(s)	108, 651
BspANI	GGCC	5 cut(s)	5, 29, 63, 98, 744
BspCNI	CTCAG	5 cut(s)	24, 121, 466, 579, 643
BspFNI	CGCG	4 cut(s)	35, 71, 79, 104
BspLI	GGNNCC	3 cut(s)	176, 286, 721
BspPI	GGATC	3 cut(s)	100, 169, 182
BspQI	GCTCTTC	2 cut(s)	132, 322
BspT107I	GGYRCC	2 cut(s)	284, 719
BsrDI	GCAATG	1 cut(s)	755
BsrI	ACTGG	2 cut(s)	30, 562
BssECI	CCNNGG	3 cut(s)	102, 179, 724
BssMI	GATC	4 cut(s)	92, 174, 211, 502
Bst2UI	CCWGG	2 cut(s)	299, 736
Bst6I	CTCTTC	2 cut(s)	132, 322
BstC8I	GCNNGC	2 cut(s)	746, 750
BstDEI	CTNAG	6 cut(s)	11, 108, 474, 572, 587, 651
BstDSI	CCRYGG	2 cut(s)	102, 179
BstF5I	GGATG	2 cut(s)	376, 597
BstFNI	CGCG	4 cut(s)	35, 71, 79, 104
BstHHI	GCGC	2 cut(s)	73, 81
BstKTI	GATC	4 cut(s)	95, 177, 214, 505
BstMBI	GATC	4 cut(s)	92, 174, 211, 502
BstMCI	CGRYCG	1 cut(s)	99
BstMWI	GCNNNNNNNGC	4 cut(s)	60, 104, 253, 766
BstNI	CCWGG	2 cut(s)	299, 736
BstSCI	CCNGG	4 cut(s)	167, 297, 724, 734
BstSFI	CTRYAG	2 cut(s)	418, 679
BstSLI	GKGCMC	2 cut(s)	287, 724
BstUI	CGCG	4 cut(s)	35, 71, 79, 104
BstV1I	GCAGC	3 cut(s)	27, 634, 739
BstX2I	RGATCY	1 cut(s)	174
BstYI	RGATCY	1 cut(s)	174
BstZI	CGGCCG	1 cut(s)	96
BsuI	GTATCC	2 cut(s)	183, 407
BsuRI	GGCC	5 cut(s)	5, 29, 63, 98, 744
BtgI	CCRYGG	2 cut(s)	102, 179
BtsCI	GGATG	2 cut(s)	376, 597
BtsI	GCAGTG	1 cut(s)	61
BtsIMutI	CAGTG	2 cut(s)	61, 525
Cac8I	GCNNGC	2 cut(s)	746, 750
CfoI	GCGC	2 cut(s)	73, 81
Cfr13I	GGNCC	1 cut(s)	742
Cfr42I	CCGCGG	1 cut(s)	105
CseI	GACGC	2 cut(s)	24, 60
Csp6I	GTAC	1 cut(s)	235
CviAII	CATG	3 cut(s)	608, 712, 807
CviQI	GTAC	1 cut(s)	235
DdeI	CTNAG	6 cut(s)	11, 108, 474, 572, 587, 651
DpnI	GATC	4 cut(s)	94, 176, 213, 504
DpnII	GATC	4 cut(s)	92, 174, 211, 502
DriI	GACNNNNNGTC	1 cut(s)	56
EaeI	YGGCCR	3 cut(s)	3, 27, 96
EagI	CGGCCG	1 cut(s)	96
Eam1104I	CTCTTC	2 cut(s)	132, 322
Eam1105I	GACNNNNNGTC	1 cut(s)	56
EarI	CTCTTC	2 cut(s)	132, 322
EciI	GGCGGA	1 cut(s)	284
Ecl136II	GAGCTC	1 cut(s)	304
EclXI	CGGCCG	1 cut(s)	96
Eco24I	GRGCYC	1 cut(s)	306
Eco52I	CGGCCG	1 cut(s)	96
Eco53kI	GAGCTC	1 cut(s)	304
Eco57I	CTGAAG	1 cut(s)	749
Eco88I	CYCGRG	1 cut(s)	404
EcoICRI	GAGCTC	1 cut(s)	304
EcoO109I	RGGNCCY	1 cut(s)	742
EcoRI	GAATTC	1 cut(s)	465
EcoRII	CCWGG	2 cut(s)	297, 734
EcoT22I	ATGCAT	1 cut(s)	609
EcoT38I	GRGCYC	1 cut(s)	306
FaeI	CATG	3 cut(s)	611, 715, 810
FaiI	YATR	9 cut(s)	281, 605, 609, 620, 701, 713, 771, 773, 808
FalI	AAGNNNNNCTT	4 cut(s)	215, 247, 345, 377
FatI	CATG	3 cut(s)	607, 711, 806
FblI	GTMKAC	1 cut(s)	483
FokI	GGATG	2 cut(s)	383, 604
FriOI	GRGCYC	1 cut(s)	306
FspBI	CTAG	3 cut(s)	462, 506, 551
GlaI	GCGC	2 cut(s)	72, 80
HaeIII	GGCC	5 cut(s)	5, 29, 63, 98, 744
HapII	CCGG	3 cut(s)	6, 168, 726
HgaI	GACGC	2 cut(s)	24, 60
HhaI	GCGC	2 cut(s)	73, 81
Hin1II	CATG	3 cut(s)	611, 715, 810
Hin6I	GCGC	2 cut(s)	71, 79
HinP1I	GCGC	2 cut(s)	71, 79
HindIII	AAGCTT	3 cut(s)	254, 359, 562
HinfI	GANTC	5 cut(s)	9, 161, 435, 451, 547
HpaII	CCGG	3 cut(s)	6, 168, 726
HphI	GGTGA	3 cut(s)	358, 437, 550
Hpy166II	GTNNAC	2 cut(s)	160, 484
Hpy188I	TCNGA	2 cut(s)	127, 588
Hpy188III	TCNNGA	5 cut(s)	250, 260, 368, 443, 578
Hpy8I	GTNNAC	2 cut(s)	160, 484
Hpy99I	CGWCG	3 cut(s)	40, 54, 131
HpyAV	CCTTC	3 cut(s)	347, 404, 733
HpyCH4V	TGCA	5 cut(s)	607, 622, 755, 760, 806
HpyF10VI	GCNNNNNNNGC	4 cut(s)	60, 104, 253, 766
HpyF3I	CTNAG	6 cut(s)	11, 108, 474, 572, 587, 651
Hsp92II	CATG	3 cut(s)	611, 715, 810
HspAI	GCGC	2 cut(s)	71, 79
KspI	CCGCGG	1 cut(s)	105
Kzo9I	GATC	4 cut(s)	92, 174, 211, 502
LguI	GCTCTTC	2 cut(s)	132, 322
LmnI	GCTCC	1 cut(s)	301
Lsp1109I	GCAGC	3 cut(s)	27, 634, 739
LweI	GCATC	2 cut(s)	151, 769
MaeI	CTAG	3 cut(s)	462, 506, 551
MaeIII	GTNAC	1 cut(s)	596
MalI	GATC	4 cut(s)	94, 176, 213, 504
MboI	GATC	4 cut(s)	92, 174, 211, 502
MboII	GAAGA	8 cut(s)	146, 149, 235, 309, 553, 556, 755, 780
MflI	RGATCY	1 cut(s)	174
MhlI	GDGCHC	3 cut(s)	287, 306, 724
MluCI	AATT	4 cut(s)	465, 489, 498, 514
MlyI	GAGTC	2 cut(s)	3, 155
MmeI	TCCRAC	2 cut(s)	150, 648
Mph1103I	ATGCAT	1 cut(s)	609
MslI	CAYNNNNRTG	2 cut(s)	278, 774
MspA1I	CMGCKG	2 cut(s)	104, 112
MspI	CCGG	3 cut(s)	6, 168, 726
MspR9I	CCNGG	4 cut(s)	169, 299, 726, 736
Mva1269I	GAATGC	1 cut(s)	346
MvaI	CCWGG	2 cut(s)	299, 736
MvnI	CGCG	4 cut(s)	35, 71, 79, 104
MwoI	GCNNNNNNNGC	4 cut(s)	60, 104, 253, 766
NciI	CCSGG	2 cut(s)	169, 726
NdeII	GATC	4 cut(s)	92, 174, 211, 502
NlaIII	CATG	3 cut(s)	611, 715, 810
NlaIV	GGNNCC	3 cut(s)	176, 286, 721
NmeAIII	GCCGAG	2 cut(s)	107, 265
NsiI	ATGCAT	1 cut(s)	609
PaeR7I	CTCGAG	1 cut(s)	404
PciSI	GCTCTTC	2 cut(s)	132, 322
PctI	GAATGC	1 cut(s)	346
PfeI	GAWTC	3 cut(s)	435, 451, 547
PleI	GAGTC	2 cut(s)	3, 155
PpsI	GAGTC	2 cut(s)	3, 155
Psp124BI	GAGCTC	1 cut(s)	306
Psp6I	CCWGG	2 cut(s)	297, 734
PspGI	CCWGG	2 cut(s)	297, 734
PspN4I	GGNNCC	3 cut(s)	176, 286, 721
PspPI	GGNCC	1 cut(s)	742
PspXI	VCTCGAGB	1 cut(s)	404
PsuI	RGATCY	1 cut(s)	174
PvuII	CAGCTG	1 cut(s)	112
RsaI	GTAC	1 cut(s)	236
RsaNI	GTAC	1 cut(s)	235
RseI	CAYNNNNRTG	2 cut(s)	278, 774
SacI	GAGCTC	1 cut(s)	306
SacII	CCGCGG	1 cut(s)	105
SapI	GCTCTTC	2 cut(s)	132, 322
Sau3AI	GATC	4 cut(s)	92, 174, 211, 502
Sau96I	GGNCC	1 cut(s)	742
SchI	GAGTC	2 cut(s)	3, 155
ScrFI	CCNGG	4 cut(s)	169, 299, 726, 736
SduI	GDGCHC	3 cut(s)	287, 306, 724
SfaNI	GCATC	2 cut(s)	151, 769
SfcI	CTRYAG	2 cut(s)	418, 679
Sfr274I	CTCGAG	1 cut(s)	404
Sfr303I	CCGCGG	1 cut(s)	105
SgrBI	CCGCGG	1 cut(s)	105
SlaI	CTCGAG	1 cut(s)	404
SmiMI	CAYNNNNRTG	2 cut(s)	278, 774
SmlI	CTYRAG	1 cut(s)	404
SmoI	CTYRAG	1 cut(s)	404
Sse9I	AATT	4 cut(s)	465, 489, 498, 514
SspMI	CTAG	3 cut(s)	462, 506, 551
SstI	GAGCTC	1 cut(s)	306
StyD4I	CCNGG	4 cut(s)	167, 297, 724, 734
TaqI	TCGA	6 cut(s)	21, 214, 251, 395, 405, 457
TasI	AATT	4 cut(s)	465, 489, 498, 514
TauI	GCSGC	8 cut(s)	18, 32, 35, 76, 79, 101, 104, 107
TfiI	GAWTC	3 cut(s)	435, 451, 547
TscAI	CASTG	2 cut(s)	61, 532
TseI	GCWGC	3 cut(s)	40, 622, 752
TspDTI	ATGAA	4 cut(s)	366, 387, 427, 728
TspGWI	ACGGA	2 cut(s)	105, 196
TspRI	CASTG	2 cut(s)	61, 532
XapI	RAATTY	2 cut(s)	465, 514
XcmI	CCANNNNNNNNNTGG	1 cut(s)	532
XhoI	CTCGAG	1 cut(s)	404
XmiI	GTMKAC	1 cut(s)	483
XspI	CTAG	3 cut(s)	462, 506, 551
Zsp2I	ATGCAT	1 cut(s)	609

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.