FvH4_6g04990
ERF Family

belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Reverse (-)
2766027 .. 2770587
4561 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g04990.t5

Sequence Viewer

Length: 1476 bp
ATGGATAATGGAGAAGCGCAGGGACCTTATTGTTTATGGGGGCCTGATAAGAACAGTGAAAAGATAGAAGTGAATGATCCTAATGAGGTTTATGTGGTCAAGATAGAAGAGGTTCAACCTAAAAGAAGAGGTTGTCTACGTCATTCTGTTTCGGCACAAGATTTGAGATATCGGGATATAGAAAAGGAGAAACTTGATGGCCAATCTCCTAGAGGAGTTTTGGAAGCTTGCCTGGAAAGCTTTGAACCTGACACTAGCGTTTCTGAAGACAACAAACAGGAACCAGAAGCTCCTTGTCCAGATTCAAAGCCACAATCTCAGTGGCGTAACTTCTTTAAGTTATGGAAGAAAAGATCAATCAAGCAGCACTTTACTTCCTTCCCTCTTGGTGTACCGAAGATGTCAATAAAAAGAAGGAGCAACAGTTCAAAAGACAATTCAGTATTGAATAATATCTACAACTTCAAGTCTCCATTAAGGAGTTTTTCCTTCTCTGCACTCCAAACCGCCACCAATAATTTCAGCAGTGAAAATATAATTGGAAAGGGTGGCTATTCCGAAGTATATAAGGGGACTTTAAAGGATGGGCAACTAGTAGCAGTAAAGCGCCTGACTAATGGAACATCCGATGAGAAAACTGCAGGCTTTCTATCTGAACTTGGAATTATAGCTCATGTAGATCATCCTAATACTGCTAAGCTAGTTGGCTGTTGCGTTGAAAAAGGAATGCACCTTGTTTTTCAATTATCATCGCTTGGGAGTTTAGGATCTCTCCTTCATGGTCCAAAGAATGATATTCTTGAATGGAGTAAAAGGTATAAAATTGCTTTAGGGGCAGCGGATGGTCTGCTGTATCTTCATGATAGTTGTCAGAGGCGAATCATCCATAGAGATATCAAGGCTGATAATATTCTACTTACAGAGGATTTTGTGCCACAGATATGTGACTTTGGGCTTGCAAAGTGGCTACCAAAACAATGGACTCATCATAACGTCTCTAAGTTTGAGGGCACATTTGGGTATTTTGCTCCTGAATATTTCATGCATGGGATTGTAGATGAAAAGACTGATGTTTATTCTTTCGGAGTCCTACTCTTGGAGCTTATAACTGGGCGTCCAGCTTTGGATCATCTTCAGCAAAGCCTTGTAATTTGGGCAAAGCCCTTGCTTAATAGAAATGACGTCAAGGAGCTCGTTGATCCTTCTATTCGTGACAATTATGACAGCACAGAGATGGATCATATGATTTTGACTGCATCTTTATGCACAGAGCCGTCTCCTATTCTACGTCCTCGCATGAGTCAGGTCGTGGTACTGCTAAGAGGTGACGAGTATGTCTCCAAGTGTGCAAGAGAAACAAAAAGGAGGTCCCTGCTGAGAACATACTCGGAAGAACTGATGGATGCACAAGAGTATAACTCAACAAAGTATCTGAGTGATCTCCACCGACACAAGCAGATTGCTTTTGAGGCTTAA

Protein Analysis

492

Amino Acids

55.79

Weight (kDa)

6.95

Isoelectric Point (pI)

57.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 42 - 248 8.6e-40 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 44 - 304 5.4e-43 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1106
AasI GACNNNNNNGTC 1 cut(s) 1334
AatII GACGTC 1 cut(s) 1185
AccI GTMKAC 1 cut(s) 136
AciI CCGC 2 cut(s) 507, 839
AclWI GGATC 5 cut(s) 71, 775, 1134, 1193, 1245
AcoI YGGCCR 1 cut(s) 199
AcuI CTGAAG 2 cut(s) 285, 1118
AcyI GRCGYC 2 cut(s) 1114, 1182
AfaI GTAC 2 cut(s) 393, 1314
AfiI CCNNNNNNNGG 1 cut(s) 1096
AgsI TTSAA 9 cut(s) 116, 245, 306, 429, 448, 466, 719, 743, 803
AhlI ACTAGT 1 cut(s) 592
AjnI CCWGG 1 cut(s) 231
AjuI GAANNNNNNNTTGG 2 cut(s) 522, 554
AloI GAACNNNNNNTCC 2 cut(s) 409, 441
AluBI AGCT 8 cut(s) 227, 240, 290, 671, 700, 1102, 1121, 1192
AluI AGCT 8 cut(s) 227, 240, 290, 671, 700, 1102, 1121, 1192
Alw21I GWGCWC 1 cut(s) 1194
Alw26I GTCTC 4 cut(s) 474, 1000, 1281, 1342
AlwI GGATC 5 cut(s) 71, 775, 1134, 1193, 1245
AoxI GGCC 2 cut(s) 41, 199
ApeKI GCWGC 2 cut(s) 364, 836
ArsI GACNNNNNNTTYG 2 cut(s) 1352, 1384
Asp700I GAANNNNTTC 1 cut(s) 111
AspLEI GCGC 2 cut(s) 19, 609
AspS9I GGNCC 4 cut(s) 23, 41, 782, 1368
AsuHPI GGTGA 1 cut(s) 1337
AvaII GGWCC 3 cut(s) 23, 782, 1368
BaeGI GKGCMC 1 cut(s) 1013
BalI TGGCCA 1 cut(s) 201
BanII GRGCYC 1 cut(s) 1194
BbsI GAAGAC 1 cut(s) 273
Bbv12I GWGCWC 1 cut(s) 1194
BbvI GCAGC 2 cut(s) 376, 848
BccI CCATC 5 cut(s) 191, 578, 836, 1228, 1393
BceAI ACGGC 1 cut(s) 1258
BciT130I CCWGG 1 cut(s) 233
BcoDI GTCTC 4 cut(s) 474, 1000, 1281, 1342
BcuI ACTAGT 1 cut(s) 592
BfaI CTAG 4 cut(s) 210, 255, 593, 701
BfmI CTRYAG 1 cut(s) 639
BfoI RGCGCY 1 cut(s) 610
BisI GCNGC 2 cut(s) 365, 837
BlpI GCTNAGC 1 cut(s) 696
BlsI GCNGC 2 cut(s) 366, 838
Bme1390I CCNGG 1 cut(s) 233
Bme18I GGWCC 3 cut(s) 23, 782, 1368
BmgT120I GGNCC 4 cut(s) 23, 41, 782, 1368
BmiI GGNNCC 4 cut(s) 24, 42, 282, 1370
BmrFI CCNGG 1 cut(s) 233
BmrI ACTGGG 1 cut(s) 1119
BmsI GCATC 2 cut(s) 1265, 1393
BmuI ACTGGG 1 cut(s) 1119
BpiI GAAGAC 1 cut(s) 273
BplI GAGNNNNNCTC 6 cut(s) 1077, 1109, 1322, 1354, 1403, 1435
Bpu1102I GCTNAGC 1 cut(s) 696
BsaHI GRCGYC 2 cut(s) 1114, 1182
BsaXI ACNNNNNCTCC 2 cut(s) 409, 439
Bsc4I CCNNNNNNNGG 1 cut(s) 1096
Bse1I ACTGG 1 cut(s) 1114
BseBI CCWGG 1 cut(s) 233
BseGI GGATG 6 cut(s) 589, 623, 682, 847, 882, 1408
BseLI CCNNNNNNNGG 1 cut(s) 1096
BseMII CTCAG 3 cut(s) 332, 1367, 1424
BseNI ACTGG 1 cut(s) 1114
BseRI GAGGAG 1 cut(s) 228
BseSI GKGCMC 1 cut(s) 1013
BseXI GCAGC 2 cut(s) 376, 848
BsgI GTGCAG 1 cut(s) 480
BshFI GGCC 2 cut(s) 43, 201
BsiHKAI GWGCWC 1 cut(s) 1194
BslFI GGGAC 3 cut(s) 36, 586, 1354
BslI CCNNNNNNNGG 1 cut(s) 1096
BsmAI GTCTC 4 cut(s) 474, 1000, 1281, 1342
BsmBI CGTCTC 2 cut(s) 1000, 1281
BsmFI GGGAC 3 cut(s) 36, 586, 1354
BsmI GAATGC 1 cut(s) 732
BsnI GGCC 2 cut(s) 43, 201
Bsp1286I GDGCHC 2 cut(s) 1013, 1194
Bsp143I GATC 8 cut(s) 76, 353, 679, 767, 1126, 1198, 1237, 1438
Bsp1720I GCTNAGC 1 cut(s) 696
BspACI CCGC 2 cut(s) 507, 839
BspANI GGCC 2 cut(s) 43, 201
BspCNI CTCAG 3 cut(s) 331, 1368, 1425
BspHI TCATGA 1 cut(s) 859
BspLI GGNNCC 4 cut(s) 24, 42, 282, 1370
BspMAI CTGCAG 1 cut(s) 643
BspPI GGATC 5 cut(s) 71, 775, 1134, 1193, 1245
BsrI ACTGG 1 cut(s) 1114
BssMI GATC 8 cut(s) 76, 353, 679, 767, 1126, 1198, 1237, 1438
BssNI GRCGYC 2 cut(s) 1114, 1182
Bst2UI CCWGG 1 cut(s) 233
Bst4CI ACNGT 2 cut(s) 56, 425
Bst6I CTCTTC 2 cut(s) 102, 121
BstACI GRCGYC 2 cut(s) 1114, 1182
BstC8I GCNNGC 3 cut(s) 229, 643, 957
BstDEI CTNAG 6 cut(s) 318, 696, 999, 1319, 1376, 1433
BstF5I GGATG 6 cut(s) 589, 623, 682, 847, 882, 1408
BstH2I RGCGCY 1 cut(s) 610
BstHHI GCGC 2 cut(s) 19, 609
BstKTI GATC 8 cut(s) 79, 356, 682, 770, 1129, 1201, 1240, 1441
BstMAI GTCTC 4 cut(s) 474, 1000, 1281, 1342
BstMBI GATC 8 cut(s) 76, 353, 679, 767, 1126, 1198, 1237, 1438
BstMWI GCNNNNNNNGC 3 cut(s) 237, 833, 1469
BstNI CCWGG 1 cut(s) 233
BstSCI CCNGG 1 cut(s) 231
BstSFI CTRYAG 1 cut(s) 639
BstSLI GKGCMC 1 cut(s) 1013
BstV1I GCAGC 2 cut(s) 376, 848
BstV2I GAAGAC 1 cut(s) 273
BstX2I RGATCY 1 cut(s) 767
BstXI CCANNNNNNTGG 1 cut(s) 978
BstYI RGATCY 1 cut(s) 767
BsuRI GGCC 2 cut(s) 43, 201
BtgZI GCGATG 1 cut(s) 735
BtsCI GGATG 6 cut(s) 589, 623, 682, 847, 882, 1408
BtsI GCAGTG 1 cut(s) 532
BtsIMutI CAGTG 3 cut(s) 61, 326, 532
Cac8I GCNNGC 3 cut(s) 229, 643, 957
CciI TCATGA 1 cut(s) 859
CfoI GCGC 2 cut(s) 19, 609
Cfr13I GGNCC 4 cut(s) 23, 41, 782, 1368
CseI GACGC 1 cut(s) 1103
Csp6I GTAC 2 cut(s) 392, 1313
CspCI CAANNNNNGTGG 2 cut(s) 302, 337
CviAII CATG 6 cut(s) 674, 779, 860, 1042, 1046, 1297
CviQI GTAC 2 cut(s) 392, 1313
DdeI CTNAG 6 cut(s) 318, 696, 999, 1319, 1376, 1433
DpnI GATC 8 cut(s) 78, 355, 681, 769, 1128, 1200, 1239, 1440
DpnII GATC 8 cut(s) 76, 353, 679, 767, 1126, 1198, 1237, 1438
DraI TTTAAA 1 cut(s) 579
DrdI GACNNNNNNGTC 1 cut(s) 1334
DseDI GACNNNNNNGTC 1 cut(s) 1334
EaeI YGGCCR 1 cut(s) 199
Eam1104I CTCTTC 2 cut(s) 102, 121
EarI CTCTTC 2 cut(s) 102, 121
Ecl136II GAGCTC 1 cut(s) 1192
Eco24I GRGCYC 1 cut(s) 1194
Eco32I GATATC 2 cut(s) 170, 895
Eco47I GGWCC 3 cut(s) 23, 782, 1368
Eco53kI GAGCTC 1 cut(s) 1192
Eco57I CTGAAG 2 cut(s) 285, 1118
EcoICRI GAGCTC 1 cut(s) 1192
EcoO109I RGGNCCY 3 cut(s) 23, 41, 1368
EcoRII CCWGG 1 cut(s) 231
EcoRV GATATC 2 cut(s) 170, 895
EcoT22I ATGCAT 1 cut(s) 1047
EcoT38I GRGCYC 1 cut(s) 1194
Esp3I CGTCTC 2 cut(s) 1000, 1281
FaeI CATG 6 cut(s) 677, 782, 863, 1045, 1049, 1300
FalI AAGNNNNNCTT 2 cut(s) 353, 385
FaqI GGGAC 3 cut(s) 36, 586, 1354
FatI CATG 6 cut(s) 673, 778, 859, 1041, 1045, 1296
FauNDI CATATG 1 cut(s) 1242
FblI GTMKAC 1 cut(s) 136
Fnu4HI GCNGC 2 cut(s) 365, 837
FokI GGATG 6 cut(s) 596, 610, 669, 854, 869, 1415
FriOI GRGCYC 1 cut(s) 1194
Fsp4HI GCNGC 2 cut(s) 365, 837
FspBI CTAG 4 cut(s) 210, 255, 593, 701
GlaI GCGC 2 cut(s) 18, 608
GluI GCNGC 2 cut(s) 365, 837
HaeII RGCGCY 1 cut(s) 610
HaeIII GGCC 2 cut(s) 43, 201
HgaI GACGC 1 cut(s) 1103
HhaI GCGC 2 cut(s) 19, 609
Hin1I GRCGYC 2 cut(s) 1114, 1182
Hin1II CATG 6 cut(s) 677, 782, 863, 1045, 1049, 1300
Hin6I GCGC 2 cut(s) 17, 607
HinP1I GCGC 2 cut(s) 17, 607
HindIII AAGCTT 2 cut(s) 225, 238
HinfI GANTC 5 cut(s) 302, 879, 982, 1086, 1300
HphI GGTGA 1 cut(s) 1337
Hpy166II GTNNAC 2 cut(s) 137, 392
Hpy188I TCNGA 8 cut(s) 265, 559, 628, 655, 873, 1085, 1390, 1434
Hpy188III TCNNGA 7 cut(s) 100, 173, 299, 800, 860, 1031, 1211
Hpy8I GTNNAC 2 cut(s) 137, 392
HpyAV CCTTC 5 cut(s) 388, 408, 499, 785, 1212
HpyCH4III ACNGT 2 cut(s) 56, 425
HpyCH4IV ACGT 4 cut(s) 139, 993, 1182, 1288
HpyCH4V TGCA 9 cut(s) 497, 641, 730, 959, 1045, 1256, 1266, 1349, 1406
HpyF10VI GCNNNNNNNGC 3 cut(s) 237, 833, 1469
HpyF3I CTNAG 6 cut(s) 318, 696, 999, 1319, 1376, 1433
HpySE526I ACGT 4 cut(s) 139, 993, 1182, 1288
Hsp92I GRCGYC 2 cut(s) 1114, 1182
Hsp92II CATG 6 cut(s) 677, 782, 863, 1045, 1049, 1300
HspAI GCGC 2 cut(s) 17, 607
Kzo9I GATC 8 cut(s) 76, 353, 679, 767, 1126, 1198, 1237, 1438
LmnI GCTCC 5 cut(s) 295, 417, 1033, 1099, 1189
Lsp1109I GCAGC 2 cut(s) 376, 848
LweI GCATC 2 cut(s) 1265, 1393
MaeI CTAG 4 cut(s) 210, 255, 593, 701
MaeII ACGT 4 cut(s) 139, 993, 1182, 1288
MaeIII GTNAC 4 cut(s) 326, 944, 1211, 1325
MalI GATC 8 cut(s) 78, 355, 681, 769, 1128, 1200, 1239, 1440
MboI GATC 8 cut(s) 76, 353, 679, 767, 1126, 1198, 1237, 1438
MboII GAAGA 8 cut(s) 119, 138, 278, 358, 409, 848, 1124, 1403
MflI RGATCY 1 cut(s) 767
MhlI GDGCHC 2 cut(s) 1013, 1194
MlsI TGGCCA 1 cut(s) 201
MluCI AATT 8 cut(s) 436, 517, 537, 663, 743, 822, 1149, 1216
MluNI TGGCCA 1 cut(s) 201
MlyI GAGTC 3 cut(s) 976, 1095, 1309
Mox20I TGGCCA 1 cut(s) 201
Mph1103I ATGCAT 1 cut(s) 1047
MroXI GAANNNNTTC 1 cut(s) 111
MscI TGGCCA 1 cut(s) 201
MseI TTAA 5 cut(s) 336, 476, 578, 1170, 1474
MslI CAYNNNNRTG 3 cut(s) 940, 1232, 1261
Msp20I TGGCCA 1 cut(s) 201
MspA1I CMGCKG 1 cut(s) 839
MspR9I CCNGG 1 cut(s) 233
Mva1269I GAATGC 1 cut(s) 732
MvaI CCWGG 1 cut(s) 233
MwoI GCNNNNNNNGC 3 cut(s) 237, 833, 1469
NdeI CATATG 1 cut(s) 1242
NdeII GATC 8 cut(s) 76, 353, 679, 767, 1126, 1198, 1237, 1438
NlaIII CATG 6 cut(s) 677, 782, 863, 1045, 1049, 1300
NlaIV GGNNCC 4 cut(s) 24, 42, 282, 1370
NmuCI GTSAC 3 cut(s) 944, 1211, 1325
NsiI ATGCAT 1 cut(s) 1047
PagI TCATGA 1 cut(s) 859
PctI GAATGC 1 cut(s) 732
PdmI GAANNNNTTC 1 cut(s) 111
PfeI GAWTC 2 cut(s) 302, 879
PkrI GCNGC 2 cut(s) 366, 838
PleI GAGTC 3 cut(s) 976, 1094, 1308
PpsI GAGTC 3 cut(s) 976, 1094, 1308
PpuMI RGGWCCY 2 cut(s) 23, 1368
PsiI TTATAA 1 cut(s) 1106
Psp124BI GAGCTC 1 cut(s) 1194
Psp5II RGGWCCY 2 cut(s) 23, 1368
Psp6I CCWGG 1 cut(s) 231
PspGI CCWGG 1 cut(s) 231
PspN4I GGNNCC 4 cut(s) 24, 42, 282, 1370
PspPI GGNCC 4 cut(s) 23, 41, 782, 1368
PspPPI RGGWCCY 2 cut(s) 23, 1368
PstI CTGCAG 1 cut(s) 643
PsuI RGATCY 1 cut(s) 767
RsaI GTAC 2 cut(s) 393, 1314
RsaNI GTAC 2 cut(s) 392, 1313
RseI CAYNNNNRTG 3 cut(s) 940, 1232, 1261
SacI GAGCTC 1 cut(s) 1194
SaqAI TTAA 5 cut(s) 336, 476, 578, 1170, 1474
SatI GCNGC 2 cut(s) 365, 837
Sau3AI GATC 8 cut(s) 76, 353, 679, 767, 1126, 1198, 1237, 1438
Sau96I GGNCC 4 cut(s) 23, 41, 782, 1368
SchI GAGTC 3 cut(s) 976, 1095, 1309
ScrFI CCNGG 1 cut(s) 233
SduI GDGCHC 2 cut(s) 1013, 1194
SfaNI GCATC 2 cut(s) 1265, 1393
SfcI CTRYAG 1 cut(s) 639
SinI GGWCC 3 cut(s) 23, 782, 1368
SmiMI CAYNNNNRTG 3 cut(s) 940, 1232, 1261
SpeI ACTAGT 1 cut(s) 592
Sse9I AATT 8 cut(s) 436, 517, 537, 663, 743, 822, 1149, 1216
SsiI CCGC 2 cut(s) 507, 839
SspI AATATT 2 cut(s) 910, 1037
SspMI CTAG 4 cut(s) 210, 255, 593, 701
SstI GAGCTC 1 cut(s) 1194
StyD4I CCNGG 1 cut(s) 231
TaaI ACNGT 2 cut(s) 56, 425
TaiI ACGT 4 cut(s) 142, 996, 1185, 1291
TasI AATT 8 cut(s) 436, 517, 537, 663, 743, 822, 1149, 1216
TfiI GAWTC 2 cut(s) 302, 879
Tru1I TTAA 5 cut(s) 336, 476, 578, 1170, 1474
Tru9I TTAA 5 cut(s) 336, 476, 578, 1170, 1474
TscAI CASTG 3 cut(s) 61, 326, 532
TseFI GTSAC 3 cut(s) 944, 1211, 1325
TseI GCWGC 2 cut(s) 364, 836
Tsp45I GTSAC 3 cut(s) 944, 1211, 1325
TspDTI ATGAA 4 cut(s) 767, 848, 1030, 1074
TspRI CASTG 3 cut(s) 61, 326, 532
VpaK11BI GGWCC 3 cut(s) 23, 782, 1368
XcmI CCANNNNNNNNNTGG 1 cut(s) 318
XmiI GTMKAC 1 cut(s) 136
XmnI GAANNNNTTC 1 cut(s) 111
XspI CTAG 4 cut(s) 210, 255, 593, 701
ZraI GACGTC 1 cut(s) 1183
Zsp2I ATGCAT 1 cut(s) 1047
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.