Rh3AG042500

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0007178
Physical Location & Seq
Reverse (-)
2859285 .. 2860601
1317 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG042500.1

Sequence Viewer

Length: 762 bp
ATGAGCCAAGAACAGCCGAGGAGGCCCGTCGAGGATGAGCAGCAGGGGGGTGACCAATACGGCGACTCTTATCTCGAGCTCGCGGCGAAGGTGGTGGCTGATAAGGATGCAGACTCCGCCGTGCAGAGCCCCGTCGGTCTGAAGCTTATTAATGCAGATGACTTCAGCACTAAGAAGACTGAACATCCCGGCCGGCGAGTTGTTCCCGAGTCAGTCGGCGGACAGGGTACGAGTCAAAATTCAAGGCAAGTAGATGAAAAGGAAAGGAAAATCTGTGAATTAGCTAAGGTTGTTGTGCAATACAGCCAGAGAGGTCCTCTGTCAGCACTAATAACCGGTCAACCTATTGGCGGTGCTAGCAGTCAAATCACCATCGGCGAAGCCTTGGAGGCGACCGCCATGACGGCTGGACAGAAGCCGGTGGAGTGGAGTGATGCGGCCGCAATTCAAGCCGCCGAGGTTAGAGCCACTGGCCGAACCAACATTGTACCCGGTGGTGTCGCTGCCGCAGCTCAATCGGCGGCAACTCTCAATGCTAGGGCTACGCGTGACGAGGACAAGACAAAACTTGCTGATATCCTTGCTGATGCAACTTCAAAATTACCGGCAGACAAACCGGCGACACGAAGGGATGCTGAGGGGGTGACGGGTGCAGAAATGCGAAATGATCCATATCTAACCACCCATCCCACCGGTGTGGCAGCTTCGGTGGCGGCCGCTGCTAGGCTCAACCAGAGTAATAGCATTGAAGGAACAAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SMP

Protein Analysis

253

Amino Acids

26.43

Weight (kDa)

5.25

Isoelectric Point (pI)

38.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SMP PF04927 123 - 181 1.2e-22 Seed maturation protein
SMP PF04927 188 - 246 3.9e-21 Seed maturation protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 83, 547
AclWI GGATC 1 cut(s) 662
AcoI YGGCCR 4 cut(s) 190, 438, 472, 714
AcsI RAATTY 1 cut(s) 238
AcuI CTGAAG 2 cut(s) 148, 161
AfaI GTAC 2 cut(s) 229, 489
AfiI CCNNNNNNNGG 2 cut(s) 350, 723
AflIII ACRYGT 1 cut(s) 545
AgeI ACCGGT 2 cut(s) 335, 692
AgsI TTSAA 4 cut(s) 243, 449, 597, 749
AleI CACNNNNGTG 1 cut(s) 695
AluBI AGCT 5 cut(s) 79, 145, 284, 512, 704
AluI AGCT 5 cut(s) 79, 145, 284, 512, 704
Alw21I GWGCWC 1 cut(s) 81
AlwI GGATC 1 cut(s) 662
Ama87I CYCGRG 2 cut(s) 74, 206
AoxI GGCC 5 cut(s) 23, 190, 438, 472, 714
ApeKI GCWGC 5 cut(s) 40, 503, 509, 701, 719
ApoI RAATTY 1 cut(s) 238
AseI ATTAAT 1 cut(s) 150
AsiGI ACCGGT 2 cut(s) 335, 692
AspS9I GGNCC 2 cut(s) 24, 314
AsuC2I CCSGG 2 cut(s) 189, 492
AsuHPI GGTGA 3 cut(s) 62, 361, 655
AsuNHI GCTAGC 1 cut(s) 356
AvaI CYCGRG 2 cut(s) 74, 206
AvaII GGWCC 1 cut(s) 314
BanII GRGCYC 2 cut(s) 81, 131
BbsI GAAGAC 1 cut(s) 182
Bbv12I GWGCWC 1 cut(s) 81
BbvCI CCTCAGC 1 cut(s) 636
BbvI GCAGC 5 cut(s) 52, 490, 521, 706, 713
BccI CCATC 2 cut(s) 380, 693
BceAI ACGGC 3 cut(s) 76, 104, 420
BcgI CGANNNNNNTGC 2 cut(s) 498, 532
BcnI CCSGG 2 cut(s) 189, 492
BfaI CTAG 3 cut(s) 357, 537, 723
BglI GCCNNNNNGGC 3 cut(s) 22, 389, 404
Bme1390I CCNGG 2 cut(s) 189, 492
Bme18I GGWCC 1 cut(s) 314
BmeT110I CYCGRG 2 cut(s) 74, 206
BmgT120I GGNCC 2 cut(s) 24, 314
BmrFI CCNGG 2 cut(s) 189, 492
BmsI GCATC 4 cut(s) 97, 424, 577, 622
BmtI GCTAGC 1 cut(s) 360
BpiI GAAGAC 1 cut(s) 182
BplI GAGNNNNNCTC 2 cut(s) 301, 333
Bpu10I CCTNAGC 2 cut(s) 285, 636
BpuMI CCSGG 2 cut(s) 189, 492
BsaBI GATNNNNATC 1 cut(s) 672
BsaJI CCNNGG 3 cut(s) 17, 384, 456
BsaWI WCCGGW 2 cut(s) 335, 692
Bsc4I CCNNNNNNNGG 2 cut(s) 350, 723
Bse118I RCCGGY 6 cut(s) 192, 335, 418, 604, 616, 692
Bse1I ACTGG 1 cut(s) 475
Bse8I GATNNNNATC 1 cut(s) 672
BseDI CCNNGG 3 cut(s) 17, 384, 456
BseGI GGATG 5 cut(s) 40, 112, 184, 637, 685
BseJI GATNNNNATC 1 cut(s) 672
BseLI CCNNNNNNNGG 2 cut(s) 350, 723
BseMII CTCAG 1 cut(s) 627
BseNI ACTGG 1 cut(s) 475
BseRI GAGGAG 1 cut(s) 34
BseX3I CGGCCG 3 cut(s) 190, 438, 714
BseXI GCAGC 5 cut(s) 52, 490, 521, 706, 713
BsgI GTGCAG 2 cut(s) 143, 672
Bsh1236I CGCG 2 cut(s) 83, 547
Bsh1285I CGRYCG 4 cut(s) 193, 396, 441, 717
BshFI GGCC 5 cut(s) 25, 192, 440, 474, 716
BshTI ACCGGT 2 cut(s) 335, 692
BsiEI CGRYCG 4 cut(s) 193, 396, 441, 717
BsiHKAI GWGCWC 1 cut(s) 81
BsiHKCI CYCGRG 2 cut(s) 74, 206
BsiSI CCGG 8 cut(s) 189, 193, 336, 419, 492, 605, 617, 693
BslI CCNNNNNNNGG 2 cut(s) 350, 723
BsnI GGCC 5 cut(s) 25, 192, 440, 474, 716
BsoBI CYCGRG 2 cut(s) 74, 206
Bsp1286I GDGCHC 2 cut(s) 81, 131
Bsp143I GATC 1 cut(s) 667
BspANI GGCC 5 cut(s) 25, 192, 440, 474, 716
BspCNI CTCAG 1 cut(s) 628
BspFNI CGCG 2 cut(s) 83, 547
BspOI GCTAGC 1 cut(s) 360
BspPI GGATC 1 cut(s) 662
BsrFI RCCGGY 6 cut(s) 192, 335, 418, 604, 616, 692
BsrI ACTGG 1 cut(s) 475
BssAI RCCGGY 6 cut(s) 192, 335, 418, 604, 616, 692
BssECI CCNNGG 3 cut(s) 17, 384, 456
BssMI GATC 1 cut(s) 667
BssT1I CCWWGG 1 cut(s) 384
BstC8I GCNNGC 3 cut(s) 81, 194, 358
BstDEI CTNAG 3 cut(s) 171, 285, 636
BstEII GGTNACC 1 cut(s) 50
BstF5I GGATG 5 cut(s) 40, 112, 184, 637, 685
BstFNI CGCG 2 cut(s) 83, 547
BstKTI GATC 1 cut(s) 670
BstMBI GATC 1 cut(s) 667
BstMCI CGRYCG 4 cut(s) 193, 396, 441, 717
BstPI GGTNACC 1 cut(s) 50
BstSCI CCNGG 2 cut(s) 187, 490
BstUI CGCG 2 cut(s) 83, 547
BstV1I GCAGC 5 cut(s) 52, 490, 521, 706, 713
BstV2I GAAGAC 1 cut(s) 182
BstXI CCANNNNNNTGG 1 cut(s) 697
BstZI CGGCCG 3 cut(s) 190, 438, 714
BsuRI GGCC 5 cut(s) 25, 192, 440, 474, 716
BtsCI GGATG 5 cut(s) 40, 112, 184, 637, 685
BtsIMutI CAGTG 1 cut(s) 468
Cac8I GCNNGC 3 cut(s) 81, 194, 358
CciNI GCGGCCGC 2 cut(s) 438, 714
Cfr10I RCCGGY 6 cut(s) 192, 335, 418, 604, 616, 692
Cfr13I GGNCC 2 cut(s) 24, 314
Csp6I GTAC 2 cut(s) 228, 488
CspAI ACCGGT 2 cut(s) 335, 692
CviAII CATG 1 cut(s) 400
CviQI GTAC 2 cut(s) 228, 488
DdeI CTNAG 3 cut(s) 171, 285, 636
DpnI GATC 1 cut(s) 669
DpnII GATC 1 cut(s) 667
EaeI YGGCCR 4 cut(s) 190, 438, 472, 714
EagI CGGCCG 3 cut(s) 190, 438, 714
EciI GGCGGA 2 cut(s) 106, 234
Ecl136II GAGCTC 1 cut(s) 79
EclXI CGGCCG 3 cut(s) 190, 438, 714
Eco130I CCWWGG 1 cut(s) 384
Eco24I GRGCYC 2 cut(s) 81, 131
Eco32I GATATC 1 cut(s) 577
Eco47I GGWCC 1 cut(s) 314
Eco52I CGGCCG 3 cut(s) 190, 438, 714
Eco53kI GAGCTC 1 cut(s) 79
Eco57I CTGAAG 2 cut(s) 148, 161
Eco88I CYCGRG 2 cut(s) 74, 206
Eco91I GGTNACC 1 cut(s) 50
EcoICRI GAGCTC 1 cut(s) 79
EcoO109I RGGNCCY 1 cut(s) 314
EcoO65I GGTNACC 1 cut(s) 50
EcoRV GATATC 1 cut(s) 577
EcoT14I CCWWGG 1 cut(s) 384
EcoT38I GRGCYC 2 cut(s) 81, 131
ErhI CCWWGG 1 cut(s) 384
FaeI CATG 1 cut(s) 403
FaiI YATR 2 cut(s) 401, 673
FatI CATG 1 cut(s) 399
FokI GGATG 5 cut(s) 47, 119, 171, 644, 672
FriOI GRGCYC 2 cut(s) 81, 131
FspBI CTAG 3 cut(s) 357, 537, 723
HaeIII GGCC 5 cut(s) 25, 192, 440, 474, 716
HapII CCGG 8 cut(s) 189, 193, 336, 419, 492, 605, 617, 693
Hin1II CATG 1 cut(s) 403
HincII GTYRAC 1 cut(s) 341
HindII GTYRAC 1 cut(s) 341
HindIII AAGCTT 1 cut(s) 143
HinfI GANTC 4 cut(s) 65, 113, 209, 232
HpaII CCGG 8 cut(s) 189, 193, 336, 419, 492, 605, 617, 693
HphI GGTGA 3 cut(s) 62, 361, 655
Hpy166II GTNNAC 1 cut(s) 341
Hpy188I TCNGA 1 cut(s) 141
Hpy188III TCNNGA 2 cut(s) 74, 206
Hpy8I GTNNAC 1 cut(s) 341
Hpy99I CGWCG 2 cut(s) 32, 137
HpyAV CCTTC 3 cut(s) 82, 621, 743
HpyCH4V TGCA 6 cut(s) 110, 124, 155, 298, 590, 653
HpyF3I CTNAG 3 cut(s) 171, 285, 636
Hsp92II CATG 1 cut(s) 403
KroI GCCGGC 1 cut(s) 192
KroNI GCCGGC 1 cut(s) 194
Kzo9I GATC 1 cut(s) 667
Lsp1109I GCAGC 5 cut(s) 52, 490, 521, 706, 713
LweI GCATC 4 cut(s) 97, 424, 577, 622
MaeI CTAG 3 cut(s) 357, 537, 723
MaeIII GTNAC 3 cut(s) 50, 548, 643
MalI GATC 1 cut(s) 669
MboI GATC 1 cut(s) 667
MboII GAAGA 1 cut(s) 187
MhlI GDGCHC 2 cut(s) 81, 131
MluCI AATT 4 cut(s) 238, 278, 444, 599
MluI ACGCGT 1 cut(s) 545
MlyI GAGTC 4 cut(s) 59, 107, 218, 241
MnlI CCTC 9 cut(s) 12, 15, 25, 305, 327, 382, 451, 547, 631
MroNI GCCGGC 1 cut(s) 192
MseI TTAA 1 cut(s) 150
MslI CAYNNNNRTG 1 cut(s) 695
MspA1I CMGCKG 1 cut(s) 719
MspI CCGG 8 cut(s) 189, 193, 336, 419, 492, 605, 617, 693
MspR9I CCNGG 2 cut(s) 189, 492
MvnI CGCG 2 cut(s) 83, 547
NaeI GCCGGC 1 cut(s) 194
NciI CCSGG 2 cut(s) 189, 492
NdeII GATC 1 cut(s) 667
NgoMIV GCCGGC 1 cut(s) 192
NheI GCTAGC 1 cut(s) 356
NlaIII CATG 1 cut(s) 403
NmeAIII GCCGAG 2 cut(s) 42, 481
NmuCI GTSAC 3 cut(s) 50, 548, 643
NotI GCGGCCGC 2 cut(s) 438, 714
OliI CACNNNNGTG 1 cut(s) 695
PaeR7I CTCGAG 1 cut(s) 74
PdiI GCCGGC 1 cut(s) 194
PinAI ACCGGT 2 cut(s) 335, 692
PleI GAGTC 4 cut(s) 59, 107, 217, 240
PpsI GAGTC 4 cut(s) 59, 107, 217, 240
PpuMI RGGWCCY 1 cut(s) 314
PshBI ATTAAT 1 cut(s) 150
Psp124BI GAGCTC 1 cut(s) 81
Psp5II RGGWCCY 1 cut(s) 314
PspEI GGTNACC 1 cut(s) 50
PspPI GGNCC 2 cut(s) 24, 314
PspPPI RGGWCCY 1 cut(s) 314
RsaI GTAC 2 cut(s) 229, 489
RsaNI GTAC 2 cut(s) 228, 488
RseI CAYNNNNRTG 1 cut(s) 695
SacI GAGCTC 1 cut(s) 81
SaqAI TTAA 1 cut(s) 150
Sau3AI GATC 1 cut(s) 667
Sau96I GGNCC 2 cut(s) 24, 314
SchI GAGTC 4 cut(s) 59, 107, 218, 241
ScrFI CCNGG 2 cut(s) 189, 492
SduI GDGCHC 2 cut(s) 81, 131
SfaNI GCATC 4 cut(s) 97, 424, 577, 622
Sfr274I CTCGAG 1 cut(s) 74
SgrAI CRCCGGYG 1 cut(s) 692
SinI GGWCC 1 cut(s) 314
SlaI CTCGAG 1 cut(s) 74
SmiMI CAYNNNNRTG 1 cut(s) 695
SmlI CTYRAG 1 cut(s) 74
SmoI CTYRAG 1 cut(s) 74
Sse9I AATT 4 cut(s) 238, 278, 444, 599
SspMI CTAG 3 cut(s) 357, 537, 723
SstI GAGCTC 1 cut(s) 81
StyD4I CCNGG 2 cut(s) 187, 490
StyI CCWWGG 1 cut(s) 384
TaqI TCGA 2 cut(s) 30, 75
TaqII GACCGA 1 cut(s) 125
TasI AATT 4 cut(s) 238, 278, 444, 599
TauI GCSGC 8 cut(s) 86, 440, 443, 455, 509, 524, 716, 719
Tru1I TTAA 1 cut(s) 150
Tru9I TTAA 1 cut(s) 150
TscAI CASTG 1 cut(s) 475
TseFI GTSAC 3 cut(s) 50, 548, 643
TseI GCWGC 5 cut(s) 40, 503, 509, 701, 719
Tsp45I GTSAC 3 cut(s) 50, 548, 643
TspDTI ATGAA 1 cut(s) 270
TspRI CASTG 1 cut(s) 475
VpaK11BI GGWCC 1 cut(s) 314
VspI ATTAAT 1 cut(s) 150
XapI RAATTY 1 cut(s) 238
XhoI CTCGAG 1 cut(s) 74
XspI CTAG 3 cut(s) 357, 537, 723
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.