Rorug02G0643000

Vesicle-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0003952
Physical Location & Seq
Reverse (-)
75449057 .. 75451031
1975 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0643000.1

Sequence Viewer

Length: 552 bp
ATGGTGAAGTACTCCAAGGAGCCTGATAATCCCACCAAGTCCTGCAAGGCCAGAGGCTCGGATCTGAGAGTTCATTTCAAGAACACGAGAGAGACCGCACAGGCCATCAGGAAGTTGCAATTGGCAAAGGCGAAGAGTTACTTGGAAGATGTTTTAGCTCACAAGCAAGCCATTCCCTTTCGCCGGTTTTGCCGTGGTGTTGGTCGAACTGCTCAGGCAAAGAACCGCCATTCAAATGGTCAAGGACGCTGGCCCGTTAAGTCTGCCAAGTTTGTTCTCGATTTGCTCAAGAATGCCGAGAGCAATGCTGAGGTGAAAGGGCTGGATGTGGATTCGCTTTATGTCTCTCACATTCAGGTCAACCAGGCTATGAAACAAAGGCGTCGCACATATCGTGCTCATGGGAGAATCAACCCTTATATGTCATCTCCTTGCCATATTGAGTTGACTTTGTCAGAGAAAGAAGAGGCAGTGAAAAAAGAGCCTGACACTCAATTGGCTCCCCGGAAATCAAGGAAAGGTCAAGCCCTACACAGCGGTGCATCTTCTTGA

Protein Analysis

183

Amino Acids

20.69

Weight (kDa)

10.24

Isoelectric Point (pI)

48.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L22 PF00237 17 - 151 1.8e-33 Ribosomal protein L22p/L17e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 96, 226, 537
AclWI GGATC 1 cut(s) 69
AcyI GRCGYC 1 cut(s) 382
AfaI GTAC 1 cut(s) 11
AfiI CCNNNNNNNGG 1 cut(s) 183
AgsI TTSAA 2 cut(s) 79, 234
AjnI CCWGG 1 cut(s) 363
AjuI GAANNNNNNNTTGG 4 cut(s) 104, 125, 136, 157
AleI CACNNNNGTG 1 cut(s) 537
AluBI AGCT 1 cut(s) 158
AluI AGCT 1 cut(s) 158
Alw21I GWGCWC 1 cut(s) 400
Alw26I GTCTC 2 cut(s) 86, 349
AlwI GGATC 1 cut(s) 69
AoxI GGCC 3 cut(s) 48, 102, 251
AspS9I GGNCC 1 cut(s) 252
AsuC2I CCSGG 1 cut(s) 505
AsuHPI GGTGA 2 cut(s) 16, 325
BauI CACGAG 1 cut(s) 85
Bbv12I GWGCWC 1 cut(s) 400
BbvCI CCTCAGC 1 cut(s) 309
BccI CCATC 1 cut(s) 113
BceAI ACGGC 1 cut(s) 177
BcgI CGANNNNNNTGC 2 cut(s) 287, 321
BciT130I CCWGG 1 cut(s) 365
BcnI CCSGG 1 cut(s) 505
BcoDI GTCTC 2 cut(s) 86, 349
BmcAI AGTACT 1 cut(s) 11
Bme1390I CCNGG 2 cut(s) 365, 505
BmgT120I GGNCC 1 cut(s) 252
BmiI GGNNCC 2 cut(s) 21, 501
BmrFI CCNGG 2 cut(s) 365, 505
Bpu10I CCTNAGC 2 cut(s) 213, 309
BpuEI CTTGAG 1 cut(s) 272
BpuMI CCSGG 1 cut(s) 505
BsaHI GRCGYC 1 cut(s) 382
BsaI GGTCTC 1 cut(s) 86
BsaJI CCNNGG 3 cut(s) 15, 193, 503
Bsc4I CCNNNNNNNGG 1 cut(s) 183
Bse118I RCCGGY 1 cut(s) 183
Bse3DI GCAATG 1 cut(s) 310
BseBI CCWGG 1 cut(s) 365
BseDI CCNNGG 3 cut(s) 15, 193, 503
BseGI GGATG 1 cut(s) 331
BseLI CCNNNNNNNGG 1 cut(s) 183
BseMI GCAATG 1 cut(s) 310
BseMII CTCAG 3 cut(s) 56, 227, 300
BshFI GGCC 3 cut(s) 50, 104, 253
BsiHKAI GWGCWC 1 cut(s) 400
BsiSI CCGG 2 cut(s) 184, 505
BslI CCNNNNNNNGG 1 cut(s) 183
BsmAI GTCTC 2 cut(s) 86, 349
BsmI GAATGC 1 cut(s) 298
BsnI GGCC 3 cut(s) 50, 104, 253
Bso31I GGTCTC 1 cut(s) 86
Bsp1286I GDGCHC 1 cut(s) 400
Bsp143I GATC 1 cut(s) 61
BspACI CCGC 3 cut(s) 96, 226, 537
BspANI GGCC 3 cut(s) 50, 104, 253
BspCNI CTCAG 3 cut(s) 57, 226, 301
BspLI GGNNCC 2 cut(s) 21, 501
BspPI GGATC 1 cut(s) 69
BspTNI GGTCTC 1 cut(s) 86
BsrDI GCAATG 1 cut(s) 310
BsrFI RCCGGY 1 cut(s) 183
BssAI RCCGGY 1 cut(s) 183
BssECI CCNNGG 3 cut(s) 15, 193, 503
BssMI GATC 1 cut(s) 61
BssNI GRCGYC 1 cut(s) 382
BssSI CACGAG 1 cut(s) 85
BssT1I CCWWGG 1 cut(s) 15
Bst2BI CACGAG 1 cut(s) 85
Bst2UI CCWGG 1 cut(s) 365
Bst6I CTCTTC 2 cut(s) 128, 459
BstACI GRCGYC 1 cut(s) 382
BstC8I GCNNGC 2 cut(s) 168, 251
BstDEI CTNAG 3 cut(s) 65, 213, 309
BstDSI CCRYGG 1 cut(s) 193
BstF5I GGATG 1 cut(s) 331
BstKTI GATC 1 cut(s) 64
BstMAI GTCTC 2 cut(s) 86, 349
BstMBI GATC 1 cut(s) 61
BstMWI GCNNNNNNNGC 1 cut(s) 189
BstNI CCWGG 1 cut(s) 365
BstSCI CCNGG 2 cut(s) 363, 503
BstX2I RGATCY 1 cut(s) 61
BstXI CCANNNNNNTGG 1 cut(s) 236
BstYI RGATCY 1 cut(s) 61
BsuRI GGCC 3 cut(s) 50, 104, 253
BtgI CCRYGG 1 cut(s) 193
BtsCI GGATG 1 cut(s) 331
BtsI GCAGTG 1 cut(s) 477
BtsIMutI CAGTG 1 cut(s) 477
Cac8I GCNNGC 2 cut(s) 168, 251
Cfr10I RCCGGY 1 cut(s) 183
Cfr13I GGNCC 1 cut(s) 252
CseI GACGC 2 cut(s) 255, 371
Csp6I GTAC 1 cut(s) 10
CviAII CATG 1 cut(s) 401
CviQI GTAC 1 cut(s) 10
DdeI CTNAG 3 cut(s) 65, 213, 309
DpnI GATC 1 cut(s) 63
DpnII GATC 1 cut(s) 61
Eam1104I CTCTTC 2 cut(s) 128, 459
EarI CTCTTC 2 cut(s) 128, 459
Eco130I CCWWGG 1 cut(s) 15
Eco31I GGTCTC 1 cut(s) 86
EcoRII CCWGG 1 cut(s) 363
EcoT14I CCWWGG 1 cut(s) 15
ErhI CCWWGG 1 cut(s) 15
FaeI CATG 1 cut(s) 404
FaiI YATR 7 cut(s) 342, 371, 391, 402, 420, 422, 438
FalI AAGNNNNNCTT 2 cut(s) 125, 157
FatI CATG 1 cut(s) 400
FokI GGATG 1 cut(s) 338
HaeIII GGCC 3 cut(s) 50, 104, 253
HapII CCGG 2 cut(s) 184, 505
HgaI GACGC 2 cut(s) 255, 371
Hin1I GRCGYC 1 cut(s) 382
Hin1II CATG 1 cut(s) 404
HincII GTYRAC 2 cut(s) 361, 447
HindII GTYRAC 2 cut(s) 361, 447
HinfI GANTC 2 cut(s) 332, 408
HpaII CCGG 2 cut(s) 184, 505
HphI GGTGA 2 cut(s) 16, 325
Hpy166II GTNNAC 2 cut(s) 361, 447
Hpy188I TCNGA 3 cut(s) 61, 66, 457
Hpy188III TCNNGA 5 cut(s) 79, 109, 278, 289, 549
Hpy8I GTNNAC 2 cut(s) 361, 447
Hpy99I CGWCG 1 cut(s) 387
HpyCH4V TGCA 3 cut(s) 45, 118, 542
HpyF10VI GCNNNNNNNGC 1 cut(s) 189
HpyF3I CTNAG 3 cut(s) 65, 213, 309
Hsp92I GRCGYC 1 cut(s) 382
Hsp92II CATG 1 cut(s) 404
Kzo9I GATC 1 cut(s) 61
LmnI GCTCC 2 cut(s) 19, 505
MaeIII GTNAC 1 cut(s) 137
MalI GATC 1 cut(s) 63
MboI GATC 1 cut(s) 61
MboII GAAGA 4 cut(s) 145, 158, 476, 537
MfeI CAATTG 2 cut(s) 119, 494
MflI RGATCY 1 cut(s) 61
MhlI GDGCHC 1 cut(s) 400
MluCI AATT 2 cut(s) 119, 494
MnlI CCTC 3 cut(s) 47, 304, 460
MseI TTAA 1 cut(s) 258
MslI CAYNNNNRTG 2 cut(s) 234, 537
MspA1I CMGCKG 1 cut(s) 537
MspI CCGG 2 cut(s) 184, 505
MspR9I CCNGG 2 cut(s) 365, 505
MunI CAATTG 2 cut(s) 119, 494
Mva1269I GAATGC 1 cut(s) 298
MvaI CCWGG 1 cut(s) 365
MwoI GCNNNNNNNGC 1 cut(s) 189
NciI CCSGG 1 cut(s) 505
NdeII GATC 1 cut(s) 61
NlaIII CATG 1 cut(s) 404
NlaIV GGNNCC 2 cut(s) 21, 501
NmeAIII GCCGAG 1 cut(s) 322
OliI CACNNNNGTG 1 cut(s) 537
PcsI WCGNNNNNNNCGW 1 cut(s) 391
PctI GAATGC 1 cut(s) 298
PfeI GAWTC 2 cut(s) 332, 408
PflFI GACNNNGTC 1 cut(s) 451
Psp6I CCWGG 1 cut(s) 363
PspGI CCWGG 1 cut(s) 363
PspN4I GGNNCC 2 cut(s) 21, 501
PspPI GGNCC 1 cut(s) 252
PsuI RGATCY 1 cut(s) 61
PsyI GACNNNGTC 1 cut(s) 451
RsaI GTAC 1 cut(s) 11
RsaNI GTAC 1 cut(s) 10
RseI CAYNNNNRTG 2 cut(s) 234, 537
SaqAI TTAA 1 cut(s) 258
Sau3AI GATC 1 cut(s) 61
Sau96I GGNCC 1 cut(s) 252
ScaI AGTACT 1 cut(s) 11
ScrFI CCNGG 2 cut(s) 365, 505
SduI GDGCHC 1 cut(s) 400
SetI ASST 4 cut(s) 160, 315, 360, 523
SmiMI CAYNNNNRTG 2 cut(s) 234, 537
SmlI CTYRAG 1 cut(s) 287
SmoI CTYRAG 1 cut(s) 287
Sse9I AATT 2 cut(s) 119, 494
SsiI CCGC 3 cut(s) 96, 226, 537
StyD4I CCNGG 2 cut(s) 363, 503
StyI CCWWGG 1 cut(s) 15
TaqI TCGA 2 cut(s) 205, 279
TasI AATT 2 cut(s) 119, 494
TatI WGTACW 1 cut(s) 9
TfiI GAWTC 2 cut(s) 332, 408
Tru1I TTAA 1 cut(s) 258
Tru9I TTAA 1 cut(s) 258
TscAI CASTG 1 cut(s) 477
TspDTI ATGAA 2 cut(s) 62, 386
TspRI CASTG 1 cut(s) 477
Tth111I GACNNNGTC 1 cut(s) 451
ZrmI AGTACT 1 cut(s) 11
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.