Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0003952

Physical Location & Seq

Genomic Coordinates Reverse (-)

2266722 .. 2272323

Gene Structure 5602 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g04180.t5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1164 bp

ATGAATTCAATTGTGGAGATTCATCCCAAAGAATTGAAGTTTGTAGTTGAGTTGATGAAGCAAAGCTCATGCTCCATTCGACTTACCAACACGTCCGACCGCCATGTTGCTTTTAAGGTTAAAACTACTTCCCCCAAGAAATACTGTGTACGACCAAATGTAGGTGTTATCTTGCCAAAATCATCTTGTGAATTCTCAGTTACAATGCAAGCTCTCAAGACAGCTTTGCCTGATATGGATTGCAAAGATAAGTTTTTAATCCAAAGCACAGCTGTTTCTTCTGAGACAACTGACGCGGATATTACAGCTAGCATGTTTGCGAAAGGTGAGGGTAAATACGTTGAAGAGAAAAAGCTAAGAGTATTCTATATCAGCCCACCTGATTCGCCAATGCTGTCACCAATCAAGGTAGACTTGAAGCAAGGGCAGGGCCATGAAGCTTCAATGCTAAATGATCCAGTATTTAGTGGAGTGGAAACACTCCCTCCTCACAAAATGGTTTCAAAGGATGGAAAGTTCAGAGCTGTAAACAGTGAGGAGTCAAAGCCATCAAAGGAAACTGAGGTGAAACCAGCAAAGCATGTGGAAATGAAAGTAAGAAAAGAAGAGGAATTGAAACCAGCAGAAGCTGTGGAATTGAAACCAACAAAATATGAGGCGGTGGAAGCAACAGAGGATGTGGAGTCAAAATCAACTAATGCTGTGGACATGGAACCAGCCAAAGATGTGGAGTTGAAATCAGCTAAGGTTGTGGAATTGGAACCAGCAAAAGATATGGAGTTGAATCATGCAAAGAATGTGGAGATGAAACCATCTGAGGCTTTGCTTTTGAAACGAGTAAAAGATGTAGAGGCAGATAAAGCACAGGTTGTGGAAGATTTGAAGTTGGTTAAAGATATTGAGGAGATGAAATCAAAGCTACTTGAACTTGAACTAAAGCTGAGCCAGGCTGAAGTTACTATCTCGAAGCTAACAGAGGAGAGGAGTTCAAGCATGCAAGAGATAAAAGATTTGAAGGAGCAATTAGGGTATTTGAGTAAAGGTGGTGTGCAACGAGTCGAGTTCCCTGTCATATTTGCTTGCATGGTGGCACTTTTCAGTATCCTCGTTGTTATAGCTATAGCTGTTAAAAGTTTAAGCATGAAGGTAGTATCATCACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005886 GO:0006810 GO:0008150 GO:0012505 GO:0016020 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0071944 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Motile_Sperm

Protein Analysis

388

Amino Acids

43.02

Weight (kDa)

6.2

Isoelectric Point (pI)

40.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003952)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g04180 FvH4_6g04180 FvH4_6g04180 FvH4_6g04180 FvH4_6g04180 FvH4_6g04180 FvH4_6g04180
malus_domestica	MD00G1052100.v1.1 MD12G1230200.v1.1
prunus_persica	Prupe.6G335400_v2.0.a1 Prupe.6G335400_v2.0.a1 Prupe.6G335400_v2.0.a1 Prupe.6G335400_v2.0.a1 Prupe.6G335400_v2.0.a1 Prupe.6G335400_v2.0.a1 Prupe.6G335400_v2.0.a1 Prupe.6G335400_v2.0.a1 Prupe.6G335400_v2.0.a1 Prupe.6G335500_v2.0.a1
pyrus_communis	pycom04g19010 pycom12g21400
rosa_chinensis	RchiOBHm_Chr0c30g0501241 RchiOBHm_Chr0c30g0501251 RchiOBHm_Chr3g0452761 RchiOBHm_Chr3g0452781
rosa_laevigata	RLG00000025570
rosa_multiflora	Rmu_ssc0000156.1_g000002
rosa_roxburghii	Rroxscaffold_6G00429760
rosa_rugosa	Rorug02G0643000
rosa_samantha	Rh3AG045200 Rh3BG047700 Rh3CG046200 Rh3DG046500
rosa_wichuraiana	Rw3G003560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	411
AccII	CGCG	1 cut(s)	296
AciI	CCGC	3 cut(s)	100, 296, 659
AclWI	GGATC	1 cut(s)	449
AcsI	RAATTY	2 cut(s)	4, 191
AcuI	CTGAAG	1 cut(s)	972
AfaI	GTAC	1 cut(s)	150
AfiI	CCNNNNNNNGG	1 cut(s)	161
AflIII	ACRYGT	1 cut(s)	90
AjiI	CACGTC	1 cut(s)	93
AjnI	CCWGG	1 cut(s)	945
AloI	GAACNNNNNNTCC	2 cut(s)	500, 532
Alw26I	GTCTC	1 cut(s)	278
AlwI	GGATC	1 cut(s)	449
AlwNI	CAGNNNCTG	1 cut(s)	629
AoxI	GGCC	1 cut(s)	430
ApoI	RAATTY	2 cut(s)	4, 191
AspS9I	GGNCC	1 cut(s)	430
AsuHPI	GGTGA	3 cut(s)	338, 390, 577
AsuNHI	GCTAGC	1 cut(s)	308
BccI	CCATC	3 cut(s)	503, 556, 820
BciT130I	CCWGG	1 cut(s)	947
BciVI	GTATCC	1 cut(s)	1112
BcoDI	GTCTC	1 cut(s)	278
BfaI	CTAG	1 cut(s)	309
BfmI	CTRYAG	1 cut(s)	1119
BfuI	GTATCC	1 cut(s)	1112
BlpI	GCTNAGC	1 cut(s)	941
Bme1390I	CCNGG	1 cut(s)	947
BmgBI	CACGTC	1 cut(s)	93
BmgT120I	GGNCC	1 cut(s)	430
BmiI	GGNNCC	2 cut(s)	714, 762
BmrFI	CCNGG	1 cut(s)	947
BmtI	GCTAGC	1 cut(s)	312
Bpu10I	CCTNAGC	1 cut(s)	744
Bpu1102I	GCTNAGC	1 cut(s)	941
BpuEI	CTTGAG	1 cut(s)	200
BsaXI	ACNNNNNCTCC	2 cut(s)	469, 499
Bsc4I	CCNNNNNNNGG	1 cut(s)	161
Bse1I	ACTGG	1 cut(s)	458
BseBI	CCWGG	1 cut(s)	947
BseGI	GGATG	3 cut(s)	22, 514, 682
BseLI	CCNNNNNNNGG	1 cut(s)	161
BseMII	CTCAG	5 cut(s)	210, 273, 552, 807, 932
BseNI	ACTGG	1 cut(s)	458
BseRI	GAGGAG	5 cut(s)	477, 551, 917, 992, 997
Bsh1236I	CGCG	1 cut(s)	296
Bsh1285I	CGRYCG	1 cut(s)	100
BshFI	GGCC	1 cut(s)	432
BsiEI	CGRYCG	1 cut(s)	100
BslI	CCNNNNNNNGG	1 cut(s)	161
BsmAI	GTCTC	1 cut(s)	278
BsnI	GGCC	1 cut(s)	432
Bsp143I	GATC	1 cut(s)	454
Bsp1720I	GCTNAGC	1 cut(s)	941
BspACI	CCGC	3 cut(s)	100, 296, 659
BspANI	GGCC	1 cut(s)	432
BspCNI	CTCAG	5 cut(s)	209, 274, 553, 808, 933
BspFNI	CGCG	1 cut(s)	296
BspLI	GGNNCC	2 cut(s)	714, 762
BspOI	GCTAGC	1 cut(s)	312
BspPI	GGATC	1 cut(s)	449
BsrI	ACTGG	1 cut(s)	458
BssMI	GATC	1 cut(s)	454
Bst2UI	CCWGG	1 cut(s)	947
Bst4CI	ACNGT	2 cut(s)	146, 533
Bst6I	CTCTTC	2 cut(s)	339, 600
BstC8I	GCNNGC	4 cut(s)	210, 310, 995, 1081
BstDEI	CTNAG	7 cut(s)	196, 282, 356, 561, 744, 816, 941
BstF5I	GGATG	3 cut(s)	22, 514, 682
BstFNI	CGCG	1 cut(s)	296
BstKTI	GATC	1 cut(s)	457
BstMAI	GTCTC	1 cut(s)	278
BstMBI	GATC	1 cut(s)	454
BstMCI	CGRYCG	1 cut(s)	100
BstMWI	GCNNNNNNNGC	2 cut(s)	665, 860
BstNI	CCWGG	1 cut(s)	947
BstNSI	RCATGY	3 cut(s)	316, 584, 997
BstSCI	CCNGG	1 cut(s)	945
BstSFI	CTRYAG	1 cut(s)	1119
BstUI	CGCG	1 cut(s)	296
BstXI	CCANNNNNNTGG	1 cut(s)	727
BsuI	GTATCC	1 cut(s)	1112
BsuRI	GGCC	1 cut(s)	432
BtrI	CACGTC	1 cut(s)	93
BtsCI	GGATG	3 cut(s)	22, 514, 682
BtsIMutI	CAGTG	1 cut(s)	538
Cac8I	GCNNGC	4 cut(s)	210, 310, 995, 1081
CaiI	CAGNNNCTG	1 cut(s)	629
Cfr13I	GGNCC	1 cut(s)	430
CseI	GACGC	1 cut(s)	302
Csp6I	GTAC	1 cut(s)	149
CspCI	CAANNNNNGTGG	4 cut(s)	564, 599, 780, 815
CviQI	GTAC	1 cut(s)	149
DdeI	CTNAG	7 cut(s)	196, 282, 356, 561, 744, 816, 941
DpnI	GATC	1 cut(s)	456
DpnII	GATC	1 cut(s)	454
Eam1104I	CTCTTC	2 cut(s)	339, 600
EarI	CTCTTC	2 cut(s)	339, 600
Eco57I	CTGAAG	1 cut(s)	972
EcoRI	GAATTC	2 cut(s)	4, 191
EcoRII	CCWGG	1 cut(s)	945
FalI	AAGNNNNNCTT	2 cut(s)	398, 430
FblI	GTMKAC	1 cut(s)	411
FokI	GGATG	3 cut(s)	9, 521, 689
FspBI	CTAG	1 cut(s)	309
HaeIII	GGCC	1 cut(s)	432
HgaI	GACGC	1 cut(s)	302
HindIII	AAGCTT	1 cut(s)	438
HinfI	GANTC	6 cut(s)	19, 383, 539, 683, 784, 1056
HphI	GGTGA	3 cut(s)	338, 390, 577
Hpy166II	GTNNAC	4 cut(s)	149, 412, 529, 706
Hpy188I	TCNGA	4 cut(s)	97, 283, 521, 817
Hpy188III	TCNNGA	2 cut(s)	217, 964
Hpy8I	GTNNAC	4 cut(s)	149, 412, 529, 706
HpyAV	CCTTC	2 cut(s)	1009, 1138
HpyCH4III	ACNGT	2 cut(s)	146, 533
HpyCH4IV	ACGT	2 cut(s)	92, 339
HpyCH4V	TGCA	6 cut(s)	208, 243, 791, 997, 1051, 1083
HpyF10VI	GCNNNNNNNGC	2 cut(s)	665, 860
HpyF3I	CTNAG	7 cut(s)	196, 282, 356, 561, 744, 816, 941
HpySE526I	ACGT	2 cut(s)	92, 339
Kzo9I	GATC	1 cut(s)	454
LmnI	GCTCC	2 cut(s)	77, 1018
MaeI	CTAG	1 cut(s)	309
MaeII	ACGT	2 cut(s)	92, 339
MaeIII	GTNAC	3 cut(s)	199, 396, 955
MalI	GATC	1 cut(s)	456
MboI	GATC	1 cut(s)	454
MboII	GAAGA	4 cut(s)	270, 356, 617, 887
MfeI	CAATTG	1 cut(s)	9
MluCI	AATT	8 cut(s)	4, 9, 32, 191, 611, 635, 755, 1022
MlyI	GAGTC	3 cut(s)	548, 692, 1065
MmeI	TCCRAC	1 cut(s)	120
MseI	TTAA	6 cut(s)	114, 120, 257, 891, 1128, 1136
MspA1I	CMGCKG	1 cut(s)	272
MspR9I	CCNGG	1 cut(s)	947
MunI	CAATTG	1 cut(s)	9
MvaI	CCWGG	1 cut(s)	947
MvnI	CGCG	1 cut(s)	296
MwoI	GCNNNNNNNGC	2 cut(s)	665, 860
NdeII	GATC	1 cut(s)	454
NheI	GCTAGC	1 cut(s)	308
NlaIV	GGNNCC	2 cut(s)	714, 762
NmuCI	GTSAC	1 cut(s)	396
NspI	RCATGY	3 cut(s)	316, 584, 997
PaeI	GCATGC	1 cut(s)	997
PfeI	GAWTC	3 cut(s)	19, 383, 784
PleI	GAGTC	3 cut(s)	547, 691, 1064
PpsI	GAGTC	3 cut(s)	547, 691, 1064
Psp6I	CCWGG	1 cut(s)	945
PspGI	CCWGG	1 cut(s)	945
PspN4I	GGNNCC	2 cut(s)	714, 762
PspPI	GGNCC	1 cut(s)	430
PstNI	CAGNNNCTG	1 cut(s)	629
PvuII	CAGCTG	1 cut(s)	272
RsaI	GTAC	1 cut(s)	150
RsaNI	GTAC	1 cut(s)	149
SaqAI	TTAA	6 cut(s)	114, 120, 257, 891, 1128, 1136
Sau3AI	GATC	1 cut(s)	454
Sau96I	GGNCC	1 cut(s)	430
SchI	GAGTC	3 cut(s)	548, 692, 1065
ScrFI	CCNGG	1 cut(s)	947
SfcI	CTRYAG	1 cut(s)	1119
SmlI	CTYRAG	1 cut(s)	215
SmoI	CTYRAG	1 cut(s)	215
SphI	GCATGC	1 cut(s)	997
Sse9I	AATT	8 cut(s)	4, 9, 32, 191, 611, 635, 755, 1022
SsiI	CCGC	3 cut(s)	100, 296, 659
SspMI	CTAG	1 cut(s)	309
StyD4I	CCNGG	1 cut(s)	945
TaaI	ACNGT	2 cut(s)	146, 533
TaiI	ACGT	2 cut(s)	95, 342
TaqI	TCGA	3 cut(s)	79, 965, 1059
TasI	AATT	8 cut(s)	4, 9, 32, 191, 611, 635, 755, 1022
TfiI	GAWTC	3 cut(s)	19, 383, 784
Tru1I	TTAA	6 cut(s)	114, 120, 257, 891, 1128, 1136
Tru9I	TTAA	6 cut(s)	114, 120, 257, 891, 1128, 1136
TscAI	CASTG	1 cut(s)	538
TseFI	GTSAC	1 cut(s)	396
Tsp45I	GTSAC	1 cut(s)	396
TspDTI	ATGAA	8 cut(s)	11, 17, 71, 450, 605, 821, 923, 1157
TspRI	CASTG	1 cut(s)	538
XapI	RAATTY	2 cut(s)	4, 191
XceI	RCATGY	3 cut(s)	316, 584, 997
XmiI	GTMKAC	1 cut(s)	411
XspI	CTAG	1 cut(s)	309

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.