Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000510.1

Orthogroup ID

OG0007101

Physical Location & Seq

Genomic Coordinates Reverse (-)

63816 .. 67540

Gene Structure 3725 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000510.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1491 bp

atggcaaatggagaagtgcagggaccttattgtccatggtatgccagttttcttcttcatgttctctcatttggggggcctggtaagaaccttgaaagaatagaagtgaatgatcctaatgaggtttctgtggtaatacctcaaagaagaggtggtctacgccattctgtttcggcccaagatttgagatatagggatatagaaaaggagaaacatgatggccaatctcctagaggagttttggaagcttgtgtggaaagctttgaatctgaaactagcgtttctgaaaacagcaaaccagaagcagaagcttcttgtccagattcaaagcctcaatctcactggtgtagattttttaagctgtggagtaaaagatcaatcaagcagcacttcttccctcttggtgtatccaagatgtcaataaaaagaaggagcaacagtgcaaaagacaattcagtactgactaatatctacaacttcaagtctccattaaagagtttctccttctctgcactccaaaccgccaccaataatttcaacaatgaaaatataattggaaagggtggctattccgaagtatatagggggactttaaaggatgggcaactagtagcagtaaagcggctgactaatggaacatccgatgagaaaactgcaggctttctatctgaacttggcattatagctcatgtagatcatcctaatactgctaagctaattggctgttgcgttgaaaaaggaatgcaccttgtttttcaattatctccacttgggagtttaggatctctcctgcatggtccaaagaattatattcttgattggagtaaaaggtataaaattgcgttaggggcagcagatggtctgctgtatcttcatgatagttgtcagaggcgaatcatccatagagatatcaaggctgataatattctacttacagaggattttgtgcctcagatatgtgactttgggcttgcaaagtggctaccaaaacaatggactcatcacaacgtctctaagtttgagggcacatttgggtattttgctcctgaatatttcatgcatgggattgtagatgaaaagactgatgtttattcttttggagtcctactcttggagcttataactgggcgtccagctttggataatcttcagcaaagccttgtaatttgggcaaagcccttgcttaataaaaatgacgtcaaggagcttgttgatccttctattggtgacaactatgacagcacagagatggatcatatgattttgactgcatctttgtgcatagagcagtcttctattctacgtcctcgcatgagtcaggttgtggtactgctaagaggtgacgagtatgtctccaagtgtgcaaaagaaacgaaaaggaggtccctgctgagaacatactcggaagaactgatggatgcacaagaatataactcaacaaagtatctgagggatctccgccgacacaagcagattgcttttgacatttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051020 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

496

Amino Acids

56.09

Weight (kDa)

8.2

Isoelectric Point (pI)

53.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007101)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05140 AT3G05140
fragaria_vesca	FvH4_6g04990 FvH4_6g04990 FvH4_6g04990 FvH4_6g04990 FvH4_6g04990 FvH4_6g04990
malus_domestica	MD04G1211700.v1.1 MD12G1226600.v1.1
prunus_persica	Prupe.6G332300_v2.0.a1 Prupe.6G332300_v2.0.a1 Prupe.6G332300_v2.0.a1
pyrus_communis	pycom04g18770 pycom12g21110
rosa_chinensis	RchiOBHm_Chr3g0453501
rosa_laevigata	RLG00000025508
rosa_multiflora	Rmu_sc0000510.1_g000014
rosa_roxburghii	Rroxscaffold_6G00430470
rosa_rugosa	Rorug02G0649600 Rorug02G0649600
rosa_samantha	Rh3AG052500 Rh3BG053900 Rh3CG053300 Rh3DG054100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1121
AasI	GACNNNNNNGTC	2 cut(s)	30, 1349
AatII	GACGTC	1 cut(s)	1200
AccI	GTMKAC	1 cut(s)	157
AciI	CCGC	3 cut(s)	522, 622, 1459
AclWI	GGATC	5 cut(s)	107, 790, 1208, 1260, 1461
AcoI	YGGCCR	1 cut(s)	220
AcuI	CTGAAG	1 cut(s)	1133
AcyI	GRCGYC	2 cut(s)	1129, 1197
AfaI	GTAC	2 cut(s)	459, 1329
AfiI	CCNNNNNNNGG	2 cut(s)	1111, 1223
AgsI	TTSAA	7 cut(s)	95, 266, 327, 481, 538, 734, 758
AhlI	ACTAGT	1 cut(s)	607
AjnI	CCWGG	1 cut(s)	79
AjuI	GAANNNNNNNTTGG	2 cut(s)	537, 569
AluBI	AGCT	9 cut(s)	248, 261, 311, 361, 686, 715, 1117, 1136, 1207
AluI	AGCT	9 cut(s)	248, 261, 311, 361, 686, 715, 1117, 1136, 1207
Alw26I	GTCTC	3 cut(s)	489, 1015, 1357
AlwI	GGATC	5 cut(s)	107, 790, 1208, 1260, 1461
AoxI	GGCC	3 cut(s)	77, 174, 220
ApeKI	GCWGC	2 cut(s)	385, 851
ArsI	GACNNNNNNTTYG	4 cut(s)	1258, 1290, 1367, 1399
AspS9I	GGNCC	5 cut(s)	23, 77, 175, 797, 1383
AsuHPI	GGTGA	2 cut(s)	1238, 1352
AvaII	GGWCC	3 cut(s)	23, 797, 1383
BaeGI	GKGCMC	1 cut(s)	1028
BalI	TGGCCA	1 cut(s)	222
BbsI	GAAGAC	1 cut(s)	1284
BbvI	GCAGC	2 cut(s)	397, 863
BccI	CCATC	5 cut(s)	212, 593, 851, 1243, 1408
BciT130I	CCWGG	1 cut(s)	81
BciVI	GTATCC	1 cut(s)	418
BcoDI	GTCTC	3 cut(s)	489, 1015, 1357
BcuI	ACTAGT	1 cut(s)	607
BfaI	CTAG	3 cut(s)	231, 276, 608
BfmI	CTRYAG	1 cut(s)	654
BfuI	GTATCC	1 cut(s)	418
BisI	GCNGC	3 cut(s)	386, 623, 852
BlpI	GCTNAGC	1 cut(s)	711
BlsI	GCNGC	3 cut(s)	387, 624, 853
BmcAI	AGTACT	1 cut(s)	459
Bme1390I	CCNGG	1 cut(s)	81
Bme18I	GGWCC	3 cut(s)	23, 797, 1383
BmgT120I	GGNCC	5 cut(s)	23, 77, 175, 797, 1383
BmiI	GGNNCC	3 cut(s)	24, 78, 1385
BmrFI	CCNGG	1 cut(s)	81
BmrI	ACTGGG	1 cut(s)	1134
BmsI	GCATC	2 cut(s)	1280, 1408
BmuI	ACTGGG	1 cut(s)	1134
BpiI	GAAGAC	1 cut(s)	1284
BplI	GAGNNNNNCTC	4 cut(s)	1092, 1124, 1337, 1369
Bpu1102I	GCTNAGC	1 cut(s)	711
BsaHI	GRCGYC	2 cut(s)	1129, 1197
BsaJI	CCNNGG	1 cut(s)	35
BsaXI	ACNNNNNCTCC	2 cut(s)	424, 454
Bsc4I	CCNNNNNNNGG	2 cut(s)	1111, 1223
Bse1I	ACTGG	3 cut(s)	45, 347, 1129
BseBI	CCWGG	1 cut(s)	81
BseDI	CCNNGG	1 cut(s)	35
BseGI	GGATG	5 cut(s)	604, 638, 697, 897, 1423
BseLI	CCNNNNNNNGG	2 cut(s)	1111, 1223
BseMII	CTCAG	3 cut(s)	965, 1382, 1439
BseNI	ACTGG	3 cut(s)	45, 347, 1129
BseRI	GAGGAG	1 cut(s)	249
BseSI	GKGCMC	1 cut(s)	1028
BseXI	GCAGC	2 cut(s)	397, 863
BsgI	GTGCAG	2 cut(s)	38, 495
BshFI	GGCC	3 cut(s)	79, 176, 222
BslFI	GGGAC	3 cut(s)	36, 601, 1369
BslI	CCNNNNNNNGG	2 cut(s)	1111, 1223
BsmAI	GTCTC	3 cut(s)	489, 1015, 1357
BsmBI	CGTCTC	1 cut(s)	1015
BsmFI	GGGAC	3 cut(s)	36, 601, 1369
BsmI	GAATGC	1 cut(s)	747
BsnI	GGCC	3 cut(s)	79, 176, 222
Bsp1286I	GDGCHC	1 cut(s)	1028
Bsp143I	GATC	7 cut(s)	112, 374, 694, 782, 1213, 1252, 1453
Bsp1720I	GCTNAGC	1 cut(s)	711
Bsp19I	CCATGG	1 cut(s)	35
BspACI	CCGC	3 cut(s)	522, 622, 1459
BspANI	GGCC	3 cut(s)	79, 176, 222
BspCNI	CTCAG	3 cut(s)	964, 1383, 1440
BspHI	TCATGA	1 cut(s)	874
BspLI	GGNNCC	3 cut(s)	24, 78, 1385
BspMAI	CTGCAG	1 cut(s)	658
BspPI	GGATC	5 cut(s)	107, 790, 1208, 1260, 1461
BsrI	ACTGG	3 cut(s)	45, 347, 1129
BssECI	CCNNGG	1 cut(s)	35
BssMI	GATC	7 cut(s)	112, 374, 694, 782, 1213, 1252, 1453
BssNI	GRCGYC	2 cut(s)	1129, 1197
BssT1I	CCWWGG	1 cut(s)	35
Bst2UI	CCWGG	1 cut(s)	81
Bst4CI	ACNGT	1 cut(s)	440
Bst6I	CTCTTC	1 cut(s)	142
BstACI	GRCGYC	2 cut(s)	1129, 1197
BstC8I	GCNNGC	2 cut(s)	658, 972
BstDEI	CTNAG	6 cut(s)	711, 951, 1014, 1334, 1391, 1448
BstDSI	CCRYGG	1 cut(s)	35
BstF5I	GGATG	5 cut(s)	604, 638, 697, 897, 1423
BstKTI	GATC	7 cut(s)	115, 377, 697, 785, 1216, 1255, 1456
BstMAI	GTCTC	3 cut(s)	489, 1015, 1357
BstMBI	GATC	7 cut(s)	112, 374, 694, 782, 1213, 1252, 1453
BstMWI	GCNNNNNNNGC	1 cut(s)	848
BstNI	CCWGG	1 cut(s)	81
BstSCI	CCNGG	1 cut(s)	79
BstSFI	CTRYAG	1 cut(s)	654
BstSLI	GKGCMC	1 cut(s)	1028
BstV1I	GCAGC	2 cut(s)	397, 863
BstV2I	GAAGAC	1 cut(s)	1284
BstX2I	RGATCY	2 cut(s)	782, 1453
BstXI	CCANNNNNNTGG	1 cut(s)	993
BstYI	RGATCY	2 cut(s)	782, 1453
BsuI	GTATCC	1 cut(s)	418
BsuRI	GGCC	3 cut(s)	79, 176, 222
BtgI	CCRYGG	1 cut(s)	35
BtsCI	GGATG	5 cut(s)	604, 638, 697, 897, 1423
BtsIMutI	CAGTG	2 cut(s)	340, 445
Cac8I	GCNNGC	2 cut(s)	658, 972
CciI	TCATGA	1 cut(s)	874
Cfr13I	GGNCC	5 cut(s)	23, 77, 175, 797, 1383
CseI	GACGC	1 cut(s)	1118
Csp6I	GTAC	2 cut(s)	458, 1328
CviAII	CATG	9 cut(s)	36, 59, 215, 689, 794, 875, 1057, 1061, 1312
CviQI	GTAC	2 cut(s)	458, 1328
DdeI	CTNAG	6 cut(s)	711, 951, 1014, 1334, 1391, 1448
DpnI	GATC	7 cut(s)	114, 376, 696, 784, 1215, 1254, 1455
DpnII	GATC	7 cut(s)	112, 374, 694, 782, 1213, 1252, 1453
DraI	TTTAAA	1 cut(s)	594
DrdI	GACNNNNNNGTC	2 cut(s)	30, 1349
DseDI	GACNNNNNNGTC	2 cut(s)	30, 1349
EaeI	YGGCCR	1 cut(s)	220
Eam1104I	CTCTTC	1 cut(s)	142
EarI	CTCTTC	1 cut(s)	142
EciI	GGCGGA	1 cut(s)	1448
Eco130I	CCWWGG	1 cut(s)	35
Eco32I	GATATC	1 cut(s)	910
Eco47I	GGWCC	3 cut(s)	23, 797, 1383
Eco57I	CTGAAG	1 cut(s)	1133
EcoO109I	RGGNCCY	3 cut(s)	23, 77, 1383
EcoRII	CCWGG	1 cut(s)	79
EcoRV	GATATC	1 cut(s)	910
EcoT14I	CCWWGG	1 cut(s)	35
EcoT22I	ATGCAT	1 cut(s)	1062
ErhI	CCWWGG	1 cut(s)	35
Esp3I	CGTCTC	1 cut(s)	1015
FaeI	CATG	9 cut(s)	39, 62, 218, 692, 797, 878, 1060, 1064, 1315
FalI	AAGNNNNNCTT	2 cut(s)	374, 406
FaqI	GGGAC	3 cut(s)	36, 601, 1369
FatI	CATG	9 cut(s)	35, 58, 214, 688, 793, 874, 1056, 1060, 1311
FauNDI	CATATG	1 cut(s)	1257
FblI	GTMKAC	1 cut(s)	157
Fnu4HI	GCNGC	3 cut(s)	386, 623, 852
FokI	GGATG	5 cut(s)	611, 625, 684, 884, 1430
Fsp4HI	GCNGC	3 cut(s)	386, 623, 852
FspBI	CTAG	3 cut(s)	231, 276, 608
GluI	GCNGC	3 cut(s)	386, 623, 852
HaeIII	GGCC	3 cut(s)	79, 176, 222
HgaI	GACGC	1 cut(s)	1118
Hin1I	GRCGYC	2 cut(s)	1129, 1197
Hin1II	CATG	9 cut(s)	39, 62, 218, 692, 797, 878, 1060, 1064, 1315
HindIII	AAGCTT	3 cut(s)	246, 259, 309
HinfI	GANTC	6 cut(s)	266, 323, 894, 997, 1101, 1315
HphI	GGTGA	2 cut(s)	1238, 1352
Hpy166II	GTNNAC	1 cut(s)	158
Hpy188I	TCNGA	9 cut(s)	271, 286, 574, 643, 670, 888, 954, 1405, 1449
Hpy188III	TCNNGA	4 cut(s)	320, 815, 875, 1046
Hpy8I	GTNNAC	1 cut(s)	158
HpyAV	CCTTC	3 cut(s)	423, 514, 1227
HpyCH4III	ACNGT	1 cut(s)	440
HpyCH4IV	ACGT	3 cut(s)	1008, 1197, 1303
HpyF10VI	GCNNNNNNNGC	1 cut(s)	848
HpyF3I	CTNAG	6 cut(s)	711, 951, 1014, 1334, 1391, 1448
HpySE526I	ACGT	3 cut(s)	1008, 1197, 1303
Hsp92I	GRCGYC	2 cut(s)	1129, 1197
Hsp92II	CATG	9 cut(s)	39, 62, 218, 692, 797, 878, 1060, 1064, 1315
Kzo9I	GATC	7 cut(s)	112, 374, 694, 782, 1213, 1252, 1453
LmnI	GCTCC	4 cut(s)	432, 1048, 1114, 1204
Lsp1109I	GCAGC	2 cut(s)	397, 863
LweI	GCATC	2 cut(s)	1280, 1408
MaeI	CTAG	3 cut(s)	231, 276, 608
MaeII	ACGT	3 cut(s)	1008, 1197, 1303
MaeIII	GTNAC	3 cut(s)	959, 1226, 1340
MalI	GATC	7 cut(s)	114, 376, 696, 784, 1215, 1254, 1455
MboI	GATC	7 cut(s)	112, 374, 694, 782, 1213, 1252, 1453
MboII	GAAGA	8 cut(s)	44, 47, 159, 385, 863, 1139, 1284, 1418
MflI	RGATCY	2 cut(s)	782, 1453
MhlI	GDGCHC	1 cut(s)	1028
MlsI	TGGCCA	1 cut(s)	222
MluCI	AATT	8 cut(s)	451, 532, 552, 717, 758, 805, 837, 1164
MluNI	TGGCCA	1 cut(s)	222
MlyI	GAGTC	3 cut(s)	991, 1110, 1324
Mox20I	TGGCCA	1 cut(s)	222
Mph1103I	ATGCAT	1 cut(s)	1062
MscI	TGGCCA	1 cut(s)	222
MseI	TTAA	4 cut(s)	357, 491, 593, 1185
MslI	CAYNNNNRTG	2 cut(s)	1247, 1276
Msp20I	TGGCCA	1 cut(s)	222
MspR9I	CCNGG	1 cut(s)	81
Mva1269I	GAATGC	1 cut(s)	747
MvaI	CCWGG	1 cut(s)	81
MwoI	GCNNNNNNNGC	1 cut(s)	848
NcoI	CCATGG	1 cut(s)	35
NdeI	CATATG	1 cut(s)	1257
NdeII	GATC	7 cut(s)	112, 374, 694, 782, 1213, 1252, 1453
NlaIII	CATG	9 cut(s)	39, 62, 218, 692, 797, 878, 1060, 1064, 1315
NlaIV	GGNNCC	3 cut(s)	24, 78, 1385
NmuCI	GTSAC	3 cut(s)	959, 1226, 1340
NsiI	ATGCAT	1 cut(s)	1062
PagI	TCATGA	1 cut(s)	874
PctI	GAATGC	1 cut(s)	747
PfeI	GAWTC	3 cut(s)	266, 323, 894
PkrI	GCNGC	3 cut(s)	387, 624, 853
PleI	GAGTC	3 cut(s)	991, 1109, 1323
PpsI	GAGTC	3 cut(s)	991, 1109, 1323
PpuMI	RGGWCCY	2 cut(s)	23, 1383
PsiI	TTATAA	1 cut(s)	1121
Psp5II	RGGWCCY	2 cut(s)	23, 1383
Psp6I	CCWGG	1 cut(s)	79
PspGI	CCWGG	1 cut(s)	79
PspN4I	GGNNCC	3 cut(s)	24, 78, 1385
PspPI	GGNCC	5 cut(s)	23, 77, 175, 797, 1383
PspPPI	RGGWCCY	2 cut(s)	23, 1383
PstI	CTGCAG	1 cut(s)	658
PsuI	RGATCY	2 cut(s)	782, 1453
RsaI	GTAC	2 cut(s)	459, 1329
RsaNI	GTAC	2 cut(s)	458, 1328
RseI	CAYNNNNRTG	2 cut(s)	1247, 1276
SaqAI	TTAA	4 cut(s)	357, 491, 593, 1185
SatI	GCNGC	3 cut(s)	386, 623, 852
Sau3AI	GATC	7 cut(s)	112, 374, 694, 782, 1213, 1252, 1453
Sau96I	GGNCC	5 cut(s)	23, 77, 175, 797, 1383
ScaI	AGTACT	1 cut(s)	459
SchI	GAGTC	3 cut(s)	991, 1110, 1324
ScrFI	CCNGG	1 cut(s)	81
SduI	GDGCHC	1 cut(s)	1028
SfaNI	GCATC	2 cut(s)	1280, 1408
SfcI	CTRYAG	1 cut(s)	654
SinI	GGWCC	3 cut(s)	23, 797, 1383
SmiMI	CAYNNNNRTG	2 cut(s)	1247, 1276
SpeI	ACTAGT	1 cut(s)	607
Sse9I	AATT	8 cut(s)	451, 532, 552, 717, 758, 805, 837, 1164
SsiI	CCGC	3 cut(s)	522, 622, 1459
SspI	AATATT	2 cut(s)	925, 1052
SspMI	CTAG	3 cut(s)	231, 276, 608
StyD4I	CCNGG	1 cut(s)	79
StyI	CCWWGG	1 cut(s)	35
TaaI	ACNGT	1 cut(s)	440
TaiI	ACGT	3 cut(s)	1011, 1200, 1306
TasI	AATT	8 cut(s)	451, 532, 552, 717, 758, 805, 837, 1164
TatI	WGTACW	1 cut(s)	457
TauI	GCSGC	1 cut(s)	625
TfiI	GAWTC	3 cut(s)	266, 323, 894
Tru1I	TTAA	4 cut(s)	357, 491, 593, 1185
Tru9I	TTAA	4 cut(s)	357, 491, 593, 1185
TscAI	CASTG	2 cut(s)	347, 445
TseFI	GTSAC	3 cut(s)	959, 1226, 1340
TseI	GCWGC	2 cut(s)	385, 851
Tsp45I	GTSAC	3 cut(s)	959, 1226, 1340
TspDTI	ATGAA	5 cut(s)	47, 558, 863, 1045, 1089
TspRI	CASTG	2 cut(s)	347, 445
VpaK11BI	GGWCC	3 cut(s)	23, 797, 1383
XmiI	GTMKAC	1 cut(s)	157
XspI	CTAG	3 cut(s)	231, 276, 608
ZraI	GACGTC	1 cut(s)	1198
ZrmI	AGTACT	1 cut(s)	459
Zsp2I	ATGCAT	1 cut(s)	1062

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.