Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0003952

Physical Location & Seq

Genomic Coordinates Reverse (-)

49953016 .. 49958757

Gene Structure 5742 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00429760.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1146 bp

ATGAATTCAATCGTGGAGATTCATCCCAAAGAATTGAAGTTCGTAGTTGAGTTGAAGAAGCAAAGCTCATGCTCAATTCGACTTACCAACACGTCCGACCACCATGTTGCGTTTAAGGTTAAAACTACATCCCCCAAGAAATACTGTGTGCGACCAAATGTAGGTGTTATCTTGCCAAAATCAGCTTGTGAATTTTCAGTTACAATGCAAGCTCAAAAGACAGCTCTGCCTGATATGGATTGCAGAGATAAGTTCTTAATCCAAAGCACAATTGTTTCTTCTGGGACAACTGACGCAGATATTACAGCTAGCATGTTTGCTAAAGATGAGGGTAAACACGTTGAAGAGAAAAAGCTAAGAGTAATCCTTATCAGCCCACCTGATTCGCCAATACTGTCACCAATCAAGGTAGACTTGAAGCAAGGGCAGGGCAATGAAGCTTCAATACTAAATGATCAAGTATTTGGTGGAGTAGAAACCCTCCCTCAACACAAAATGGTTACAAAGGATGTGAAGTTCAGAGTTGTCAATAGTGAGGAGTCAAAGCCATCAAAGGATACTGAGGTGAAACCAGCCAAGCATGTGGAATTGAAACTAAGAAAAGAAGAGGAGTTGAAACCAGCAAAGGCTGTGGAATTGAAATTACCAAAATATGAGGACGTGGAGTCAAGGCCAACATATGCTATGGACGTGGAACCAGCCAGAGATGTGGAGTTAGAACCAGTTGATGTGGTGGAATTGGAACCAGCAAAAGATATGGAGTTGAAACCTGCAAAGAATGTGGAGTTGAAACCATCAAAGGATTTGCTTTTGAAACTAGCAAAAGACAAGGAGGCAGATAAAGCACAGGTTGTGGAAAATTTGAAGTTAGTTAAAGATATTGAGGAGATGAAATCAAAGCTACTGGAACTTGAACTAAAGCTGAGCCAGGCTGAAGTTACTATCTCAAAGCTCACAGAGGAGAGGAGTTCAAGCATCCAAGAGATAAAAGATTTGCAGAAGCAATTAGGGCATTTGAGTAAAGGGGGTGTGCAACGAGTTGAGTTCCCTCTCCTATTTGGTTGCACGGTGGCACTTTTTAGTGTTCTCCTTGTTACAGCTATAGCTGTTAAAAGTTTGTTCATGAAGGTAGTATCATCCCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005886 GO:0006810 GO:0008150 GO:0012505 GO:0016020 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0071944 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Motile_Sperm

Protein Analysis

381

Amino Acids

42.46

Weight (kDa)

7.6

Isoelectric Point (pI)

40.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Motile_Sperm	PF00635	5 - 109	2.3e-31	MSP (Major sperm protein) domain
Cep192_D6	PF22076	5 - 72	5.9e-06	Cep192 domain 6

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003952)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g04180 FvH4_6g04180 FvH4_6g04180 FvH4_6g04180 FvH4_6g04180 FvH4_6g04180 FvH4_6g04180
malus_domestica	MD00G1052100.v1.1 MD12G1230200.v1.1
prunus_persica	Prupe.6G335400_v2.0.a1 Prupe.6G335400_v2.0.a1 Prupe.6G335400_v2.0.a1 Prupe.6G335400_v2.0.a1 Prupe.6G335400_v2.0.a1 Prupe.6G335400_v2.0.a1 Prupe.6G335400_v2.0.a1 Prupe.6G335400_v2.0.a1 Prupe.6G335400_v2.0.a1 Prupe.6G335500_v2.0.a1
pyrus_communis	pycom04g19010 pycom12g21400
rosa_chinensis	RchiOBHm_Chr0c30g0501241 RchiOBHm_Chr0c30g0501251 RchiOBHm_Chr3g0452761 RchiOBHm_Chr3g0452781
rosa_laevigata	RLG00000025570
rosa_multiflora	Rmu_ssc0000156.1_g000002
rosa_roxburghii	Rroxscaffold_6G00429760
rosa_rugosa	Rorug02G0643000
rosa_samantha	Rh3AG045200 Rh3BG047700 Rh3CG046200 Rh3DG046500
rosa_wichuraiana	Rw3G003560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	778
AccI	GTMKAC	1 cut(s)	411
AcsI	RAATTY	3 cut(s)	4, 191, 859
AcuI	CTGAAG	1 cut(s)	954
AfiI	CCNNNNNNNGG	1 cut(s)	161
AflIII	ACRYGT	2 cut(s)	90, 337
AhdI	GACNNNNNGTC	1 cut(s)	664
AjiI	CACGTC	3 cut(s)	93, 661, 691
AjnI	CCWGG	1 cut(s)	927
AloI	GAACNNNNNNTCC	2 cut(s)	500, 532
AoxI	GGCC	1 cut(s)	671
ApoI	RAATTY	3 cut(s)	4, 191, 859
AsuHPI	GGTGA	2 cut(s)	390, 577
AsuNHI	GCTAGC	1 cut(s)	308
BaeI	ACNNNNGTAYC	2 cut(s)	549, 582
BarI	GAAGNNNNNNTAC	2 cut(s)	429, 461
BccI	CCATC	2 cut(s)	556, 802
BciT130I	CCWGG	1 cut(s)	929
BciVI	GTATCC	1 cut(s)	550
BclI	TGATCA	1 cut(s)	454
BfaI	CTAG	2 cut(s)	309, 818
BfmI	CTRYAG	1 cut(s)	1101
BfuAI	ACCTGC	1 cut(s)	778
BfuI	GTATCC	1 cut(s)	550
BlpI	GCTNAGC	1 cut(s)	923
Bme1390I	CCNGG	1 cut(s)	929
BmeRI	GACNNNNNGTC	1 cut(s)	664
BmgBI	CACGTC	3 cut(s)	93, 661, 691
BmiI	GGNNCC	2 cut(s)	696, 744
BmrFI	CCNGG	1 cut(s)	929
BmsI	GCATC	1 cut(s)	984
BmtI	GCTAGC	1 cut(s)	312
Bpu1102I	GCTNAGC	1 cut(s)	923
Bsc4I	CCNNNNNNNGG	1 cut(s)	161
Bse1I	ACTGG	2 cut(s)	722, 909
Bse3DI	GCAATG	1 cut(s)	439
BseBI	CCWGG	1 cut(s)	929
BseGI	GGATG	5 cut(s)	22, 128, 514, 975, 1136
BseLI	CCNNNNNNNGG	1 cut(s)	161
BseMI	GCAATG	1 cut(s)	439
BseMII	CTCAG	2 cut(s)	552, 914
BseNI	ACTGG	2 cut(s)	722, 909
BseRI	GAGGAG	5 cut(s)	551, 623, 899, 974, 979
BshFI	GGCC	1 cut(s)	673
BslFI	GGGAC	1 cut(s)	298
BslI	CCNNNNNNNGG	1 cut(s)	161
BsmFI	GGGAC	1 cut(s)	298
BsnI	GGCC	1 cut(s)	673
Bsp143I	GATC	1 cut(s)	454
Bsp1720I	GCTNAGC	1 cut(s)	923
BspANI	GGCC	1 cut(s)	673
BspCNI	CTCAG	2 cut(s)	553, 915
BspHI	TCATGA	1 cut(s)	1122
BspLI	GGNNCC	2 cut(s)	696, 744
BspMI	ACCTGC	1 cut(s)	778
BspOI	GCTAGC	1 cut(s)	312
BsrDI	GCAATG	1 cut(s)	439
BsrI	ACTGG	2 cut(s)	722, 909
BssMI	GATC	1 cut(s)	454
Bst2UI	CCWGG	1 cut(s)	929
Bst4CI	ACNGT	3 cut(s)	146, 396, 1069
Bst6I	CTCTTC	2 cut(s)	339, 600
BstC8I	GCNNGC	2 cut(s)	210, 310
BstDEI	CTNAG	4 cut(s)	356, 561, 596, 923
BstF5I	GGATG	5 cut(s)	22, 128, 514, 975, 1136
BstKTI	GATC	1 cut(s)	457
BstMBI	GATC	1 cut(s)	454
BstMWI	GCNNNNNNNGC	2 cut(s)	842, 1009
BstNI	CCWGG	1 cut(s)	929
BstNSI	RCATGY	2 cut(s)	316, 584
BstSCI	CCNGG	1 cut(s)	927
BstSFI	CTRYAG	1 cut(s)	1101
BstXI	CCANNNNNNTGG	2 cut(s)	583, 709
BsuI	GTATCC	1 cut(s)	550
BsuRI	GGCC	1 cut(s)	673
BtrI	CACGTC	3 cut(s)	93, 661, 691
BtsCI	GGATG	5 cut(s)	22, 128, 514, 975, 1136
BveI	ACCTGC	1 cut(s)	778
Cac8I	GCNNGC	2 cut(s)	210, 310
CciI	TCATGA	1 cut(s)	1122
CseI	GACGC	1 cut(s)	302
CspCI	CAANNNNNGTGG	4 cut(s)	612, 647, 762, 797
CviAII	CATG	5 cut(s)	69, 104, 313, 581, 1123
DdeI	CTNAG	4 cut(s)	356, 561, 596, 923
DpnI	GATC	1 cut(s)	456
DpnII	GATC	1 cut(s)	454
DriI	GACNNNNNGTC	1 cut(s)	664
Eam1104I	CTCTTC	2 cut(s)	339, 600
Eam1105I	GACNNNNNGTC	1 cut(s)	664
EarI	CTCTTC	2 cut(s)	339, 600
Eco57I	CTGAAG	1 cut(s)	954
EcoRI	GAATTC	1 cut(s)	4
EcoRII	CCWGG	1 cut(s)	927
FaeI	CATG	5 cut(s)	72, 107, 316, 584, 1126
FalI	AAGNNNNNCTT	2 cut(s)	398, 430
FaqI	GGGAC	1 cut(s)	298
FatI	CATG	5 cut(s)	68, 103, 312, 580, 1122
FauNDI	CATATG	1 cut(s)	679
FbaI	TGATCA	1 cut(s)	454
FblI	GTMKAC	1 cut(s)	411
FokI	GGATG	5 cut(s)	9, 115, 521, 962, 1123
FspBI	CTAG	2 cut(s)	309, 818
HaeIII	GGCC	1 cut(s)	673
HgaI	GACGC	1 cut(s)	302
Hin1II	CATG	5 cut(s)	72, 107, 316, 584, 1126
HindIII	AAGCTT	1 cut(s)	438
HinfI	GANTC	4 cut(s)	19, 383, 539, 665
HphI	GGTGA	2 cut(s)	390, 577
Hpy166II	GTNNAC	2 cut(s)	335, 412
Hpy188I	TCNGA	3 cut(s)	97, 521, 1145
Hpy188III	TCNNGA	1 cut(s)	1123
Hpy8I	GTNNAC	2 cut(s)	335, 412
HpyAV	CCTTC	1 cut(s)	1120
HpyCH4III	ACNGT	3 cut(s)	146, 396, 1069
HpyCH4IV	ACGT	4 cut(s)	92, 339, 660, 690
HpyCH4V	TGCA	6 cut(s)	208, 243, 773, 997, 1033, 1065
HpyF10VI	GCNNNNNNNGC	2 cut(s)	842, 1009
HpyF3I	CTNAG	4 cut(s)	356, 561, 596, 923
HpySE526I	ACGT	4 cut(s)	92, 339, 660, 690
Hsp92II	CATG	5 cut(s)	72, 107, 316, 584, 1126
Ksp22I	TGATCA	1 cut(s)	454
Kzo9I	GATC	1 cut(s)	454
LweI	GCATC	1 cut(s)	984
MaeI	CTAG	2 cut(s)	309, 818
MaeII	ACGT	4 cut(s)	92, 339, 660, 690
MaeIII	GTNAC	5 cut(s)	199, 396, 499, 937, 1093
MalI	GATC	1 cut(s)	456
MboI	GATC	1 cut(s)	454
MboII	GAAGA	4 cut(s)	67, 270, 356, 617
MfeI	CAATTG	1 cut(s)	270
MlyI	GAGTC	2 cut(s)	548, 674
MmeI	TCCRAC	1 cut(s)	120
MseI	TTAA	5 cut(s)	114, 120, 257, 873, 1110
MspR9I	CCNGG	1 cut(s)	929
MunI	CAATTG	1 cut(s)	270
MvaI	CCWGG	1 cut(s)	929
MwoI	GCNNNNNNNGC	2 cut(s)	842, 1009
NdeI	CATATG	1 cut(s)	679
NdeII	GATC	1 cut(s)	454
NheI	GCTAGC	1 cut(s)	308
NlaIII	CATG	5 cut(s)	72, 107, 316, 584, 1126
NlaIV	GGNNCC	2 cut(s)	696, 744
NmuCI	GTSAC	1 cut(s)	396
NspI	RCATGY	2 cut(s)	316, 584
PagI	TCATGA	1 cut(s)	1122
PfeI	GAWTC	2 cut(s)	19, 383
PleI	GAGTC	2 cut(s)	547, 673
PpsI	GAGTC	2 cut(s)	547, 673
Psp6I	CCWGG	1 cut(s)	927
PspGI	CCWGG	1 cut(s)	927
PspN4I	GGNNCC	2 cut(s)	696, 744
SaqAI	TTAA	5 cut(s)	114, 120, 257, 873, 1110
Sau3AI	GATC	1 cut(s)	454
SchI	GAGTC	2 cut(s)	548, 674
ScrFI	CCNGG	1 cut(s)	929
SfaNI	GCATC	1 cut(s)	984
SfcI	CTRYAG	1 cut(s)	1101
SspMI	CTAG	2 cut(s)	309, 818
StyD4I	CCNGG	1 cut(s)	927
TaaI	ACNGT	3 cut(s)	146, 396, 1069
TaiI	ACGT	4 cut(s)	95, 342, 663, 693
TaqI	TCGA	1 cut(s)	79
TfiI	GAWTC	2 cut(s)	19, 383
Tru1I	TTAA	5 cut(s)	114, 120, 257, 873, 1110
Tru9I	TTAA	5 cut(s)	114, 120, 257, 873, 1110
TseFI	GTSAC	1 cut(s)	396
Tsp45I	GTSAC	1 cut(s)	396
TspDTI	ATGAA	6 cut(s)	11, 17, 450, 905, 1111, 1139
XapI	RAATTY	3 cut(s)	4, 191, 859
XceI	RCATGY	2 cut(s)	316, 584
XmiI	GTMKAC	1 cut(s)	411
XspI	CTAG	2 cut(s)	309, 818

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.