Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0003952

Physical Location & Seq

Genomic Coordinates Reverse (-)

22558309 .. 22560235

Gene Structure 1927 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g21400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGACAGACATGGATTGCAAAGATAAGTTCTTAATCCAGAGCACGATTGTTTCTTCTGCGACAACTGAGGAGGATATTACATCTAGCATGTTTTCTAAAGATGGTGGCAAGTACGTTGAAGAGAAAAAGCTAAGAGTTACCCTCGTTAGTCCACCCAACTCACCAACGCTGTCACCAATGAAGGTAGACTTGAAGCAGGGGCTCAGTCATGAACATTCATTTCTAAAAGATCAATTTGGTGGAGTTGAAATCCTCCCTCCGCTGAACAAGGTTACTAACGATGTGAAGTTCACAGCTACTAGTGAGAAGCCAAACCCATCAACGAAGACTGAGTTGAAACCGTCAAAGGATGTAGAGTTGAAACCAGAAAAAGACGTTGAGCTGAAACCAGAAAATGATTTTGAGTTGAAATCAACAAAAGACGTGGAGCTGAAGCCAGCAAAATATGAGGCCTTGGAACCAGAAAAAGATATGGAGGTGAAACCAGAAAAAGAGGCAGAGTTGAAACCAAAAAAAGAGGCGGAGTTGAAACAAGTAATAGATGTGGAGCTAATATCAGCAAAGGATGTGGAATTGAAACCGCCGAAGGCTATGGAGTTTAAACTGGCAAAAGATGTGGAGTTGAATGCAACAAAGATTGTGGAAGATTTGGAGTTAGTTAAGGATATCCAAGAGATGAAATCAAAGCTAAATGCACTTGAATTAAAGCTGAGCCAGGCTGAAGTTACTATTTTAAAGCTAACAGAGGAGAGGAGTTCAAGCATTCAAGAAACGAGAATTATGCAGGAGCAATTAGCACGACTGAGTAGAAGAGGTGTGGATGTGAAAACAATCCATGTCGGATTTCCTCTCCTATTTGTTTGTATGGTGGCGATCATCAGTGTTGCTTTCGGATACTGTCTACGCCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005886 GO:0006810 GO:0008150 GO:0012505 GO:0016020 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0071944 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Motile_Sperm

Protein Analysis

304

Amino Acids

34.12

Weight (kDa)

5.38

Isoelectric Point (pI)

34.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003952)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g04180 FvH4_6g04180 FvH4_6g04180 FvH4_6g04180 FvH4_6g04180 FvH4_6g04180 FvH4_6g04180
malus_domestica	MD00G1052100.v1.1 MD12G1230200.v1.1
prunus_persica	Prupe.6G335400_v2.0.a1 Prupe.6G335400_v2.0.a1 Prupe.6G335400_v2.0.a1 Prupe.6G335400_v2.0.a1 Prupe.6G335400_v2.0.a1 Prupe.6G335400_v2.0.a1 Prupe.6G335400_v2.0.a1 Prupe.6G335400_v2.0.a1 Prupe.6G335400_v2.0.a1 Prupe.6G335500_v2.0.a1
pyrus_communis	pycom04g19010 pycom12g21400
rosa_chinensis	RchiOBHm_Chr0c30g0501241 RchiOBHm_Chr0c30g0501251 RchiOBHm_Chr3g0452761 RchiOBHm_Chr3g0452781
rosa_laevigata	RLG00000025570
rosa_multiflora	Rmu_ssc0000156.1_g000002
rosa_roxburghii	Rroxscaffold_6G00429760
rosa_rugosa	Rorug02G0643000
rosa_samantha	Rh3AG045200 Rh3BG047700 Rh3CG046200 Rh3DG046500
rosa_wichuraiana	Rw3G003560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	186, 901
AciI	CCGC	3 cut(s)	260, 521, 581
AcuI	CTGAAG	2 cut(s)	452, 741
AfaI	GTAC	1 cut(s)	113
AhlI	ACTAGT	1 cut(s)	299
AjiI	CACGTC	1 cut(s)	424
AjnI	CCWGG	1 cut(s)	714
AluBI	AGCT	8 cut(s)	130, 296, 382, 430, 550, 688, 709, 739
AluI	AGCT	8 cut(s)	130, 296, 382, 430, 550, 688, 709, 739
Alw21I	GWGCWC	1 cut(s)	44
AoxI	GGCC	1 cut(s)	450
AsuHPI	GGTGA	3 cut(s)	153, 165, 490
BanII	GRGCYC	1 cut(s)	204
BbsI	GAAGAC	1 cut(s)	332
Bbv12I	GWGCWC	1 cut(s)	44
BccI	CCATC	2 cut(s)	95, 325
BcgI	CGANNNNNNTGC	2 cut(s)	763, 797
BciT130I	CCWGG	1 cut(s)	716
BciVI	GTATCC	1 cut(s)	887
BcuI	ACTAGT	1 cut(s)	299
BfaI	CTAG	2 cut(s)	84, 300
BfuI	GTATCC	1 cut(s)	887
BlpI	GCTNAGC	1 cut(s)	710
Bme1390I	CCNGG	1 cut(s)	716
BmgBI	CACGTC	1 cut(s)	424
BmiI	GGNNCC	1 cut(s)	459
BmrFI	CCNGG	1 cut(s)	716
BpiI	GAAGAC	1 cut(s)	332
BplI	GAGNNNNNCTC	2 cut(s)	126, 158
Bpu1102I	GCTNAGC	1 cut(s)	710
BsaJI	CCNNGG	1 cut(s)	453
Bse1I	ACTGG	1 cut(s)	609
BseBI	CCWGG	1 cut(s)	716
BseDI	CCNNGG	1 cut(s)	453
BseGI	GGATG	3 cut(s)	355, 571, 826
BseMII	CTCAG	5 cut(s)	57, 217, 321, 701, 794
BseNI	ACTGG	1 cut(s)	609
BseRI	GAGGAG	3 cut(s)	83, 761, 766
BshFI	GGCC	1 cut(s)	452
BsiHKAI	GWGCWC	1 cut(s)	44
BsmI	GAATGC	2 cut(s)	631, 762
BsnI	GGCC	1 cut(s)	452
Bsp1286I	GDGCHC	2 cut(s)	44, 204
Bsp143I	GATC	2 cut(s)	229, 873
Bsp1720I	GCTNAGC	1 cut(s)	710
BspACI	CCGC	3 cut(s)	260, 521, 581
BspANI	GGCC	1 cut(s)	452
BspCNI	CTCAG	5 cut(s)	58, 216, 322, 702, 795
BspHI	TCATGA	1 cut(s)	208
BspLI	GGNNCC	1 cut(s)	459
BsrI	ACTGG	1 cut(s)	609
BssECI	CCNNGG	1 cut(s)	453
BssMI	GATC	2 cut(s)	229, 873
BssT1I	CCWWGG	1 cut(s)	453
Bst2UI	CCWGG	1 cut(s)	716
Bst4CI	ACNGT	2 cut(s)	342, 899
Bst6I	CTCTTC	2 cut(s)	114, 805
BstC8I	GCNNGC	1 cut(s)	438
BstDEI	CTNAG	6 cut(s)	66, 131, 203, 330, 710, 803
BstF5I	GGATG	3 cut(s)	355, 571, 826
BstKTI	GATC	2 cut(s)	232, 876
BstMBI	GATC	2 cut(s)	229, 873
BstNI	CCWGG	1 cut(s)	716
BstNSI	RCATGY	1 cut(s)	91
BstSCI	CCNGG	1 cut(s)	714
BstV2I	GAAGAC	1 cut(s)	332
BsuI	GTATCC	1 cut(s)	887
BsuRI	GGCC	1 cut(s)	452
BtrI	CACGTC	1 cut(s)	424
BtsCI	GGATG	3 cut(s)	355, 571, 826
BtsIMutI	CAGTG	1 cut(s)	886
Cac8I	GCNNGC	1 cut(s)	438
CciI	TCATGA	1 cut(s)	208
Csp6I	GTAC	1 cut(s)	112
CspCI	CAANNNNNGTGG	8 cut(s)	405, 440, 549, 584, 597, 621, 632, 656
CviAII	CATG	4 cut(s)	10, 88, 209, 836
CviQI	GTAC	1 cut(s)	112
DdeI	CTNAG	6 cut(s)	66, 131, 203, 330, 710, 803
DpnI	GATC	2 cut(s)	231, 875
DpnII	GATC	2 cut(s)	229, 873
DraI	TTTAAA	2 cut(s)	601, 735
Eam1104I	CTCTTC	2 cut(s)	114, 805
EarI	CTCTTC	2 cut(s)	114, 805
EciI	GGCGGA	1 cut(s)	536
Eco130I	CCWWGG	1 cut(s)	453
Eco147I	AGGCCT	1 cut(s)	452
Eco24I	GRGCYC	1 cut(s)	204
Eco32I	GATATC	1 cut(s)	667
Eco57I	CTGAAG	2 cut(s)	452, 741
EcoRII	CCWGG	1 cut(s)	714
EcoRV	GATATC	1 cut(s)	667
EcoT14I	CCWWGG	1 cut(s)	453
EcoT38I	GRGCYC	1 cut(s)	204
ErhI	CCWWGG	1 cut(s)	453
FaeI	CATG	4 cut(s)	13, 91, 212, 839
FaiI	YATR	9 cut(s)	11, 89, 210, 447, 473, 593, 782, 837, 866
FalI	AAGNNNNNCTT	2 cut(s)	173, 205
FatI	CATG	4 cut(s)	9, 87, 208, 835
FblI	GTMKAC	2 cut(s)	186, 901
FokI	GGATG	3 cut(s)	362, 578, 833
FriOI	GRGCYC	1 cut(s)	204
FspBI	CTAG	2 cut(s)	84, 300
HaeIII	GGCC	1 cut(s)	452
Hin1II	CATG	4 cut(s)	13, 91, 212, 839
HphI	GGTGA	3 cut(s)	153, 165, 490
Hpy166II	GTNNAC	4 cut(s)	152, 187, 291, 902
Hpy188I	TCNGA	2 cut(s)	842, 893
Hpy188III	TCNNGA	3 cut(s)	37, 209, 767
Hpy8I	GTNNAC	4 cut(s)	152, 187, 291, 902
HpyAV	CCTTC	2 cut(s)	175, 580
HpyCH4III	ACNGT	2 cut(s)	342, 899
HpyCH4IV	ACGT	3 cut(s)	114, 375, 423
HpyCH4V	TGCA	4 cut(s)	18, 629, 695, 784
HpyF3I	CTNAG	6 cut(s)	66, 131, 203, 330, 710, 803
HpySE526I	ACGT	3 cut(s)	114, 375, 423
Hsp92II	CATG	4 cut(s)	13, 91, 212, 839
Kzo9I	GATC	2 cut(s)	229, 873
LmnI	GCTCC	3 cut(s)	427, 547, 787
MaeI	CTAG	2 cut(s)	84, 300
MaeII	ACGT	3 cut(s)	114, 375, 423
MaeIII	GTNAC	4 cut(s)	136, 171, 271, 724
MalI	GATC	2 cut(s)	231, 875
MboI	GATC	2 cut(s)	229, 873
MboII	GAAGA	5 cut(s)	45, 131, 337, 656, 822
MhlI	GDGCHC	2 cut(s)	44, 204
MluCI	AATT	5 cut(s)	233, 572, 701, 777, 791
MmeI	TCCRAC	1 cut(s)	820
MseI	TTAA	5 cut(s)	32, 600, 660, 704, 734
MspA1I	CMGCKG	1 cut(s)	262
MspR9I	CCNGG	1 cut(s)	716
MssI	GTTTAAAC	1 cut(s)	601
Mva1269I	GAATGC	2 cut(s)	631, 762
MvaI	CCWGG	1 cut(s)	716
NdeII	GATC	2 cut(s)	229, 873
NlaIII	CATG	4 cut(s)	13, 91, 212, 839
NlaIV	GGNNCC	1 cut(s)	459
NmuCI	GTSAC	1 cut(s)	171
NspI	RCATGY	1 cut(s)	91
PagI	TCATGA	1 cut(s)	208
PceI	AGGCCT	1 cut(s)	452
PctI	GAATGC	2 cut(s)	631, 762
PmeI	GTTTAAAC	1 cut(s)	601
Psp6I	CCWGG	1 cut(s)	714
PspGI	CCWGG	1 cut(s)	714
PspN4I	GGNNCC	1 cut(s)	459
RsaI	GTAC	1 cut(s)	113
RsaNI	GTAC	1 cut(s)	112
SaqAI	TTAA	5 cut(s)	32, 600, 660, 704, 734
Sau3AI	GATC	2 cut(s)	229, 873
ScrFI	CCNGG	1 cut(s)	716
SduI	GDGCHC	2 cut(s)	44, 204
SpeI	ACTAGT	1 cut(s)	299
Sse9I	AATT	5 cut(s)	233, 572, 701, 777, 791
SseBI	AGGCCT	1 cut(s)	452
SsiI	CCGC	3 cut(s)	260, 521, 581
SspMI	CTAG	2 cut(s)	84, 300
StuI	AGGCCT	1 cut(s)	452
StyD4I	CCNGG	1 cut(s)	714
StyI	CCWWGG	1 cut(s)	453
TaaI	ACNGT	2 cut(s)	342, 899
TaiI	ACGT	3 cut(s)	117, 378, 426
TasI	AATT	5 cut(s)	233, 572, 701, 777, 791
Tru1I	TTAA	5 cut(s)	32, 600, 660, 704, 734
Tru9I	TTAA	5 cut(s)	32, 600, 660, 704, 734
TscAI	CASTG	1 cut(s)	886
TseFI	GTSAC	1 cut(s)	171
Tsp45I	GTSAC	1 cut(s)	171
TspDTI	ATGAA	4 cut(s)	194, 207, 225, 692
TspRI	CASTG	1 cut(s)	886
XceI	RCATGY	1 cut(s)	91
XmiI	GTMKAC	2 cut(s)	186, 901
XspI	CTAG	2 cut(s)	84, 300

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.