Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0007178

Physical Location & Seq

Genomic Coordinates Forward (+)

30041835 .. 30043476

Gene Structure 1642 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1217900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGAGCCAAGAACAGTCTCGGAGGCCTCAAGATCAGAAGGAGGCAGTGAAATATGGGGACGTGTTTCCCGGCGTTCAAGGAGCCGAGCTGGCGGAGAAGGTGGTGACGCCCAAGGACGCTGCCATTATGCAGGCGGCGGAAAATGCTGTGCTGGGGCATACCCTCAAGGGTGGTGCTGCCTCATTCATGCAGTCTGCCGCCACGGAGAATGAGAAGGCGGGTGTTGTGGGTTCAAGTGACGTGAATGCGGATGTTGTGGGAGACGGGGTTAGCGTTAAGGAGGCTGATCTTCCGGGACGCCGTATAATATCAGAGTCGATCGGTGGACAGGCTGTGGGGCAATACAGCCAGCGAGCTCCTTTGGCAGCACCAAACACTATTCAACCAGTCGGTGGCTCTGCCGGTCAAATCACCATTGGTGAGGCCCTCGAGGCCACGGCTATGACAGCCGGACAGAAGCCGGTGGAGTATAGCGATGCAGCCGCAATTCAGGCGGCAGAGGTTAGAGCAACCGGCCGTACCAACATAGTACCCGGTGGTGTGGCAGCAGCCGCTCAGTCGGCCGCAACCCTCAATGCTCGGGCTACAAAGGACGAGGAGAAGACTAAACTGGCCGACATTCTTGCGGATGCATCTTCAAAGTTACCGGCAGACAAACCGGCGACACGTCGAGATGCTGAGGGAGTGACGGGAGCGGAAATGCGAAACGATCCATTCCTGACTACGCACCCGACTGGAGTGGCGGCTTCGGTGGCGGCAGCTGCTAGGCTGAACGAGAATAACAGCAACGAAAGGCTAAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SMP

Protein Analysis

268

Amino Acids

27.24

Weight (kDa)

5.14

Isoelectric Point (pI)

35.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SMP	PF04927	16 - 72	1.5e-16	Seed maturation protein
SMP	PF04927	137 - 195	2.6e-22	Seed maturation protein
SMP	PF04927	202 - 260	2.2e-20	Seed maturation protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007178)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27980
fragaria_vesca	FvH4_6g03840 FvH4_6g03841
malus_domestica	MD04G1217900.v1.1 MD12G1235300.v1.1
prunus_persica	Prupe.6G337900_v2.0.a1 Prupe.6G337900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0452411
rosa_laevigata	RLG00000025605
rosa_multiflora	Rmu_co8111080.1_g000001 Rmu_sc0010928.1_g000016
rosa_roxburghii	Rroxscaffold_6G00429430 Rroxscaffold_6G00429940
rosa_rugosa	Rorug02G0640500 Rorug02G0640600
rosa_samantha	Rh3AG042400 Rh3AG042500 Rh3BG043900 Rh3BG044000 Rh3CG042700 Rh3CG042800 Rh3DG043400 Rh3DG043500
rosa_wichuraiana	Rw3G003250 Rw3G003260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	428
AccB7I	CCANNNNNTGG	1 cut(s)	392
AccBSI	CCGCTC	2 cut(s)	554, 695
AclWI	GGATC	1 cut(s)	704
AcoI	YGGCCR	3 cut(s)	514, 561, 612
AcyI	GRCGYC	2 cut(s)	107, 298
AfaI	GTAC	2 cut(s)	520, 531
AfiI	CCNNNNNNNGG	1 cut(s)	392
AflIII	ACRYGT	2 cut(s)	60, 665
AgsI	TTSAA	4 cut(s)	77, 234, 383, 639
AjiI	CACGTC	3 cut(s)	61, 241, 668
AluBI	AGCT	3 cut(s)	88, 356, 761
AluI	AGCT	3 cut(s)	88, 356, 761
Alw21I	GWGCWC	1 cut(s)	358
Alw26I	GTCTC	2 cut(s)	21, 255
AlwI	GGATC	1 cut(s)	704
Ama87I	CYCGRG	2 cut(s)	428, 579
AoxI	GGCC	6 cut(s)	23, 423, 432, 514, 561, 612
ApeKI	GCWGC	8 cut(s)	119, 176, 365, 479, 545, 548, 758, 761
AspS9I	GGNCC	1 cut(s)	424
AsuC2I	CCSGG	3 cut(s)	69, 294, 534
AsuHPI	GGTGA	3 cut(s)	115, 403, 431
AvaI	CYCGRG	2 cut(s)	428, 579
BanII	GRGCYC	1 cut(s)	358
BbsI	GAAGAC	1 cut(s)	608
Bbv12I	GWGCWC	1 cut(s)	358
BbvCI	CCTCAGC	1 cut(s)	678
BbvI	GCAGC	8 cut(s)	106, 163, 377, 491, 557, 560, 748, 770
BceAI	ACGGC	3 cut(s)	285, 453, 501
BcgI	CGANNNNNNTGC	2 cut(s)	605, 639
BcnI	CCSGG	3 cut(s)	69, 294, 534
BcoDI	GTCTC	2 cut(s)	21, 255
BfaI	CTAG	1 cut(s)	765
BglI	GCCNNNNNGGC	2 cut(s)	89, 431
Bme1390I	CCNGG	3 cut(s)	69, 294, 534
BmeT110I	CYCGRG	2 cut(s)	428, 579
BmgBI	CACGTC	3 cut(s)	61, 241, 668
BmgT120I	GGNCC	1 cut(s)	424
BmiI	GGNNCC	1 cut(s)	82
BmrFI	CCNGG	3 cut(s)	69, 294, 534
BmsI	GCATC	4 cut(s)	466, 619, 641, 664
BpiI	GAAGAC	1 cut(s)	608
BpmI	CTGGAG	1 cut(s)	756
Bpu10I	CCTNAGC	1 cut(s)	678
BpuEI	CTTGAG	2 cut(s)	12, 149
BpuMI	CCSGG	3 cut(s)	69, 294, 534
BsaHI	GRCGYC	2 cut(s)	107, 298
BsaJI	CCNNGG	3 cut(s)	111, 201, 435
BsaXI	ACNNNNNCTCC	2 cut(s)	252, 282
Bsc4I	CCNNNNNNNGG	1 cut(s)	392
Bse118I	RCCGGY	5 cut(s)	401, 460, 512, 646, 658
Bse1I	ACTGG	3 cut(s)	386, 615, 739
BseDI	CCNNGG	3 cut(s)	111, 201, 435
BseGI	GGATG	2 cut(s)	256, 634
BseLI	CCNNNNNNNGG	1 cut(s)	392
BseMII	CTCAG	2 cut(s)	569, 669
BseNI	ACTGG	3 cut(s)	386, 615, 739
BseRI	GAGGAG	1 cut(s)	611
BseX3I	CGGCCG	2 cut(s)	514, 561
BseXI	GCAGC	8 cut(s)	106, 163, 377, 491, 557, 560, 748, 770
BseYI	CCCAGC	1 cut(s)	151
Bsh1285I	CGRYCG	3 cut(s)	321, 517, 564
BshFI	GGCC	6 cut(s)	25, 425, 434, 516, 563, 614
BsiEI	CGRYCG	3 cut(s)	321, 517, 564
BsiHKAI	GWGCWC	1 cut(s)	358
BsiHKCI	CYCGRG	2 cut(s)	428, 579
BsiSI	CCGG	9 cut(s)	69, 293, 402, 450, 461, 513, 534, 647, 659
BslFI	GGGAC	2 cut(s)	71, 309
BslI	CCNNNNNNNGG	1 cut(s)	392
BsmAI	GTCTC	2 cut(s)	21, 255
BsmBI	CGTCTC	1 cut(s)	255
BsmFI	GGGAC	2 cut(s)	71, 309
BsmI	GAATGC	1 cut(s)	250
BsnI	GGCC	6 cut(s)	25, 425, 434, 516, 563, 614
BsoBI	CYCGRG	2 cut(s)	428, 579
Bsp1286I	GDGCHC	1 cut(s)	358
Bsp143I	GATC	4 cut(s)	31, 286, 318, 709
BspANI	GGCC	6 cut(s)	25, 425, 434, 516, 563, 614
BspCNI	CTCAG	2 cut(s)	568, 670
BspLI	GGNNCC	1 cut(s)	82
BspPI	GGATC	1 cut(s)	704
BsrBI	CCGCTC	2 cut(s)	554, 695
BsrFI	RCCGGY	5 cut(s)	401, 460, 512, 646, 658
BsrI	ACTGG	3 cut(s)	386, 615, 739
BssAI	RCCGGY	5 cut(s)	401, 460, 512, 646, 658
BssECI	CCNNGG	3 cut(s)	111, 201, 435
BssMI	GATC	4 cut(s)	31, 286, 318, 709
BssNI	GRCGYC	2 cut(s)	107, 298
BssT1I	CCWWGG	1 cut(s)	111
Bst4CI	ACNGT	1 cut(s)	15
BstACI	GRCGYC	2 cut(s)	107, 298
BstC8I	GCNNGC	4 cut(s)	90, 132, 350, 354
BstDEI	CTNAG	2 cut(s)	555, 678
BstDSI	CCRYGG	2 cut(s)	201, 435
BstF5I	GGATG	2 cut(s)	256, 634
BstKTI	GATC	4 cut(s)	34, 289, 321, 712
BstMAI	GTCTC	2 cut(s)	21, 255
BstMBI	GATC	4 cut(s)	31, 286, 318, 709
BstMCI	CGRYCG	3 cut(s)	321, 517, 564
BstSCI	CCNGG	3 cut(s)	67, 292, 532
BstV1I	GCAGC	8 cut(s)	106, 163, 377, 491, 557, 560, 748, 770
BstV2I	GAAGAC	1 cut(s)	608
BstZI	CGGCCG	2 cut(s)	514, 561
BsuRI	GGCC	6 cut(s)	25, 425, 434, 516, 563, 614
BtgI	CCRYGG	2 cut(s)	201, 435
BtgZI	GCGATG	1 cut(s)	489
BtrI	CACGTC	3 cut(s)	61, 241, 668
BtsCI	GGATG	2 cut(s)	256, 634
BtsI	GCAGTG	1 cut(s)	51
BtsIMutI	CAGTG	1 cut(s)	51
Cac8I	GCNNGC	4 cut(s)	90, 132, 350, 354
Cfr10I	RCCGGY	5 cut(s)	401, 460, 512, 646, 658
Cfr13I	GGNCC	1 cut(s)	424
CseI	GACGC	3 cut(s)	115, 125, 306
Csp6I	GTAC	2 cut(s)	519, 530
CviAII	CATG	1 cut(s)	187
CviQI	GTAC	2 cut(s)	519, 530
DdeI	CTNAG	2 cut(s)	555, 678
DpnI	GATC	4 cut(s)	33, 288, 320, 711
DpnII	GATC	4 cut(s)	31, 286, 318, 709
EaeI	YGGCCR	3 cut(s)	514, 561, 612
EagI	CGGCCG	2 cut(s)	514, 561
EciI	GGCGGA	2 cut(s)	107, 152
Ecl136II	GAGCTC	1 cut(s)	356
EclXI	CGGCCG	2 cut(s)	514, 561
Eco130I	CCWWGG	1 cut(s)	111
Eco147I	AGGCCT	1 cut(s)	25
Eco24I	GRGCYC	1 cut(s)	358
Eco52I	CGGCCG	2 cut(s)	514, 561
Eco53kI	GAGCTC	1 cut(s)	356
Eco88I	CYCGRG	2 cut(s)	428, 579
EcoICRI	GAGCTC	1 cut(s)	356
EcoO109I	RGGNCCY	1 cut(s)	424
EcoT14I	CCWWGG	1 cut(s)	111
EcoT22I	ATGCAT	1 cut(s)	634
EcoT38I	GRGCYC	1 cut(s)	358
ErhI	CCWWGG	1 cut(s)	111
Esp3I	CGTCTC	1 cut(s)	255
FaeI	CATG	1 cut(s)	190
FaiI	YATR	8 cut(s)	54, 128, 159, 188, 305, 443, 471, 527
FaqI	GGGAC	2 cut(s)	71, 309
FatI	CATG	1 cut(s)	186
FauI	CCCGC	1 cut(s)	211
FokI	GGATG	2 cut(s)	263, 641
FriOI	GRGCYC	1 cut(s)	358
FspBI	CTAG	1 cut(s)	765
GsaI	CCCAGC	1 cut(s)	155
GsuI	CTGGAG	1 cut(s)	756
HaeIII	GGCC	6 cut(s)	25, 425, 434, 516, 563, 614
HapII	CCGG	9 cut(s)	69, 293, 402, 450, 461, 513, 534, 647, 659
HgaI	GACGC	3 cut(s)	115, 125, 306
Hin1I	GRCGYC	2 cut(s)	107, 298
Hin1II	CATG	1 cut(s)	190
HinfI	GANTC	1 cut(s)	314
HpaII	CCGG	9 cut(s)	69, 293, 402, 450, 461, 513, 534, 647, 659
HphI	GGTGA	3 cut(s)	115, 403, 431
Hpy166II	GTNNAC	1 cut(s)	326
Hpy188I	TCNGA	3 cut(s)	21, 36, 313
Hpy188III	TCNNGA	3 cut(s)	29, 671, 718
Hpy8I	GTNNAC	1 cut(s)	326
Hpy99I	CGWCG	1 cut(s)	672
HpyAV	CCTTC	3 cut(s)	31, 91, 208
HpyCH4III	ACNGT	1 cut(s)	15
HpyCH4IV	ACGT	3 cut(s)	60, 240, 667
HpyCH4V	TGCA	4 cut(s)	130, 190, 479, 632
HpyF3I	CTNAG	2 cut(s)	555, 678
HpySE526I	ACGT	3 cut(s)	60, 240, 667
Hsp92I	GRCGYC	2 cut(s)	107, 298
Hsp92II	CATG	1 cut(s)	190
Kzo9I	GATC	4 cut(s)	31, 286, 318, 709
LmnI	GCTCC	3 cut(s)	80, 361, 692
Lsp1109I	GCAGC	8 cut(s)	106, 163, 377, 491, 557, 560, 748, 770
LweI	GCATC	4 cut(s)	466, 619, 641, 664
MaeI	CTAG	1 cut(s)	765
MaeII	ACGT	3 cut(s)	60, 240, 667
MaeIII	GTNAC	4 cut(s)	103, 236, 642, 685
MalI	GATC	4 cut(s)	33, 288, 320, 711
MbiI	CCGCTC	2 cut(s)	554, 695
MboI	GATC	4 cut(s)	31, 286, 318, 709
MboII	GAAGA	3 cut(s)	281, 613, 627
MhlI	GDGCHC	1 cut(s)	358
MluCI	AATT	1 cut(s)	486
MlyI	GAGTC	1 cut(s)	323
Mph1103I	ATGCAT	1 cut(s)	634
MseI	TTAA	1 cut(s)	276
MslI	CAYNNNNRTG	1 cut(s)	440
MspA1I	CMGCKG	1 cut(s)	761
MspI	CCGG	9 cut(s)	69, 293, 402, 450, 461, 513, 534, 647, 659
MspR9I	CCNGG	3 cut(s)	69, 294, 534
Mva1269I	GAATGC	1 cut(s)	250
NciI	CCSGG	3 cut(s)	69, 294, 534
NdeII	GATC	4 cut(s)	31, 286, 318, 709
NlaIII	CATG	1 cut(s)	190
NlaIV	GGNNCC	1 cut(s)	82
NmeAIII	GCCGAG	1 cut(s)	109
NmuCI	GTSAC	3 cut(s)	103, 236, 685
NsiI	ATGCAT	1 cut(s)	634
PaeR7I	CTCGAG	1 cut(s)	428
PceI	AGGCCT	1 cut(s)	25
PcsI	WCGNNNNNNNCGW	1 cut(s)	270
PctI	GAATGC	1 cut(s)	250
PflMI	CCANNNNNTGG	1 cut(s)	392
PfoI	TCCNGGA	1 cut(s)	292
Ple19I	CGATCG	1 cut(s)	321
PleI	GAGTC	1 cut(s)	322
PpsI	GAGTC	1 cut(s)	322
Psp124BI	GAGCTC	1 cut(s)	358
PspFI	CCCAGC	1 cut(s)	151
PspN4I	GGNNCC	1 cut(s)	82
PspPI	GGNCC	1 cut(s)	424
PspXI	VCTCGAGB	1 cut(s)	428
PvuI	CGATCG	1 cut(s)	321
PvuII	CAGCTG	1 cut(s)	761
RsaI	GTAC	2 cut(s)	520, 531
RsaNI	GTAC	2 cut(s)	519, 530
RseI	CAYNNNNRTG	1 cut(s)	440
SacI	GAGCTC	1 cut(s)	358
SaqAI	TTAA	1 cut(s)	276
Sau3AI	GATC	4 cut(s)	31, 286, 318, 709
Sau96I	GGNCC	1 cut(s)	424
SchI	GAGTC	1 cut(s)	323
ScrFI	CCNGG	3 cut(s)	69, 294, 534
SduI	GDGCHC	1 cut(s)	358
SetI	ASST	8 cut(s)	63, 90, 102, 243, 358, 504, 670, 763
SfaNI	GCATC	4 cut(s)	466, 619, 641, 664
SfiI	GGCCNNNNNGGCC	1 cut(s)	431
Sfr274I	CTCGAG	1 cut(s)	428
SlaI	CTCGAG	1 cut(s)	428
SmiMI	CAYNNNNRTG	1 cut(s)	440
SmlI	CTYRAG	3 cut(s)	27, 164, 428
SmoI	CTYRAG	3 cut(s)	27, 164, 428
Sse9I	AATT	1 cut(s)	486
SseBI	AGGCCT	1 cut(s)	25
SspMI	CTAG	1 cut(s)	765
SstI	GAGCTC	1 cut(s)	358
StuI	AGGCCT	1 cut(s)	25
StyD4I	CCNGG	3 cut(s)	67, 292, 532
StyI	CCWWGG	1 cut(s)	111
TaaI	ACNGT	1 cut(s)	15
TaiI	ACGT	3 cut(s)	63, 243, 670
TaqI	TCGA	3 cut(s)	317, 429, 670
TasI	AATT	1 cut(s)	486
TauI	GCSGC	8 cut(s)	137, 200, 485, 497, 554, 566, 746, 758
Tru1I	TTAA	1 cut(s)	276
Tru9I	TTAA	1 cut(s)	276
TscAI	CASTG	1 cut(s)	51
TseFI	GTSAC	3 cut(s)	103, 236, 685
TseI	GCWGC	8 cut(s)	119, 176, 365, 479, 545, 548, 758, 761
Tsp45I	GTSAC	3 cut(s)	103, 236, 685
TspDTI	ATGAA	1 cut(s)	175
TspGWI	ACGGA	1 cut(s)	218
TspRI	CASTG	1 cut(s)	51
Van91I	CCANNNNNTGG	1 cut(s)	392
XhoI	CTCGAG	1 cut(s)	428
XspI	CTAG	1 cut(s)	765
Zsp2I	ATGCAT	1 cut(s)	634

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.