Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0003952

Physical Location & Seq

Genomic Coordinates Forward (+)

9714772 .. 9717806

Gene Structure 3035 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1052100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1155 bp

ATGGAACTGTTGGAGATTCAACCAAAGGAATTGAAGTTCTTGTTTGAATTGAAGAAGCAAAGCTCATGCTCGATTCGGCTTACCAACCTGACCAACAGCTATGTTGCTTTTAAGGTTAAGACTACGTCCCCTAAGAAATACTGTGTGGTCCCAAATGTTGGTGTTGTCTTACCAAAATCAACTTCTGAGTTTTCGGTTACAATGCAAGCACCACGAACCGGTATGGTAGATATGGAATGCAAAGATAAGTTTTTAATCCAGAGCACGATTGTTTCTTCTAGGACAACTGACGAGGATATTACAGCTAGCATGTTTTCTAAAGACGGTGGCAAGTACATTGAAGAGAAAAAGCTAAGAGTAACCCTCATTAGTCCACCCAATTCCCCAATGCTGTCACCAATGAAGGTAGACTTGAAGCAGGGGCTTGGCTATGAACATTCAGTTTTAAAAGATCAATTCGGTGGAGTTGAAATCCTCCCTTCGCTGAACAAGGTTGCTAAGGATGTGAAGTTCACAGCTACTAATGAGATGCCAAAGCCATCAACGGGTACTAATGAGAAGCCAAAACCATCAAAGAATGTAGAGTTGAAACCAGAAAAAGACTTTGAAGTGAAACCAGAAAAAGATTTTGAGTTGAAACCAGAAAAAGACGTGGAGTTGAAGCCAGCAAAATATGAGGCATTGGAACCAGAAAAAGAGGCGGAGTTGAAGCCAGCAAAATATGAGGCATTGGAACCAGAAAAAGAGGCGGAGTTGAAACCAGTAAAAGATGTGGAACTAGAATCAGCAAAGGATGTGGAGTTGAAACCAGTAAAAGATGTGGAACTAAAATCAGCAAAGGATGTGGAGTTGAAACCAGAAAAAGAGGTGGAGTTGAAACCCGAAAAAGAGGTTGAATTGAAACCAAAAAAAGAGGCGGAGTTGAAACCAGTAAATGACGTGGAACTAAAATCAGCAAAGGATGTGGAGTTGAAGAAACCGCCAAATGCTACGGAGTTGAAACTAGAAAAAGATGTGGAGTTGAATGCAACAAAGATTGTGGAAGATTTGAAGTTGGCGAAGGATATCCAAGAGATGAAATCAAAGCTAAATGCACTTGAATTAAAGCTGAGCCAGGTTTTGGTCCCTAGCAGAATTTTGTTTCGAAACATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005886 GO:0006810 GO:0008150 GO:0012505 GO:0016020 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0071944 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Motile_Sperm

Protein Analysis

385

Amino Acids

43.35

Weight (kDa)

6.29

Isoelectric Point (pI)

29.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Motile_Sperm	PF00635	4 - 108	1.5e-28	MSP (Major sperm protein) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003952)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g04180 FvH4_6g04180 FvH4_6g04180 FvH4_6g04180 FvH4_6g04180 FvH4_6g04180 FvH4_6g04180
malus_domestica	MD00G1052100.v1.1 MD12G1230200.v1.1
prunus_persica	Prupe.6G335400_v2.0.a1 Prupe.6G335400_v2.0.a1 Prupe.6G335400_v2.0.a1 Prupe.6G335400_v2.0.a1 Prupe.6G335400_v2.0.a1 Prupe.6G335400_v2.0.a1 Prupe.6G335400_v2.0.a1 Prupe.6G335400_v2.0.a1 Prupe.6G335400_v2.0.a1 Prupe.6G335500_v2.0.a1
pyrus_communis	pycom04g19010 pycom12g21400
rosa_chinensis	RchiOBHm_Chr0c30g0501241 RchiOBHm_Chr0c30g0501251 RchiOBHm_Chr3g0452761 RchiOBHm_Chr3g0452781
rosa_laevigata	RLG00000025570
rosa_multiflora	Rmu_ssc0000156.1_g000002
rosa_roxburghii	Rroxscaffold_6G00429760
rosa_rugosa	Rorug02G0643000
rosa_samantha	Rh3AG045200 Rh3BG047700 Rh3CG046200 Rh3DG046500
rosa_wichuraiana	Rw3G003560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	158, 1120
AccI	GTMKAC	1 cut(s)	408
AciI	CCGC	4 cut(s)	701, 749, 917, 980
AcsI	RAATTY	1 cut(s)	1134
AfaI	GTAC	2 cut(s)	335, 550
AfiI	CCNNNNNNNGG	4 cut(s)	158, 218, 545, 1120
AgeI	ACCGGT	1 cut(s)	218
AjiI	CACGTC	2 cut(s)	652, 940
AjnI	CCWGG	1 cut(s)	1113
AjuI	GAANNNNNNNTTGG	2 cut(s)	166, 198
AloI	GAACNNNNNNTCC	4 cut(s)	20, 52, 494, 526
AluBI	AGCT	7 cut(s)	63, 99, 305, 352, 518, 1087, 1108
AluI	AGCT	7 cut(s)	63, 99, 305, 352, 518, 1087, 1108
Alw21I	GWGCWC	1 cut(s)	266
ApoI	RAATTY	1 cut(s)	1134
AsiGI	ACCGGT	1 cut(s)	218
AspS9I	GGNCC	2 cut(s)	148, 1123
AsuHPI	GGTGA	1 cut(s)	387
AsuII	TTCGAA	1 cut(s)	1144
AsuNHI	GCTAGC	1 cut(s)	305
AvaII	GGWCC	2 cut(s)	148, 1123
Bbv12I	GWGCWC	1 cut(s)	266
BccI	CCATC	2 cut(s)	547, 577
BciT130I	CCWGG	1 cut(s)	1115
BfaI	CTAG	5 cut(s)	279, 306, 779, 1004, 1128
BlpI	GCTNAGC	1 cut(s)	1109
Bme1390I	CCNGG	1 cut(s)	1115
Bme18I	GGWCC	2 cut(s)	148, 1123
BmgBI	CACGTC	2 cut(s)	652, 940
BmgT120I	GGNCC	2 cut(s)	148, 1123
BmiI	GGNNCC	4 cut(s)	150, 687, 735, 1125
BmrFI	CCNGG	1 cut(s)	1115
BmsI	GCATC	1 cut(s)	519
BmtI	GCTAGC	1 cut(s)	309
BplI	GAGNNNNNCTC	2 cut(s)	348, 380
Bpu10I	CCTNAGC	1 cut(s)	498
Bpu1102I	GCTNAGC	1 cut(s)	1109
Bpu14I	TTCGAA	1 cut(s)	1144
BsaWI	WCCGGW	1 cut(s)	218
Bsc4I	CCNNNNNNNGG	4 cut(s)	158, 218, 545, 1120
Bse118I	RCCGGY	1 cut(s)	218
Bse1I	ACTGG	3 cut(s)	761, 809, 929
BseBI	CCWGG	1 cut(s)	1115
BseGI	GGATG	4 cut(s)	508, 799, 847, 967
BseLI	CCNNNNNNNGG	4 cut(s)	158, 218, 545, 1120
BseMII	CTCAG	2 cut(s)	177, 1100
BseNI	ACTGG	3 cut(s)	761, 809, 929
BshTI	ACCGGT	1 cut(s)	218
BsiHKAI	GWGCWC	1 cut(s)	266
BsiSI	CCGG	1 cut(s)	219
BslFI	GGGAC	3 cut(s)	112, 134, 1109
BslI	CCNNNNNNNGG	4 cut(s)	158, 218, 545, 1120
BsmFI	GGGAC	3 cut(s)	112, 134, 1109
BsmI	GAATGC	2 cut(s)	242, 1030
Bsp119I	TTCGAA	1 cut(s)	1144
Bsp1286I	GDGCHC	1 cut(s)	266
Bsp143I	GATC	1 cut(s)	451
Bsp1720I	GCTNAGC	1 cut(s)	1109
BspACI	CCGC	4 cut(s)	701, 749, 917, 980
BspCNI	CTCAG	2 cut(s)	178, 1101
BspLI	GGNNCC	4 cut(s)	150, 687, 735, 1125
BspOI	GCTAGC	1 cut(s)	309
BspT104I	TTCGAA	1 cut(s)	1144
BsrFI	RCCGGY	1 cut(s)	218
BsrI	ACTGG	3 cut(s)	761, 809, 929
BssAI	RCCGGY	1 cut(s)	218
BssMI	GATC	1 cut(s)	451
Bst2UI	CCWGG	1 cut(s)	1115
Bst4CI	ACNGT	3 cut(s)	9, 143, 326
Bst6I	CTCTTC	1 cut(s)	336
BstBI	TTCGAA	1 cut(s)	1144
BstC8I	GCNNGC	4 cut(s)	207, 307, 666, 714
BstDEI	CTNAG	5 cut(s)	132, 186, 353, 498, 1109
BstF5I	GGATG	4 cut(s)	508, 799, 847, 967
BstKTI	GATC	1 cut(s)	454
BstMBI	GATC	1 cut(s)	451
BstNI	CCWGG	1 cut(s)	1115
BstNSI	RCATGY	1 cut(s)	313
BstSCI	CCNGG	1 cut(s)	1113
BtrI	CACGTC	2 cut(s)	652, 940
BtsCI	GGATG	4 cut(s)	508, 799, 847, 967
Cac8I	GCNNGC	4 cut(s)	207, 307, 666, 714
Cfr10I	RCCGGY	1 cut(s)	218
Cfr13I	GGNCC	2 cut(s)	148, 1123
Csp6I	GTAC	2 cut(s)	334, 549
CspAI	ACCGGT	1 cut(s)	218
CspCI	CAANNNNNGTGG	8 cut(s)	777, 812, 825, 860, 945, 980, 1020, 1055
CviAII	CATG	2 cut(s)	66, 310
CviQI	GTAC	2 cut(s)	334, 549
DdeI	CTNAG	5 cut(s)	132, 186, 353, 498, 1109
DpnI	GATC	1 cut(s)	453
DpnII	GATC	1 cut(s)	451
DraI	TTTAAA	1 cut(s)	447
Eam1104I	CTCTTC	1 cut(s)	336
EarI	CTCTTC	1 cut(s)	336
EciI	GGCGGA	3 cut(s)	716, 764, 932
Eco32I	GATATC	1 cut(s)	1066
Eco47I	GGWCC	2 cut(s)	148, 1123
EcoRII	CCWGG	1 cut(s)	1113
EcoRV	GATATC	1 cut(s)	1066
FaeI	CATG	2 cut(s)	69, 313
FalI	AAGNNNNNCTT	2 cut(s)	395, 427
FaqI	GGGAC	3 cut(s)	112, 134, 1109
FatI	CATG	2 cut(s)	65, 309
FauNDI	CATATG	1 cut(s)	1151
FblI	GTMKAC	1 cut(s)	408
FokI	GGATG	4 cut(s)	515, 806, 854, 974
FspBI	CTAG	5 cut(s)	279, 306, 779, 1004, 1128
HapII	CCGG	1 cut(s)	219
Hin1II	CATG	2 cut(s)	69, 313
HinfI	GANTC	3 cut(s)	16, 73, 782
HpaII	CCGG	1 cut(s)	219
HphI	GGTGA	1 cut(s)	387
Hpy166II	GTNNAC	3 cut(s)	374, 409, 513
Hpy188I	TCNGA	1 cut(s)	187
Hpy188III	TCNNGA	1 cut(s)	259
Hpy8I	GTNNAC	3 cut(s)	374, 409, 513
HpyAV	CCTTC	3 cut(s)	397, 489, 1054
HpyCH4III	ACNGT	3 cut(s)	9, 143, 326
HpyCH4IV	ACGT	3 cut(s)	125, 651, 939
HpyCH4V	TGCA	4 cut(s)	205, 240, 1028, 1094
HpyF3I	CTNAG	5 cut(s)	132, 186, 353, 498, 1109
HpySE526I	ACGT	3 cut(s)	125, 651, 939
Hsp92II	CATG	2 cut(s)	69, 313
Kzo9I	GATC	1 cut(s)	451
LweI	GCATC	1 cut(s)	519
MaeI	CTAG	5 cut(s)	279, 306, 779, 1004, 1128
MaeII	ACGT	3 cut(s)	125, 651, 939
MaeIII	GTNAC	3 cut(s)	196, 358, 393
MalI	GATC	1 cut(s)	453
MboI	GATC	1 cut(s)	451
MboII	GAAGA	5 cut(s)	64, 267, 353, 985, 1055
MhlI	GDGCHC	1 cut(s)	266
MluCI	AATT	7 cut(s)	29, 47, 379, 455, 896, 1100, 1134
MseI	TTAA	5 cut(s)	111, 117, 254, 446, 1103
MspI	CCGG	1 cut(s)	219
MspR9I	CCNGG	1 cut(s)	1115
Mva1269I	GAATGC	2 cut(s)	242, 1030
MvaI	CCWGG	1 cut(s)	1115
NdeI	CATATG	1 cut(s)	1151
NdeII	GATC	1 cut(s)	451
NheI	GCTAGC	1 cut(s)	305
NlaIII	CATG	2 cut(s)	69, 313
NlaIV	GGNNCC	4 cut(s)	150, 687, 735, 1125
NmuCI	GTSAC	1 cut(s)	393
NspI	RCATGY	1 cut(s)	313
NspV	TTCGAA	1 cut(s)	1144
PctI	GAATGC	2 cut(s)	242, 1030
PfeI	GAWTC	3 cut(s)	16, 73, 782
PflFI	GACNNNGTC	1 cut(s)	124
PflMI	CCANNNNNTGG	2 cut(s)	158, 1120
PinAI	ACCGGT	1 cut(s)	218
Psp6I	CCWGG	1 cut(s)	1113
PspGI	CCWGG	1 cut(s)	1113
PspN4I	GGNNCC	4 cut(s)	150, 687, 735, 1125
PspPI	GGNCC	2 cut(s)	148, 1123
PsyI	GACNNNGTC	1 cut(s)	124
RsaI	GTAC	2 cut(s)	335, 550
RsaNI	GTAC	2 cut(s)	334, 549
SaqAI	TTAA	5 cut(s)	111, 117, 254, 446, 1103
Sau3AI	GATC	1 cut(s)	451
Sau96I	GGNCC	2 cut(s)	148, 1123
ScrFI	CCNGG	1 cut(s)	1115
SduI	GDGCHC	1 cut(s)	266
SfaNI	GCATC	1 cut(s)	519
SfuI	TTCGAA	1 cut(s)	1144
SinI	GGWCC	2 cut(s)	148, 1123
Sse9I	AATT	7 cut(s)	29, 47, 379, 455, 896, 1100, 1134
SsiI	CCGC	4 cut(s)	701, 749, 917, 980
SspMI	CTAG	5 cut(s)	279, 306, 779, 1004, 1128
StyD4I	CCNGG	1 cut(s)	1113
TaaI	ACNGT	3 cut(s)	9, 143, 326
TaiI	ACGT	3 cut(s)	128, 654, 942
TaqI	TCGA	2 cut(s)	71, 1144
TasI	AATT	7 cut(s)	29, 47, 379, 455, 896, 1100, 1134
TatI	WGTACW	1 cut(s)	333
TfiI	GAWTC	3 cut(s)	16, 73, 782
Tru1I	TTAA	5 cut(s)	111, 117, 254, 446, 1103
Tru9I	TTAA	5 cut(s)	111, 117, 254, 446, 1103
TseFI	GTSAC	1 cut(s)	393
Tsp45I	GTSAC	1 cut(s)	393
TspDTI	ATGAA	3 cut(s)	416, 447, 1091
TspGWI	ACGGA	1 cut(s)	1007
Tth111I	GACNNNGTC	1 cut(s)	124
Van91I	CCANNNNNTGG	2 cut(s)	158, 1120
VpaK11BI	GGWCC	2 cut(s)	148, 1123
XapI	RAATTY	1 cut(s)	1134
XceI	RCATGY	1 cut(s)	313
XmiI	GTMKAC	1 cut(s)	408
XspI	CTAG	5 cut(s)	279, 306, 779, 1004, 1128

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.