Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0003952

Physical Location & Seq

Genomic Coordinates Forward (+)

46766287 .. 46770462

Gene Structure 4176 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000025570

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1164 bp

ATGATGAATTCAATCGTGGAGATTCATCCCAAAGAATTGAAGTTCGTAGTTGAGTTGAAGAAGCAAAGCTCATGCTCAATTCGACTTACCAACACGTCCGACCACCATGTTGCTTTTAAGGTTAAAACTACATCCCCCAAGAAATACTGTGTGCGACCAAATGTAGGTGTTATCTTGCCAAAATCAGCTTGCGAATTTTCAGTTACAATGCAAGCTCAAAAGACAGCTCCGACTGAGGATTGCAGAGATAAGTTCTTAATCCAAAGCACAATTGTTTCTTCTGGGACAGCTGACGCGGATATTACAGCTAGCATGTTTGCTAAAGATGAGGGCAAATACGTTGAAGAGAAAAAGCTAAGAGTAATCCTTATCAGCCCACCTGATTCGCCAATACTGTCACCAATCAAGGTAGACTTGAAGCAAGGGCAGGGCAATGAAGCTTCAATACTAAATGATCAAGTATTTGGTGGAGTAGAAACCCTCCCTCAACACAAAATGGTTACAAAGGATTTGAAGTTCAGAGTTGTCAATAGTGAGGAGTCAAAGCCATCAAGGGATACTGAGGTGACACCAGCCAAGCATGTGGAATTGAAACTAAGAAAAGAAGAGGAGTTGAAACCAGCAAAGGCTGTGGAATTGAAATTACCAAAATATGAGGAGGTAAAACCAATAAAGGATGTGGAGTCAAGGCCAACATATGCTATGGATGTGGAACCAGCCAGAGATGTGGAGTTAAAACCTGTTGATGTTGTGGAATTGGAACCAGCAAAAGATATGGAGTTGAAACCTGCAAAGAATGTGGAGTTGAAACCATCAGAGGATTTGCTTTTGAAACTAGCAAAAGATGTGGAGGCTGATAAAGCACAGGTTGTGGAAGATTTGAAGTTAGTTAAAGATATTGAGGAGATGAAATCAAAGCTACTTGAACTTGAACTAAAGCTGAGCCAGGCTGAAGTTACTATCTCAAAGCTGACAGAGGAGAGGAGTTCAAGCATCCAAGAGATAAAAGATTTACAGAAGCAATTAGGGCATTTGAGTAAAGGTGGTGTGCAACAAATCGAGTTCCCTCTCTTATTTGGTTGCACGGTGGCACTTTTTAGTGTTCTCCTTGTTACAGCTATAGCTGTTAAAAGTTTGTGCATGAAGGTAGTATCATCCCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005886 GO:0006810 GO:0008150 GO:0012505 GO:0016020 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0071944 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Motile_Sperm

Protein Analysis

388

Amino Acids

43.08

Weight (kDa)

6.39

Isoelectric Point (pI)

44.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Motile_Sperm	PF00635	6 - 109	6e-32	MSP (Major sperm protein) domain
Cep192_D6	PF22076	6 - 75	4.8e-06	Cep192 domain 6

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003952)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g04180 FvH4_6g04180 FvH4_6g04180 FvH4_6g04180 FvH4_6g04180 FvH4_6g04180 FvH4_6g04180
malus_domestica	MD00G1052100.v1.1 MD12G1230200.v1.1
prunus_persica	Prupe.6G335400_v2.0.a1 Prupe.6G335400_v2.0.a1 Prupe.6G335400_v2.0.a1 Prupe.6G335400_v2.0.a1 Prupe.6G335400_v2.0.a1 Prupe.6G335400_v2.0.a1 Prupe.6G335400_v2.0.a1 Prupe.6G335400_v2.0.a1 Prupe.6G335400_v2.0.a1 Prupe.6G335500_v2.0.a1
pyrus_communis	pycom04g19010 pycom12g21400
rosa_chinensis	RchiOBHm_Chr0c30g0501241 RchiOBHm_Chr0c30g0501251 RchiOBHm_Chr3g0452761 RchiOBHm_Chr3g0452781
rosa_laevigata	RLG00000025570
rosa_multiflora	Rmu_ssc0000156.1_g000002
rosa_roxburghii	Rroxscaffold_6G00429760
rosa_rugosa	Rorug02G0643000
rosa_samantha	Rh3AG045200 Rh3BG047700 Rh3CG046200 Rh3DG046500
rosa_wichuraiana	Rw3G003560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	796
AccI	GTMKAC	1 cut(s)	411
AccII	CGCG	1 cut(s)	296
AciI	CCGC	1 cut(s)	296
AcsI	RAATTY	2 cut(s)	7, 194
AcuI	CTGAAG	1 cut(s)	972
AfiI	CCNNNNNNNGG	1 cut(s)	164
AflIII	ACRYGT	1 cut(s)	93
AjiI	CACGTC	1 cut(s)	96
AjnI	CCWGG	1 cut(s)	945
AloI	GAACNNNNNNTCC	2 cut(s)	500, 532
AoxI	GGCC	1 cut(s)	689
ApoI	RAATTY	2 cut(s)	7, 194
AsuHPI	GGTGA	2 cut(s)	390, 577
AsuNHI	GCTAGC	1 cut(s)	308
BaeI	ACNNNNGTAYC	2 cut(s)	549, 582
BarI	GAAGNNNNNNTAC	2 cut(s)	429, 461
BccI	CCATC	2 cut(s)	556, 820
BciT130I	CCWGG	1 cut(s)	947
BciVI	GTATCC	1 cut(s)	550
BclI	TGATCA	1 cut(s)	454
BfaI	CTAG	2 cut(s)	309, 836
BfmI	CTRYAG	1 cut(s)	1119
BfuAI	ACCTGC	1 cut(s)	796
BfuI	GTATCC	1 cut(s)	550
BlpI	GCTNAGC	1 cut(s)	941
Bme1390I	CCNGG	1 cut(s)	947
BmgBI	CACGTC	1 cut(s)	96
BmiI	GGNNCC	2 cut(s)	714, 762
BmrFI	CCNGG	1 cut(s)	947
BmsI	GCATC	1 cut(s)	1002
BmtI	GCTAGC	1 cut(s)	312
Bpu1102I	GCTNAGC	1 cut(s)	941
Bsc4I	CCNNNNNNNGG	1 cut(s)	164
Bse3DI	GCAATG	1 cut(s)	439
BseBI	CCWGG	1 cut(s)	947
BseGI	GGATG	6 cut(s)	25, 131, 682, 712, 993, 1154
BseLI	CCNNNNNNNGG	1 cut(s)	164
BseMI	GCAATG	1 cut(s)	439
BseMII	CTCAG	3 cut(s)	225, 552, 932
BseRI	GAGGAG	6 cut(s)	551, 623, 671, 917, 992, 997
Bsh1236I	CGCG	1 cut(s)	296
BshFI	GGCC	1 cut(s)	691
BslFI	GGGAC	1 cut(s)	298
BslI	CCNNNNNNNGG	1 cut(s)	164
BsmFI	GGGAC	1 cut(s)	298
BsnI	GGCC	1 cut(s)	691
Bsp143I	GATC	1 cut(s)	454
Bsp1720I	GCTNAGC	1 cut(s)	941
BspACI	CCGC	1 cut(s)	296
BspANI	GGCC	1 cut(s)	691
BspCNI	CTCAG	3 cut(s)	226, 553, 933
BspFNI	CGCG	1 cut(s)	296
BspLI	GGNNCC	2 cut(s)	714, 762
BspMI	ACCTGC	1 cut(s)	796
BspOI	GCTAGC	1 cut(s)	312
BsrDI	GCAATG	1 cut(s)	439
BssMI	GATC	1 cut(s)	454
Bst2UI	CCWGG	1 cut(s)	947
Bst4CI	ACNGT	3 cut(s)	149, 396, 1087
Bst6I	CTCTTC	2 cut(s)	339, 600
BstC8I	GCNNGC	3 cut(s)	190, 213, 310
BstDEI	CTNAG	5 cut(s)	234, 356, 561, 596, 941
BstF5I	GGATG	6 cut(s)	25, 131, 682, 712, 993, 1154
BstFNI	CGCG	1 cut(s)	296
BstKTI	GATC	1 cut(s)	457
BstMBI	GATC	1 cut(s)	454
BstMWI	GCNNNNNNNGC	2 cut(s)	860, 1027
BstNI	CCWGG	1 cut(s)	947
BstNSI	RCATGY	2 cut(s)	316, 584
BstSCI	CCNGG	1 cut(s)	945
BstSFI	CTRYAG	1 cut(s)	1119
BstUI	CGCG	1 cut(s)	296
BstXI	CCANNNNNNTGG	2 cut(s)	583, 727
BsuI	GTATCC	1 cut(s)	550
BsuRI	GGCC	1 cut(s)	691
BtrI	CACGTC	1 cut(s)	96
BtsCI	GGATG	6 cut(s)	25, 131, 682, 712, 993, 1154
BveI	ACCTGC	1 cut(s)	796
Cac8I	GCNNGC	3 cut(s)	190, 213, 310
CseI	GACGC	1 cut(s)	302
CspCI	CAANNNNNGTGG	6 cut(s)	612, 647, 780, 815, 828, 863
CviAII	CATG	5 cut(s)	72, 107, 313, 581, 1141
DdeI	CTNAG	5 cut(s)	234, 356, 561, 596, 941
DpnI	GATC	1 cut(s)	456
DpnII	GATC	1 cut(s)	454
Eam1104I	CTCTTC	2 cut(s)	339, 600
EarI	CTCTTC	2 cut(s)	339, 600
Eco57I	CTGAAG	1 cut(s)	972
EcoRI	GAATTC	1 cut(s)	7
EcoRII	CCWGG	1 cut(s)	945
FaeI	CATG	5 cut(s)	75, 110, 316, 584, 1144
FalI	AAGNNNNNCTT	2 cut(s)	398, 430
FaqI	GGGAC	1 cut(s)	298
FatI	CATG	5 cut(s)	71, 106, 312, 580, 1140
FauNDI	CATATG	1 cut(s)	697
FbaI	TGATCA	1 cut(s)	454
FblI	GTMKAC	1 cut(s)	411
FokI	GGATG	6 cut(s)	12, 118, 689, 719, 980, 1141
FspBI	CTAG	2 cut(s)	309, 836
HaeIII	GGCC	1 cut(s)	691
HgaI	GACGC	1 cut(s)	302
Hin1II	CATG	5 cut(s)	75, 110, 316, 584, 1144
HindIII	AAGCTT	1 cut(s)	438
HinfI	GANTC	4 cut(s)	22, 383, 539, 683
HphI	GGTGA	2 cut(s)	390, 577
Hpy166II	GTNNAC	1 cut(s)	412
Hpy188I	TCNGA	5 cut(s)	100, 231, 521, 817, 1163
Hpy8I	GTNNAC	1 cut(s)	412
HpyAV	CCTTC	1 cut(s)	1138
HpyCH4III	ACNGT	3 cut(s)	149, 396, 1087
HpyCH4IV	ACGT	2 cut(s)	95, 339
HpyCH4V	TGCA	6 cut(s)	211, 243, 791, 1051, 1083, 1140
HpyF10VI	GCNNNNNNNGC	2 cut(s)	860, 1027
HpyF3I	CTNAG	5 cut(s)	234, 356, 561, 596, 941
HpySE526I	ACGT	2 cut(s)	95, 339
Hsp92II	CATG	5 cut(s)	75, 110, 316, 584, 1144
Ksp22I	TGATCA	1 cut(s)	454
Kzo9I	GATC	1 cut(s)	454
LmnI	GCTCC	1 cut(s)	232
LweI	GCATC	1 cut(s)	1002
MaeI	CTAG	2 cut(s)	309, 836
MaeII	ACGT	2 cut(s)	95, 339
MaeIII	GTNAC	6 cut(s)	202, 396, 499, 565, 955, 1111
MalI	GATC	1 cut(s)	456
MboI	GATC	1 cut(s)	454
MboII	GAAGA	5 cut(s)	70, 270, 356, 617, 887
MfeI	CAATTG	1 cut(s)	270
MlyI	GAGTC	2 cut(s)	548, 692
MmeI	TCCRAC	2 cut(s)	123, 254
MseI	TTAA	6 cut(s)	117, 123, 257, 734, 891, 1128
MspA1I	CMGCKG	1 cut(s)	290
MspR9I	CCNGG	1 cut(s)	947
MunI	CAATTG	1 cut(s)	270
MvaI	CCWGG	1 cut(s)	947
MvnI	CGCG	1 cut(s)	296
MwoI	GCNNNNNNNGC	2 cut(s)	860, 1027
NdeI	CATATG	1 cut(s)	697
NdeII	GATC	1 cut(s)	454
NheI	GCTAGC	1 cut(s)	308
NlaIII	CATG	5 cut(s)	75, 110, 316, 584, 1144
NlaIV	GGNNCC	2 cut(s)	714, 762
NmuCI	GTSAC	2 cut(s)	396, 565
NspI	RCATGY	2 cut(s)	316, 584
PfeI	GAWTC	2 cut(s)	22, 383
PleI	GAGTC	2 cut(s)	547, 691
PpsI	GAGTC	2 cut(s)	547, 691
Psp6I	CCWGG	1 cut(s)	945
PspGI	CCWGG	1 cut(s)	945
PspN4I	GGNNCC	2 cut(s)	714, 762
PvuII	CAGCTG	1 cut(s)	290
SaqAI	TTAA	6 cut(s)	117, 123, 257, 734, 891, 1128
Sau3AI	GATC	1 cut(s)	454
SchI	GAGTC	2 cut(s)	548, 692
ScrFI	CCNGG	1 cut(s)	947
SfaNI	GCATC	1 cut(s)	1002
SfcI	CTRYAG	1 cut(s)	1119
SsiI	CCGC	1 cut(s)	296
SspMI	CTAG	2 cut(s)	309, 836
StyD4I	CCNGG	1 cut(s)	945
TaaI	ACNGT	3 cut(s)	149, 396, 1087
TaiI	ACGT	2 cut(s)	98, 342
TaqI	TCGA	2 cut(s)	82, 1059
TfiI	GAWTC	2 cut(s)	22, 383
Tru1I	TTAA	6 cut(s)	117, 123, 257, 734, 891, 1128
Tru9I	TTAA	6 cut(s)	117, 123, 257, 734, 891, 1128
TseFI	GTSAC	2 cut(s)	396, 565
Tsp45I	GTSAC	2 cut(s)	396, 565
TspDTI	ATGAA	5 cut(s)	14, 20, 450, 923, 1157
XapI	RAATTY	2 cut(s)	7, 194
XceI	RCATGY	2 cut(s)	316, 584
XmiI	GTMKAC	1 cut(s)	411
XspI	CTAG	2 cut(s)	309, 836

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.