Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0007178

Physical Location & Seq

Genomic Coordinates Reverse (-)

2074901 .. 2076468

Gene Structure 1568 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g03841.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGAGCCAAGAACAGCCGAGGAGGCCCGTGGAGGATGAGCAGCAAAAGGGAGGAAGCCAATACGGCGACATTTATCTCGAGCTTGCGGCCGAGAAGGCCGCAGACTCCGCCGTGCAGAGCCCCGTCGGTTTGAAGCTTATTAATTCGGATCACTTCAGCAATAAGGAGACTGATCACTTGAGCAATAAGGGGACGACTGAACATTCCGAACGGCGAGTTGTTTTCGAGTTAGGCGGTGGACAGGGTACGAGTCAAAACTCGAGGCATGTAGATGAAAAGGAAAGGAAAATCAGTGAATTAGCTAAGGTTGTTGGGCAATACAGCCATAGAGGTCCTTTGTCTGCACCAACTCAACCTATAGGAGGTACTGGTGGTCAAATCACCATTGGCGAAGCCTTGGAGGCGACCGCCATGACGGCTGGACAGAAGCCGGTGGAGTGGAGTGATGCTGCTGCAATTCAAGCTGCCGAGGTTAGAGCCACTGGCCGGACCAACATTGTACCTGGTGGTGTCGCAGCCGCAGCTCAATCGGCAGCAACTCTCAATGCTAGGGCTACGCGTGACGAGGACAAGACTAAACTCGCTGATATCCTTGCGGATGCAACTTCAAAATTACCGGCGGACAAACCGGCAACACGGCGGGATGCTGAGGGCGTGACTGGTGCAGAAATGCGAAATGATCCATATCTGACCACCCATCCCACCGGTGTGGCAGCTTCCGTGGCGGCAGCTGCTAGGCTCAACCAGGGTAATAGCAACGAAGGAACAAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SMP

Protein Analysis

258

Amino Acids

26.95

Weight (kDa)

5.74

Isoelectric Point (pI)

35.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SMP	PF04927	127 - 185	1.3e-22	Seed maturation protein
SMP	PF04927	192 - 249	5.3e-21	Seed maturation protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007178)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27980
fragaria_vesca	FvH4_6g03840 FvH4_6g03841
malus_domestica	MD04G1217900.v1.1 MD12G1235300.v1.1
prunus_persica	Prupe.6G337900_v2.0.a1 Prupe.6G337900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0452411
rosa_laevigata	RLG00000025605
rosa_multiflora	Rmu_co8111080.1_g000001 Rmu_sc0010928.1_g000016
rosa_roxburghii	Rroxscaffold_6G00429430 Rroxscaffold_6G00429940
rosa_rugosa	Rorug02G0640500 Rorug02G0640600
rosa_samantha	Rh3AG042400 Rh3AG042500 Rh3BG043900 Rh3BG044000 Rh3CG042700 Rh3CG042800 Rh3DG043400 Rh3DG043500
rosa_wichuraiana	Rw3G003250 Rw3G003260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	559
AclWI	GGATC	2 cut(s)	156, 674
AcoI	YGGCCR	2 cut(s)	87, 484
AcuI	CTGAAG	1 cut(s)	139
AfaI	GTAC	3 cut(s)	247, 367, 501
AfiI	CCNNNNNNNGG	2 cut(s)	362, 486
AflIII	ACRYGT	1 cut(s)	557
AgeI	ACCGGT	1 cut(s)	704
AgsI	TTSAA	3 cut(s)	133, 461, 609
AjnI	CCWGG	2 cut(s)	502, 744
AleI	CACNNNNGTG	1 cut(s)	707
AluBI	AGCT	7 cut(s)	82, 136, 302, 464, 524, 716, 731
AluI	AGCT	7 cut(s)	82, 136, 302, 464, 524, 716, 731
Alw26I	GTCTC	1 cut(s)	161
AlwI	GGATC	2 cut(s)	156, 674
Ama87I	CYCGRG	2 cut(s)	77, 259
AoxI	GGCC	4 cut(s)	23, 87, 96, 484
AseI	ATTAAT	1 cut(s)	141
AsiGI	ACCGGT	1 cut(s)	704
AspS9I	GGNCC	3 cut(s)	24, 332, 489
AsuHPI	GGTGA	1 cut(s)	373
AvaI	CYCGRG	2 cut(s)	77, 259
AvaII	GGWCC	2 cut(s)	332, 489
BanII	GRGCYC	1 cut(s)	122
BbvCI	CCTCAGC	1 cut(s)	648
BccI	CCATC	1 cut(s)	705
BceAI	ACGGC	5 cut(s)	79, 95, 227, 432, 653
BcgI	CGANNNNNNTGC	2 cut(s)	510, 544
BciT130I	CCWGG	2 cut(s)	504, 746
BclI	TGATCA	1 cut(s)	172
BcoDI	GTCTC	1 cut(s)	161
BfaI	CTAG	2 cut(s)	549, 735
BfmI	CTRYAG	1 cut(s)	357
BglI	GCCNNNNNGGC	5 cut(s)	22, 63, 95, 401, 416
Bme1390I	CCNGG	2 cut(s)	504, 746
Bme18I	GGWCC	2 cut(s)	332, 489
BmeT110I	CYCGRG	2 cut(s)	77, 259
BmgT120I	GGNCC	3 cut(s)	24, 332, 489
BmrFI	CCNGG	2 cut(s)	504, 746
BmsI	GCATC	3 cut(s)	436, 589, 634
Bpu10I	CCTNAGC	2 cut(s)	303, 648
BpuEI	CTTGAG	1 cut(s)	199
BsaBI	GATNNNNATC	1 cut(s)	684
BsaJI	CCNNGG	6 cut(s)	17, 27, 396, 468, 720, 745
BsaWI	WCCGGW	1 cut(s)	704
Bsc4I	CCNNNNNNNGG	2 cut(s)	362, 486
Bse118I	RCCGGY	4 cut(s)	430, 616, 628, 704
Bse1I	ACTGG	3 cut(s)	373, 487, 664
Bse8I	GATNNNNATC	1 cut(s)	684
BseBI	CCWGG	2 cut(s)	504, 746
BseDI	CCNNGG	6 cut(s)	17, 27, 396, 468, 720, 745
BseGI	GGATG	4 cut(s)	40, 604, 649, 697
BseJI	GATNNNNATC	1 cut(s)	684
BseLI	CCNNNNNNNGG	2 cut(s)	362, 486
BseMII	CTCAG	1 cut(s)	639
BseNI	ACTGG	3 cut(s)	373, 487, 664
BseRI	GAGGAG	1 cut(s)	34
BseX3I	CGGCCG	1 cut(s)	87
BsgI	GTGCAG	3 cut(s)	134, 327, 684
Bsh1236I	CGCG	1 cut(s)	559
Bsh1285I	CGRYCG	2 cut(s)	90, 408
BshFI	GGCC	4 cut(s)	25, 89, 98, 486
BshTI	ACCGGT	1 cut(s)	704
BsiEI	CGRYCG	2 cut(s)	90, 408
BsiHKCI	CYCGRG	2 cut(s)	77, 259
BsiSI	CCGG	5 cut(s)	431, 487, 617, 629, 705
BslFI	GGGAC	1 cut(s)	205
BslI	CCNNNNNNNGG	2 cut(s)	362, 486
BsmAI	GTCTC	1 cut(s)	161
BsmFI	GGGAC	1 cut(s)	205
BsnI	GGCC	4 cut(s)	25, 89, 98, 486
BsoBI	CYCGRG	2 cut(s)	77, 259
Bsp1286I	GDGCHC	1 cut(s)	122
Bsp143I	GATC	3 cut(s)	148, 172, 679
BspANI	GGCC	4 cut(s)	25, 89, 98, 486
BspCNI	CTCAG	1 cut(s)	640
BspFNI	CGCG	1 cut(s)	559
BspPI	GGATC	2 cut(s)	156, 674
BsrFI	RCCGGY	4 cut(s)	430, 616, 628, 704
BsrI	ACTGG	3 cut(s)	373, 487, 664
BssAI	RCCGGY	4 cut(s)	430, 616, 628, 704
BssECI	CCNNGG	6 cut(s)	17, 27, 396, 468, 720, 745
BssMI	GATC	3 cut(s)	148, 172, 679
BssT1I	CCWWGG	1 cut(s)	396
Bst2UI	CCWGG	2 cut(s)	504, 746
BstC8I	GCNNGC	1 cut(s)	84
BstDEI	CTNAG	2 cut(s)	303, 648
BstDSI	CCRYGG	2 cut(s)	27, 720
BstENI	CCTNNNNNAGG	1 cut(s)	360
BstF5I	GGATG	4 cut(s)	40, 604, 649, 697
BstFNI	CGCG	1 cut(s)	559
BstKTI	GATC	3 cut(s)	151, 175, 682
BstMAI	GTCTC	1 cut(s)	161
BstMBI	GATC	3 cut(s)	148, 172, 679
BstMCI	CGRYCG	2 cut(s)	90, 408
BstNI	CCWGG	2 cut(s)	504, 746
BstNSI	RCATGY	1 cut(s)	269
BstSCI	CCNGG	2 cut(s)	502, 744
BstSFI	CTRYAG	1 cut(s)	357
BstUI	CGCG	1 cut(s)	559
BstXI	CCANNNNNNTGG	1 cut(s)	709
BstZI	CGGCCG	1 cut(s)	87
BsuRI	GGCC	4 cut(s)	25, 89, 98, 486
BtgI	CCRYGG	2 cut(s)	27, 720
BtsCI	GGATG	4 cut(s)	40, 604, 649, 697
BtsIMutI	CAGTG	2 cut(s)	298, 480
Cac8I	GCNNGC	1 cut(s)	84
Cfr10I	RCCGGY	4 cut(s)	430, 616, 628, 704
Cfr13I	GGNCC	3 cut(s)	24, 332, 489
CsiI	ACCWGGT	1 cut(s)	502
Csp6I	GTAC	3 cut(s)	246, 366, 500
CspAI	ACCGGT	1 cut(s)	704
CviAII	CATG	2 cut(s)	266, 412
CviQI	GTAC	3 cut(s)	246, 366, 500
DdeI	CTNAG	2 cut(s)	303, 648
DpnI	GATC	3 cut(s)	150, 174, 681
DpnII	GATC	3 cut(s)	148, 172, 679
EaeI	YGGCCR	2 cut(s)	87, 484
EagI	CGGCCG	1 cut(s)	87
EciI	GGCGGA	2 cut(s)	97, 635
EclXI	CGGCCG	1 cut(s)	87
Eco130I	CCWWGG	1 cut(s)	396
Eco24I	GRGCYC	1 cut(s)	122
Eco32I	GATATC	1 cut(s)	589
Eco47I	GGWCC	2 cut(s)	332, 489
Eco52I	CGGCCG	1 cut(s)	87
Eco57I	CTGAAG	1 cut(s)	139
Eco88I	CYCGRG	2 cut(s)	77, 259
EcoNI	CCTNNNNNAGG	1 cut(s)	360
EcoO109I	RGGNCCY	1 cut(s)	332
EcoRII	CCWGG	2 cut(s)	502, 744
EcoRV	GATATC	1 cut(s)	589
EcoT14I	CCWWGG	1 cut(s)	396
EcoT38I	GRGCYC	1 cut(s)	122
ErhI	CCWWGG	1 cut(s)	396
FaeI	CATG	2 cut(s)	269, 415
FaiI	YATR	5 cut(s)	267, 327, 359, 413, 685
FaqI	GGGAC	1 cut(s)	205
FatI	CATG	2 cut(s)	265, 411
FauI	CCCGC	1 cut(s)	633
FbaI	TGATCA	1 cut(s)	172
FokI	GGATG	4 cut(s)	47, 611, 656, 684
FriOI	GRGCYC	1 cut(s)	122
FspBI	CTAG	2 cut(s)	549, 735
HaeIII	GGCC	4 cut(s)	25, 89, 98, 486
HapII	CCGG	5 cut(s)	431, 487, 617, 629, 705
Hin1II	CATG	2 cut(s)	269, 415
HindIII	AAGCTT	1 cut(s)	134
HinfI	GANTC	2 cut(s)	104, 250
HpaII	CCGG	5 cut(s)	431, 487, 617, 629, 705
HphI	GGTGA	1 cut(s)	373
Hpy166II	GTNNAC	1 cut(s)	239
Hpy188I	TCNGA	3 cut(s)	148, 208, 690
Hpy188III	TCNNGA	1 cut(s)	77
Hpy8I	GTNNAC	1 cut(s)	239
Hpy99I	CGWCG	1 cut(s)	128
HpyAV	CCTTC	2 cut(s)	88, 755
HpyCH4V	TGCA	5 cut(s)	115, 344, 455, 602, 665
HpyF3I	CTNAG	2 cut(s)	303, 648
Hsp92II	CATG	2 cut(s)	269, 415
Ksp22I	TGATCA	1 cut(s)	172
Kzo9I	GATC	3 cut(s)	148, 172, 679
LweI	GCATC	3 cut(s)	436, 589, 634
MabI	ACCWGGT	1 cut(s)	502
MaeI	CTAG	2 cut(s)	549, 735
MaeIII	GTNAC	2 cut(s)	560, 655
MalI	GATC	3 cut(s)	150, 174, 681
MboI	GATC	3 cut(s)	148, 172, 679
MhlI	GDGCHC	1 cut(s)	122
MluCI	AATT	4 cut(s)	142, 296, 456, 611
MluI	ACGCGT	1 cut(s)	557
MlyI	GAGTC	2 cut(s)	98, 259
MseI	TTAA	1 cut(s)	141
MslI	CAYNNNNRTG	2 cut(s)	270, 707
MspA1I	CMGCKG	1 cut(s)	731
MspI	CCGG	5 cut(s)	431, 487, 617, 629, 705
MspR9I	CCNGG	2 cut(s)	504, 746
MvaI	CCWGG	2 cut(s)	504, 746
MvnI	CGCG	1 cut(s)	559
NdeII	GATC	3 cut(s)	148, 172, 679
NlaIII	CATG	2 cut(s)	269, 415
NmeAIII	GCCGAG	3 cut(s)	42, 115, 493
NmuCI	GTSAC	2 cut(s)	560, 655
NspI	RCATGY	1 cut(s)	269
OliI	CACNNNNGTG	1 cut(s)	707
PaeR7I	CTCGAG	2 cut(s)	77, 259
PinAI	ACCGGT	1 cut(s)	704
PleI	GAGTC	2 cut(s)	98, 258
PpsI	GAGTC	2 cut(s)	98, 258
PpuMI	RGGWCCY	1 cut(s)	332
PshBI	ATTAAT	1 cut(s)	141
Psp5II	RGGWCCY	1 cut(s)	332
Psp6I	CCWGG	2 cut(s)	502, 744
PspGI	CCWGG	2 cut(s)	502, 744
PspPI	GGNCC	3 cut(s)	24, 332, 489
PspPPI	RGGWCCY	1 cut(s)	332
PspXI	VCTCGAGB	1 cut(s)	259
PvuII	CAGCTG	1 cut(s)	731
RsaI	GTAC	3 cut(s)	247, 367, 501
RsaNI	GTAC	3 cut(s)	246, 366, 500
RseI	CAYNNNNRTG	2 cut(s)	270, 707
SaqAI	TTAA	1 cut(s)	141
Sau3AI	GATC	3 cut(s)	148, 172, 679
Sau96I	GGNCC	3 cut(s)	24, 332, 489
SchI	GAGTC	2 cut(s)	98, 259
ScrFI	CCNGG	2 cut(s)	504, 746
SduI	GDGCHC	1 cut(s)	122
SexAI	ACCWGGT	1 cut(s)	502
SfaNI	GCATC	3 cut(s)	436, 589, 634
SfcI	CTRYAG	1 cut(s)	357
SfiI	GGCCNNNNNGGCC	1 cut(s)	95
Sfr274I	CTCGAG	2 cut(s)	77, 259
SgrAI	CRCCGGYG	1 cut(s)	704
SinI	GGWCC	2 cut(s)	332, 489
SlaI	CTCGAG	2 cut(s)	77, 259
SmiMI	CAYNNNNRTG	2 cut(s)	270, 707
SmlI	CTYRAG	3 cut(s)	77, 178, 259
SmoI	CTYRAG	3 cut(s)	77, 178, 259
Sse9I	AATT	4 cut(s)	142, 296, 456, 611
SspMI	CTAG	2 cut(s)	549, 735
StyD4I	CCNGG	2 cut(s)	502, 744
StyI	CCWWGG	1 cut(s)	396
TaqI	TCGA	3 cut(s)	78, 225, 260
TasI	AATT	4 cut(s)	142, 296, 456, 611
TauI	GCSGC	4 cut(s)	89, 101, 521, 728
Tru1I	TTAA	1 cut(s)	141
Tru9I	TTAA	1 cut(s)	141
TscAI	CASTG	2 cut(s)	298, 487
TseFI	GTSAC	2 cut(s)	560, 655
Tsp45I	GTSAC	2 cut(s)	560, 655
TspDTI	ATGAA	1 cut(s)	288
TspGWI	ACGGA	1 cut(s)	709
TspRI	CASTG	2 cut(s)	298, 487
VpaK11BI	GGWCC	2 cut(s)	332, 489
VspI	ATTAAT	1 cut(s)	141
XagI	CCTNNNNNAGG	1 cut(s)	360
XceI	RCATGY	1 cut(s)	269
XhoI	CTCGAG	2 cut(s)	77, 259
XspI	CTAG	2 cut(s)	549, 735

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.