Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0003952

Physical Location & Seq

Genomic Coordinates Reverse (-)

20835637 .. 20837447

Gene Structure 1811 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g19010.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

ATGGTAGATATGGAATGCAAAGATAAGTTTTTAATCCAGAGCACGATTGTTTCTTCTCGGACAACTGATGAGGATATTACCGCTAGCATGTTTTCTAAAGACGGTGGCAAGTACATTGAAGAGAAAAAGCTAAGAGTAACCCTCTTTAGTCCACCCAATTCCCCAATGCTGTCACCAATGAAGGTAGACTTGAAGCAGGGGCTCGGCTATGAACATTCAGTTCTAAAAGATCAATTTGGTGGAGTTGAAATCCTCCCTTCGCTGAACCAGGTTACTAAGGATGTGAAGTTTGCGGCTACTAATGAGATGCGAAAGCCATCAACGGATACTCATGAGAAGCCAAAACCATCAAAGGATGTAGAGTTGAAACCAGGAAAAGACTTTGAATTGAAACCAGAAAAAGATTTTGAGTTGAAACCAGAAAAAGATGTGGAGTTGAAGCCAGCAAAATATGAGGCATTGGAACCAGAAAAAGAGGCTGAGTTGAAACCAGTAAAAGATGTGGAACTAAAATCAGCAAAGGATGTGGAGTTGAAACCAGTAAAAGATGTGGAACTAAAATCAGCAAAGGATGTGGAGTTGAAACCCGAAAAAGAGGTCGAGTTGAAACCCGAAAAAGAGGTCGAGTTGAAACCCGAAAAAGAGGCGGAGTTGAAACCTGTAAATGACGTGGAACTAAAATCAGCAAAGGATGTGGAGTTGAAACCGCCAAACGTTACGGAGTTGAAACTAGAAAAAGATGTGGAGTTGAATGCAACAAAGATTGTGGAAGATTTGAAGTTAGTGAAGGATATCCAAGAGATGAAATCAAAGCTAAATGCACTTGAATTAAAGCTGAGCCAGGCTGAAGTTACTATTTCAAAGCTAACAGAGGAGAGGAGTTCAAGCATTCAAGAGACGAGAAATATACAGCAGCAATTAGCACAACTGGGTATAAGAGGTGTGGATGTGAAAGTAGTCCAAGTCGGATTTCCTCTCCTCTTTGTTTGTATGGTGGCGATCATGAGCGTTGCTATCGGATACTGTATACACCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005886 GO:0006810 GO:0008150 GO:0012505 GO:0016020 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0071944 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Motile_Sperm

Protein Analysis

346

Amino Acids

38.86

Weight (kDa)

5.31

Isoelectric Point (pI)

26.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003952)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g04180 FvH4_6g04180 FvH4_6g04180 FvH4_6g04180 FvH4_6g04180 FvH4_6g04180 FvH4_6g04180
malus_domestica	MD00G1052100.v1.1 MD12G1230200.v1.1
prunus_persica	Prupe.6G335400_v2.0.a1 Prupe.6G335400_v2.0.a1 Prupe.6G335400_v2.0.a1 Prupe.6G335400_v2.0.a1 Prupe.6G335400_v2.0.a1 Prupe.6G335400_v2.0.a1 Prupe.6G335400_v2.0.a1 Prupe.6G335400_v2.0.a1 Prupe.6G335400_v2.0.a1 Prupe.6G335500_v2.0.a1
pyrus_communis	pycom04g19010 pycom12g21400
rosa_chinensis	RchiOBHm_Chr0c30g0501241 RchiOBHm_Chr0c30g0501251 RchiOBHm_Chr3g0452761 RchiOBHm_Chr3g0452781
rosa_laevigata	RLG00000025570
rosa_multiflora	Rmu_ssc0000156.1_g000002
rosa_roxburghii	Rroxscaffold_6G00429760
rosa_rugosa	Rorug02G0643000
rosa_samantha	Rh3AG045200 Rh3BG047700 Rh3CG046200 Rh3DG046500
rosa_wichuraiana	Rw3G003560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	186, 1027
AciI	CCGC	4 cut(s)	81, 293, 647, 707
AclI	AACGTT	1 cut(s)	714
AcuI	CTGAAG	1 cut(s)	867
AfaI	GTAC	1 cut(s)	113
AjiI	CACGTC	1 cut(s)	670
AjnI	CCWGG	3 cut(s)	267, 370, 840
AjuI	GAANNNNNNNTTGG	2 cut(s)	954, 986
AluBI	AGCT	4 cut(s)	130, 814, 835, 865
AluI	AGCT	4 cut(s)	130, 814, 835, 865
Alw21I	GWGCWC	1 cut(s)	44
Alw26I	GTCTC	1 cut(s)	890
ApeKI	GCWGC	1 cut(s)	913
ArsI	GACNNNNNNTTYG	4 cut(s)	582, 606, 614, 638
AsuHPI	GGTGA	1 cut(s)	165
AsuNHI	GCTAGC	1 cut(s)	83
BanII	GRGCYC	1 cut(s)	204
Bbv12I	GWGCWC	1 cut(s)	44
BbvI	GCAGC	1 cut(s)	925
BccI	CCATC	2 cut(s)	325, 355
BciT130I	CCWGG	3 cut(s)	269, 372, 842
BciVI	GTATCC	2 cut(s)	319, 1013
BcoDI	GTCTC	1 cut(s)	890
BfaI	CTAG	2 cut(s)	84, 731
BfuI	GTATCC	2 cut(s)	319, 1013
BisI	GCNGC	2 cut(s)	294, 914
BlpI	GCTNAGC	1 cut(s)	836
BlsI	GCNGC	2 cut(s)	295, 915
Bme1390I	CCNGG	3 cut(s)	269, 372, 842
BmgBI	CACGTC	1 cut(s)	670
BmiI	GGNNCC	1 cut(s)	465
BmrFI	CCNGG	3 cut(s)	269, 372, 842
BmrI	ACTGGG	1 cut(s)	938
BmsI	GCATC	1 cut(s)	297
BmtI	GCTAGC	1 cut(s)	87
BmuI	ACTGGG	1 cut(s)	938
BplI	GAGNNNNNCTC	2 cut(s)	126, 158
Bpu1102I	GCTNAGC	1 cut(s)	836
Bse1I	ACTGG	3 cut(s)	491, 539, 933
BseBI	CCWGG	3 cut(s)	269, 372, 842
BseGI	GGATG	6 cut(s)	286, 361, 529, 577, 697, 952
BseMII	CTCAG	2 cut(s)	471, 827
BseNI	ACTGG	3 cut(s)	491, 539, 933
BseRI	GAGGAG	3 cut(s)	887, 892, 968
BseXI	GCAGC	1 cut(s)	925
BsiHKAI	GWGCWC	1 cut(s)	44
BsmAI	GTCTC	1 cut(s)	890
BsmBI	CGTCTC	1 cut(s)	890
BsmI	GAATGC	3 cut(s)	20, 757, 888
Bsp1286I	GDGCHC	2 cut(s)	44, 204
Bsp143I	GATC	2 cut(s)	229, 999
Bsp1720I	GCTNAGC	1 cut(s)	836
BspACI	CCGC	4 cut(s)	81, 293, 647, 707
BspCNI	CTCAG	2 cut(s)	472, 828
BspHI	TCATGA	2 cut(s)	331, 1002
BspLI	GGNNCC	1 cut(s)	465
BspOI	GCTAGC	1 cut(s)	87
BsrI	ACTGG	3 cut(s)	491, 539, 933
BssMI	GATC	2 cut(s)	229, 999
BssNAI	GTATAC	1 cut(s)	1028
Bst1107I	GTATAC	1 cut(s)	1028
Bst2UI	CCWGG	3 cut(s)	269, 372, 842
Bst4CI	ACNGT	2 cut(s)	104, 1025
Bst6I	CTCTTC	1 cut(s)	114
BstC8I	GCNNGC	2 cut(s)	85, 444
BstDEI	CTNAG	4 cut(s)	131, 276, 480, 836
BstF5I	GGATG	6 cut(s)	286, 361, 529, 577, 697, 952
BstKTI	GATC	2 cut(s)	232, 1002
BstMAI	GTCTC	1 cut(s)	890
BstMBI	GATC	2 cut(s)	229, 999
BstNI	CCWGG	3 cut(s)	269, 372, 842
BstNSI	RCATGY	1 cut(s)	91
BstSCI	CCNGG	3 cut(s)	267, 370, 840
BstV1I	GCAGC	1 cut(s)	925
BstZ17I	GTATAC	1 cut(s)	1028
BsuI	GTATCC	2 cut(s)	319, 1013
BtrI	CACGTC	1 cut(s)	670
BtsCI	GGATG	6 cut(s)	286, 361, 529, 577, 697, 952
Cac8I	GCNNGC	2 cut(s)	85, 444
CciI	TCATGA	2 cut(s)	331, 1002
CsiI	ACCWGGT	1 cut(s)	267
Csp6I	GTAC	1 cut(s)	112
CspCI	CAANNNNNGTGG	8 cut(s)	507, 542, 555, 590, 675, 710, 747, 782
CviAII	CATG	3 cut(s)	88, 332, 1003
CviQI	GTAC	1 cut(s)	112
DdeI	CTNAG	4 cut(s)	131, 276, 480, 836
DpnI	GATC	2 cut(s)	231, 1001
DpnII	GATC	2 cut(s)	229, 999
Eam1104I	CTCTTC	1 cut(s)	114
EarI	CTCTTC	1 cut(s)	114
EciI	GGCGGA	1 cut(s)	662
Eco24I	GRGCYC	1 cut(s)	204
Eco32I	GATATC	1 cut(s)	793
Eco57I	CTGAAG	1 cut(s)	867
EcoRII	CCWGG	3 cut(s)	267, 370, 840
EcoRV	GATATC	1 cut(s)	793
EcoT38I	GRGCYC	1 cut(s)	204
Esp3I	CGTCTC	1 cut(s)	890
FaeI	CATG	3 cut(s)	91, 335, 1006
FalI	AAGNNNNNCTT	2 cut(s)	173, 205
FatI	CATG	3 cut(s)	87, 331, 1002
FblI	GTMKAC	2 cut(s)	186, 1027
Fnu4HI	GCNGC	2 cut(s)	294, 914
FokI	GGATG	6 cut(s)	293, 368, 536, 584, 704, 959
FriOI	GRGCYC	1 cut(s)	204
Fsp4HI	GCNGC	2 cut(s)	294, 914
FspBI	CTAG	2 cut(s)	84, 731
GluI	GCNGC	2 cut(s)	294, 914
Hin1II	CATG	3 cut(s)	91, 335, 1006
HphI	GGTGA	1 cut(s)	165
Hpy166II	GTNNAC	3 cut(s)	152, 187, 1028
Hpy188I	TCNGA	3 cut(s)	60, 968, 1019
Hpy188III	TCNNGA	4 cut(s)	37, 332, 893, 1003
Hpy8I	GTNNAC	3 cut(s)	152, 187, 1028
HpyAV	CCTTC	3 cut(s)	175, 267, 781
HpyCH4III	ACNGT	2 cut(s)	104, 1025
HpyCH4IV	ACGT	2 cut(s)	669, 714
HpyCH4V	TGCA	3 cut(s)	18, 755, 821
HpyF3I	CTNAG	4 cut(s)	131, 276, 480, 836
HpySE526I	ACGT	2 cut(s)	669, 714
Hsp92II	CATG	3 cut(s)	91, 335, 1006
Kzo9I	GATC	2 cut(s)	229, 999
Lsp1109I	GCAGC	1 cut(s)	925
LweI	GCATC	1 cut(s)	297
MabI	ACCWGGT	1 cut(s)	267
MaeI	CTAG	2 cut(s)	84, 731
MaeII	ACGT	2 cut(s)	669, 714
MaeIII	GTNAC	5 cut(s)	136, 171, 271, 715, 850
MalI	GATC	2 cut(s)	231, 1001
MboI	GATC	2 cut(s)	229, 999
MboII	GAAGA	3 cut(s)	45, 131, 782
MhlI	GDGCHC	2 cut(s)	44, 204
MluCI	AATT	5 cut(s)	157, 233, 386, 827, 917
MmeI	TCCRAC	1 cut(s)	946
MseI	TTAA	2 cut(s)	32, 830
MspR9I	CCNGG	3 cut(s)	269, 372, 842
Mva1269I	GAATGC	3 cut(s)	20, 757, 888
MvaI	CCWGG	3 cut(s)	269, 372, 842
NdeII	GATC	2 cut(s)	229, 999
NheI	GCTAGC	1 cut(s)	83
NlaIII	CATG	3 cut(s)	91, 335, 1006
NlaIV	GGNNCC	1 cut(s)	465
NmeAIII	GCCGAG	1 cut(s)	183
NmuCI	GTSAC	1 cut(s)	171
NspI	RCATGY	1 cut(s)	91
PagI	TCATGA	2 cut(s)	331, 1002
PctI	GAATGC	3 cut(s)	20, 757, 888
PkrI	GCNGC	2 cut(s)	295, 915
Psp1406I	AACGTT	1 cut(s)	714
Psp6I	CCWGG	3 cut(s)	267, 370, 840
PspGI	CCWGG	3 cut(s)	267, 370, 840
PspN4I	GGNNCC	1 cut(s)	465
RsaI	GTAC	1 cut(s)	113
RsaNI	GTAC	1 cut(s)	112
SaqAI	TTAA	2 cut(s)	32, 830
SatI	GCNGC	2 cut(s)	294, 914
Sau3AI	GATC	2 cut(s)	229, 999
ScrFI	CCNGG	3 cut(s)	269, 372, 842
SduI	GDGCHC	2 cut(s)	44, 204
SexAI	ACCWGGT	1 cut(s)	267
SfaNI	GCATC	1 cut(s)	297
Sse9I	AATT	5 cut(s)	157, 233, 386, 827, 917
SsiI	CCGC	4 cut(s)	81, 293, 647, 707
SspMI	CTAG	2 cut(s)	84, 731
StyD4I	CCNGG	3 cut(s)	267, 370, 840
TaaI	ACNGT	2 cut(s)	104, 1025
TaiI	ACGT	2 cut(s)	672, 717
TaqI	TCGA	2 cut(s)	600, 624
TasI	AATT	5 cut(s)	157, 233, 386, 827, 917
TatI	WGTACW	1 cut(s)	111
TauI	GCSGC	1 cut(s)	296
Tru1I	TTAA	2 cut(s)	32, 830
Tru9I	TTAA	2 cut(s)	32, 830
TseFI	GTSAC	1 cut(s)	171
TseI	GCWGC	1 cut(s)	913
Tsp45I	GTSAC	1 cut(s)	171
TspDTI	ATGAA	3 cut(s)	194, 225, 818
TspGWI	ACGGA	2 cut(s)	338, 734
XceI	RCATGY	1 cut(s)	91
XmiI	GTMKAC	2 cut(s)	186, 1027
XspI	CTAG	2 cut(s)	84, 731

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.