Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003952

Physical Location & Seq

Genomic Coordinates Reverse (-)

3358397 .. 3361855

Gene Structure 3459 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ41991

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGATGAATTCAATCGTGGAGATTCATCCCAAAGAATTGAAGTTCATAGTTGAGTTGAAGAAGCAAAGCTCATGCTCAATTCGACTTACCAACATGTCCGACCACCATGTTGCTTTTAAGGTTAAAACTACATCCCCGAAGAAATACTGTGTGCGACCAAATGTAGGTGTTATCTTGCCAAAATCAGCTTGTGAATTTTCAGTTACAATGCAAGCTCAAAAGACAGCTCTGCCTGACATGGATTGCAGAGATAAGTTCTTAATCCAAAGCACAATTGTTTCTTCTGGGACAACTGACGCAGATATTGCAGCTAGCATGTTTGCTAAAGATGAGGGCAAACACGTTGAAGAGAAAAAGCTAAGGGTAATCCTTATGAGCCCACCTGATTCGCCAATACTGTCACCAATCAAGGTAGACTTGAAGCAAGGGCAGGGCAATGAAGCTTCAATACTAAATGATCAAGTATTTGGTGGAGTAGAAACCCTCCCTCAACACAAAATGGTTACAAAGGATGTGAAGTTCAGAGTTGTCAATAGTGAGGAGTCAAAGCCATCAAAGGTTACTGAGGTGAAACCAGCCAAGCATGTGGAATTGAAACTAAGAAAAGAAGAGGAGTTGAAACCAGCAAAGGCTGTGGAATTGAAATTACCAAAATATGAGGAGGTAAAAGCAATAAATGATGTGGAGTCAAGGCCAACATATGCTACGGACATGGAACCAGCCAGAGATGTGGAGTTAGAACCAGTTGATGTGGTGGAATTGGAACCAGCAAAAGATATGGAGTTGAAACCATCAGAGGATTTGCTTTTGAAACTAGCAAAAGAGCAGGAGGCTGATAAAGCACAGGTTGTGGAAAATTTGAAGTTAGTTAAAGATATTGAGGAGATGAAATCAAAGCTACTTGAACTTGAACTAAAGCTGAGCCAGGTTTGGTCTTTTCTGAATTTTTTTTTTTTCCAAATTTTCAATTGCGTGTACAAACCGACTCTAGCAGTATTTCTCTGCATAATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005886 GO:0006810 GO:0008150 GO:0012505 GO:0016020 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0071944 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Motile_Sperm

Protein Analysis

337

Amino Acids

38.1

Weight (kDa)

6.17

Isoelectric Point (pI)

40.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Motile_Sperm	PF00635	6 - 111	4.9e-31	MSP (Major sperm protein) domain
Cep192_D6	PF22076	6 - 73	6e-06	Cep192 domain 6

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003952)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g04180 FvH4_6g04180 FvH4_6g04180 FvH4_6g04180 FvH4_6g04180 FvH4_6g04180 FvH4_6g04180
malus_domestica	MD00G1052100.v1.1 MD12G1230200.v1.1
prunus_persica	Prupe.6G335400_v2.0.a1 Prupe.6G335400_v2.0.a1 Prupe.6G335400_v2.0.a1 Prupe.6G335400_v2.0.a1 Prupe.6G335400_v2.0.a1 Prupe.6G335400_v2.0.a1 Prupe.6G335400_v2.0.a1 Prupe.6G335400_v2.0.a1 Prupe.6G335400_v2.0.a1 Prupe.6G335500_v2.0.a1
pyrus_communis	pycom04g19010 pycom12g21400
rosa_chinensis	RchiOBHm_Chr0c30g0501241 RchiOBHm_Chr0c30g0501251 RchiOBHm_Chr3g0452761 RchiOBHm_Chr3g0452781
rosa_laevigata	RLG00000025570
rosa_multiflora	Rmu_ssc0000156.1_g000002
rosa_roxburghii	Rroxscaffold_6G00429760
rosa_rugosa	Rorug02G0643000
rosa_samantha	Rh3AG045200 Rh3BG047700 Rh3CG046200 Rh3DG046500
rosa_wichuraiana	Rw3G003560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	414
AcsI	RAATTY	5 cut(s)	7, 194, 856, 943, 960
AfaI	GTAC	1 cut(s)	977
AfiI	CCNNNNNNNGG	1 cut(s)	164
AflIII	ACRYGT	2 cut(s)	93, 340
AjnI	CCWGG	1 cut(s)	924
AloI	GAACNNNNNNTCC	2 cut(s)	503, 535
AluBI	AGCT	9 cut(s)	69, 188, 215, 227, 311, 358, 443, 898, 919
AluI	AGCT	9 cut(s)	69, 188, 215, 227, 311, 358, 443, 898, 919
AoxI	GGCC	1 cut(s)	692
ApeKI	GCWGC	1 cut(s)	308
ApoI	RAATTY	5 cut(s)	7, 194, 856, 943, 960
AsuHPI	GGTGA	2 cut(s)	393, 580
AsuNHI	GCTAGC	1 cut(s)	311
BanII	GRGCYC	1 cut(s)	380
BarI	GAAGNNNNNNTAC	2 cut(s)	432, 464
BbvI	GCAGC	1 cut(s)	320
BccI	CCATC	2 cut(s)	559, 799
BciT130I	CCWGG	1 cut(s)	926
BclI	TGATCA	1 cut(s)	457
BfaI	CTAG	3 cut(s)	312, 815, 989
BisI	GCNGC	1 cut(s)	309
BlpI	GCTNAGC	1 cut(s)	920
BlsI	GCNGC	1 cut(s)	310
Bme1390I	CCNGG	1 cut(s)	926
BmiI	GGNNCC	2 cut(s)	717, 765
BmrFI	CCNGG	1 cut(s)	926
BmtI	GCTAGC	1 cut(s)	315
Bpu10I	CCTNAGC	1 cut(s)	359
Bpu1102I	GCTNAGC	1 cut(s)	920
Bsc4I	CCNNNNNNNGG	1 cut(s)	164
Bse1I	ACTGG	1 cut(s)	743
Bse3DI	GCAATG	1 cut(s)	442
BseBI	CCWGG	1 cut(s)	926
BseGI	GGATG	3 cut(s)	25, 131, 517
BseLI	CCNNNNNNNGG	1 cut(s)	164
BseMI	GCAATG	1 cut(s)	442
BseMII	CTCAG	2 cut(s)	555, 911
BseNI	ACTGG	1 cut(s)	743
BseRI	GAGGAG	4 cut(s)	554, 626, 674, 896
BseXI	GCAGC	1 cut(s)	320
BshFI	GGCC	1 cut(s)	694
BslFI	GGGAC	1 cut(s)	301
BslI	CCNNNNNNNGG	1 cut(s)	164
BsmFI	GGGAC	1 cut(s)	301
BsnI	GGCC	1 cut(s)	694
Bsp1286I	GDGCHC	1 cut(s)	380
Bsp1407I	TGTACA	1 cut(s)	975
Bsp143I	GATC	1 cut(s)	457
Bsp1720I	GCTNAGC	1 cut(s)	920
BspANI	GGCC	1 cut(s)	694
BspCNI	CTCAG	2 cut(s)	556, 912
BspLI	GGNNCC	2 cut(s)	717, 765
BspOI	GCTAGC	1 cut(s)	315
BsrDI	GCAATG	1 cut(s)	442
BsrGI	TGTACA	1 cut(s)	975
BsrI	ACTGG	1 cut(s)	743
BssMI	GATC	1 cut(s)	457
Bst2UI	CCWGG	1 cut(s)	926
Bst4CI	ACNGT	2 cut(s)	149, 399
Bst6I	CTCTTC	2 cut(s)	342, 603
BstAPI	GCANNNNNTGC	1 cut(s)	305
BstAUI	TGTACA	1 cut(s)	975
BstC8I	GCNNGC	2 cut(s)	213, 313
BstDEI	CTNAG	4 cut(s)	359, 564, 599, 920
BstF5I	GGATG	3 cut(s)	25, 131, 517
BstKTI	GATC	1 cut(s)	460
BstMBI	GATC	1 cut(s)	457
BstMWI	GCNNNNNNNGC	2 cut(s)	305, 839
BstNI	CCWGG	1 cut(s)	926
BstNSI	RCATGY	3 cut(s)	97, 319, 587
BstSCI	CCNGG	1 cut(s)	924
BstV1I	GCAGC	1 cut(s)	320
BstXI	CCANNNNNNTGG	2 cut(s)	586, 730
BsuRI	GGCC	1 cut(s)	694
BtsCI	GGATG	3 cut(s)	25, 131, 517
Cac8I	GCNNGC	2 cut(s)	213, 313
CseI	GACGC	1 cut(s)	305
Csp6I	GTAC	1 cut(s)	976
CspCI	CAANNNNNGTGG	2 cut(s)	615, 650
CviAII	CATG	7 cut(s)	72, 94, 107, 238, 316, 584, 712
CviQI	GTAC	1 cut(s)	976
DdeI	CTNAG	4 cut(s)	359, 564, 599, 920
DpnI	GATC	1 cut(s)	459
DpnII	GATC	1 cut(s)	457
Eam1104I	CTCTTC	2 cut(s)	342, 603
EarI	CTCTTC	2 cut(s)	342, 603
Eco24I	GRGCYC	1 cut(s)	380
EcoRI	GAATTC	1 cut(s)	7
EcoRII	CCWGG	1 cut(s)	924
EcoT38I	GRGCYC	1 cut(s)	380
FaeI	CATG	7 cut(s)	75, 97, 110, 241, 319, 587, 715
FalI	AAGNNNNNCTT	2 cut(s)	401, 433
FaqI	GGGAC	1 cut(s)	301
FatI	CATG	7 cut(s)	71, 93, 106, 237, 315, 583, 711
FauNDI	CATATG	1 cut(s)	700
FbaI	TGATCA	1 cut(s)	457
FblI	GTMKAC	1 cut(s)	414
Fnu4HI	GCNGC	1 cut(s)	309
FokI	GGATG	3 cut(s)	12, 118, 524
FriOI	GRGCYC	1 cut(s)	380
Fsp4HI	GCNGC	1 cut(s)	309
FspBI	CTAG	3 cut(s)	312, 815, 989
GluI	GCNGC	1 cut(s)	309
HaeIII	GGCC	1 cut(s)	694
HgaI	GACGC	1 cut(s)	305
Hin1II	CATG	7 cut(s)	75, 97, 110, 241, 319, 587, 715
HindIII	AAGCTT	1 cut(s)	441
HinfI	GANTC	5 cut(s)	22, 386, 542, 686, 985
HphI	GGTGA	2 cut(s)	393, 580
Hpy166II	GTNNAC	2 cut(s)	415, 976
Hpy188I	TCNGA	4 cut(s)	100, 524, 796, 942
Hpy8I	GTNNAC	2 cut(s)	415, 976
HpyCH4III	ACNGT	2 cut(s)	149, 399
HpyCH4IV	ACGT	1 cut(s)	342
HpyCH4V	TGCA	4 cut(s)	211, 246, 308, 1005
HpyF10VI	GCNNNNNNNGC	2 cut(s)	305, 839
HpyF3I	CTNAG	4 cut(s)	359, 564, 599, 920
HpySE526I	ACGT	1 cut(s)	342
Hsp92II	CATG	7 cut(s)	75, 97, 110, 241, 319, 587, 715
Ksp22I	TGATCA	1 cut(s)	457
Kzo9I	GATC	1 cut(s)	457
Lsp1109I	GCAGC	1 cut(s)	320
MaeI	CTAG	3 cut(s)	312, 815, 989
MaeII	ACGT	1 cut(s)	342
MaeIII	GTNAC	4 cut(s)	202, 399, 502, 559
MalI	GATC	1 cut(s)	459
MboI	GATC	1 cut(s)	457
MboII	GAAGA	5 cut(s)	70, 151, 273, 359, 620
MfeI	CAATTG	2 cut(s)	273, 967
MhlI	GDGCHC	1 cut(s)	380
MlyI	GAGTC	3 cut(s)	551, 695, 979
MmeI	TCCRAC	1 cut(s)	123
MseI	TTAA	4 cut(s)	117, 123, 260, 870
MspR9I	CCNGG	1 cut(s)	926
MunI	CAATTG	2 cut(s)	273, 967
MvaI	CCWGG	1 cut(s)	926
MwoI	GCNNNNNNNGC	2 cut(s)	305, 839
NdeI	CATATG	1 cut(s)	700
NdeII	GATC	1 cut(s)	457
NheI	GCTAGC	1 cut(s)	311
NlaIII	CATG	7 cut(s)	75, 97, 110, 241, 319, 587, 715
NlaIV	GGNNCC	2 cut(s)	717, 765
NmuCI	GTSAC	1 cut(s)	399
NspI	RCATGY	3 cut(s)	97, 319, 587
PciI	ACATGT	1 cut(s)	93
PfeI	GAWTC	2 cut(s)	22, 386
PkrI	GCNGC	1 cut(s)	310
PleI	GAGTC	3 cut(s)	550, 694, 979
PpsI	GAGTC	3 cut(s)	550, 694, 979
PscI	ACATGT	1 cut(s)	93
Psp6I	CCWGG	1 cut(s)	924
PspGI	CCWGG	1 cut(s)	924
PspN4I	GGNNCC	2 cut(s)	717, 765
RsaI	GTAC	1 cut(s)	977
RsaNI	GTAC	1 cut(s)	976
SaqAI	TTAA	4 cut(s)	117, 123, 260, 870
SatI	GCNGC	1 cut(s)	309
Sau3AI	GATC	1 cut(s)	457
SchI	GAGTC	3 cut(s)	551, 695, 979
ScrFI	CCNGG	1 cut(s)	926
SduI	GDGCHC	1 cut(s)	380
SspMI	CTAG	3 cut(s)	312, 815, 989
StyD4I	CCNGG	1 cut(s)	924
TaaI	ACNGT	2 cut(s)	149, 399
TaiI	ACGT	1 cut(s)	345
TaqI	TCGA	1 cut(s)	82
TatI	WGTACW	1 cut(s)	975
TfiI	GAWTC	2 cut(s)	22, 386
Tru1I	TTAA	4 cut(s)	117, 123, 260, 870
Tru9I	TTAA	4 cut(s)	117, 123, 260, 870
TseFI	GTSAC	1 cut(s)	399
TseI	GCWGC	1 cut(s)	308
Tsp45I	GTSAC	1 cut(s)	399
TspDTI	ATGAA	5 cut(s)	14, 20, 34, 453, 902
TspGWI	ACGGA	1 cut(s)	722
XapI	RAATTY	5 cut(s)	7, 194, 856, 943, 960
XceI	RCATGY	3 cut(s)	97, 319, 587
XmiI	GTMKAC	1 cut(s)	414
XspI	CTAG	3 cut(s)	312, 815, 989

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.