MD12G1226600.v1.1
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
Physical Location & Seq
Forward (+)
30235188 .. 30239082
3895 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1226600.v1.1.491

Sequence Viewer

Length: 1476 bp
ATGGCGAATGGTGAAGTGCAAGGACCTTATTGTTCATGGGGAGCTGGAAAGGAAACCGAAAACTTGTCACTGAAGGTCCCAAATGAGATTTCTAAGGTGAAACAGAGAAAACAGAAAGTTCTACTTACTTCTGCTTCTGCCCAAGATTTGAGGTATAACGACATAGAAAAAGAGAAGGAGGATGTCCAAACTCCTAGAGGAGTTTTAGAAGCTTGCGTGAGAGGCTTTGAATCCGAGACTAGTACTTCCGAAAACAGCACGACTGAAAATGGCACGAGTGAGTCATCAGTGCGTTGTTCAAGTTCGAATTCACTTTCTCACTGGCGCAAGTTCTTTAAACAATGGAGTAAAAGATCGCTTAAGCGCTTAGCCTCCTTCCCTCCGCTTGGTGTGCCGAAGATATCATCACGAAGAAGAATCAGGAGTGCAAGAGAGGATCCAGCATTAACTAATATATACAACTTCAAGTCTTCGTTGGTGAACTTTACCAGCTCTGAGCTCCAAAAGGCGACCGATAATTTTAACAGTGAAAACCAAATTGGAAAGGGTGGTTATTCAGAAGTTTACAGGGGTTGTTTGAAAAGTGGGCAGCTAATAGCAGTCAAGCGGCTGACGAAAGGAACAGCAGATGAGAAAACAGCAGGCTTTCTATCTGAACTTGGCATTATAGCTCATGTTGATCATCCTAATGCCGCTAAGTTAATTGGATGTTGCGTTGAAGGAGGAATGTACCTCGTTTTTGAATTATCTTCACTTGGGAGTTTAGGATCGCTCCTGCACAGTCCGAAGGCTAACAAACTTGATTGGAGTAAAAGATACAAAATTGCTTTGGGGACAGCAGATGGTCTGCTATACCTTCATGAGAGTTGCCAAAGGCGAATCATTCATAGAGATATCAAAGCCGATAATATTCTGCTCACAGAGGATTTTGTGCCTCAGATATGTGATTTCGGGCTTGCAAAGTGGCTCCCCAAACAATGGACTCATCACAATGTCTCTAAATCTGAAGGCACATTCGGGTATTTTGCTCCCGAGTATTTCATGCATGGAATAGTAGATGAAAAAACCGATGTTTATTCTTTTGGAGTCCTACTCTTGGAGCTTATAACCGGGCGTCCAGCTTTGGATGATCTTCAGAACAGCCTTGTTCTTTGGGCAAAGCCTTTGCTTGATAACAATGAGATCAAGGAGCTTGTTGATCCTAATATTGGCGACAACTATGACCAGAAAGAGATGGATCACATGATTTTGACAGCGGCTTTATGCATCGAGCAGTCTTCTATTCTACGTCCTCGCATGAGTCAGGTTGTGGTGCTGCTGAGAGGCGATGAATACGTATCCAAATGTGCAAAAGAGTCGAAAAGGAGGTCCATACAAAGAACATACTCGGAAGAACTACTGGATGCACAAGAGTACAATTCAACAAAGTATCTGGGCGATCTCAACCGACACAAGCAGGTCGCTTTTGGTTCTTGA

Protein Analysis

492

Amino Acids

55.1

Weight (kDa)

8.36

Isoelectric Point (pI)

47.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 174 - 378 3.8e-40 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 176 - 436 4.6e-44 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1106
Acc36I ACCTGC 1 cut(s) 1447
AccB7I CCANNNNNTGG 1 cut(s) 978
AciI CCGC 4 cut(s) 383, 607, 693, 1256
AclWI GGATC 5 cut(s) 431, 444, 775, 1193, 1245
AcsI RAATTY 1 cut(s) 307
AcuI CTGAAG 3 cut(s) 92, 1026, 1118
AcyI GRCGYC 1 cut(s) 1114
AfaI GTAC 3 cut(s) 244, 731, 1415
AfeI AGCGCT 1 cut(s) 365
AfiI CCNNNNNNNGG 4 cut(s) 386, 978, 1096, 1208
AflII CTTAAG 1 cut(s) 359
AgsI TTSAA 7 cut(s) 230, 300, 466, 580, 719, 743, 1422
AhlI ACTAGT 1 cut(s) 239
AjuI GAANNNNNNNTTGG 4 cut(s) 73, 105, 522, 554
AluBI AGCT 9 cut(s) 44, 212, 492, 499, 592, 671, 1102, 1121, 1192
AluI AGCT 9 cut(s) 44, 212, 492, 499, 592, 671, 1102, 1121, 1192
Alw21I GWGCWC 1 cut(s) 501
Alw26I GTCTC 2 cut(s) 230, 1000
AlwI GGATC 5 cut(s) 431, 444, 775, 1193, 1245
Ama87I CYCGRG 1 cut(s) 1031
Aor51HI AGCGCT 1 cut(s) 365
ApeKI GCWGC 2 cut(s) 589, 1315
ApoI RAATTY 1 cut(s) 307
ArsI GACNNNNNNTTYG 2 cut(s) 1352, 1384
AspLEI GCGC 2 cut(s) 327, 366
AspS9I GGNCC 3 cut(s) 23, 76, 1368
AsuC2I CCSGG 1 cut(s) 1111
AsuHPI GGTGA 3 cut(s) 23, 109, 490
AsuII TTCGAA 1 cut(s) 305
AvaI CYCGRG 1 cut(s) 1031
AvaII GGWCC 3 cut(s) 23, 76, 1368
BamHI GGATCC 1 cut(s) 436
BanII GRGCYC 1 cut(s) 501
BauI CACGAG 1 cut(s) 274
BbsI GAAGAC 2 cut(s) 462, 1269
Bbv12I GWGCWC 1 cut(s) 501
BbvI GCAGC 2 cut(s) 601, 1302
BccI CCATC 2 cut(s) 836, 1228
BcgI CGANNNNNNTGC 2 cut(s) 1338, 1372
BciVI GTATCC 1 cut(s) 1348
BclI TGATCA 1 cut(s) 679
BcnI CCSGG 1 cut(s) 1111
BcoDI GTCTC 2 cut(s) 230, 1000
BcuI ACTAGT 1 cut(s) 239
BfaI CTAG 2 cut(s) 195, 240
BfoI RGCGCY 1 cut(s) 367
BfrI CTTAAG 1 cut(s) 359
BfuAI ACCTGC 1 cut(s) 1447
BfuI GTATCC 1 cut(s) 1348
BisI GCNGC 5 cut(s) 590, 608, 693, 1257, 1316
BlpI GCTNAGC 1 cut(s) 367
BlsI GCNGC 5 cut(s) 591, 609, 694, 1258, 1317
BmcAI AGTACT 1 cut(s) 244
Bme1390I CCNGG 1 cut(s) 1111
Bme18I GGWCC 3 cut(s) 23, 76, 1368
BmeT110I CYCGRG 1 cut(s) 1031
BmgT120I GGNCC 3 cut(s) 23, 76, 1368
BmiI GGNNCC 3 cut(s) 78, 438, 968
BmrFI CCNGG 1 cut(s) 1111
BmsI GCATC 2 cut(s) 1275, 1393
BpiI GAAGAC 2 cut(s) 462, 1269
BplI GAGNNNNNCTC 2 cut(s) 1077, 1109
Bpu1102I GCTNAGC 1 cut(s) 367
Bpu14I TTCGAA 1 cut(s) 305
BpuMI CCSGG 1 cut(s) 1111
BsaAI YACGTR 1 cut(s) 1336
BsaHI GRCGYC 1 cut(s) 1114
Bsc4I CCNNNNNNNGG 4 cut(s) 386, 978, 1096, 1208
Bse1I ACTGG 2 cut(s) 326, 1404
BseGI GGATG 5 cut(s) 187, 682, 713, 1132, 1408
BseLI CCNNNNNNNGG 4 cut(s) 386, 978, 1096, 1208
BseMII CTCAG 3 cut(s) 486, 950, 1310
BseNI ACTGG 2 cut(s) 326, 1404
BseRI GAGGAG 1 cut(s) 213
BseXI GCAGC 2 cut(s) 601, 1302
BsgI GTGCAG 1 cut(s) 761
Bsh1285I CGRYCG 1 cut(s) 513
BsiEI CGRYCG 1 cut(s) 513
BsiHKAI GWGCWC 1 cut(s) 501
BsiHKCI CYCGRG 1 cut(s) 1031
BsiSI CCGG 1 cut(s) 1110
BslFI GGGAC 2 cut(s) 62, 847
BslI CCNNNNNNNGG 4 cut(s) 386, 978, 1096, 1208
BsmAI GTCTC 2 cut(s) 230, 1000
BsmFI GGGAC 2 cut(s) 62, 847
BsoBI CYCGRG 1 cut(s) 1031
Bsp119I TTCGAA 1 cut(s) 305
Bsp1286I GDGCHC 1 cut(s) 501
Bsp143I GATC 9 cut(s) 353, 436, 679, 767, 1129, 1182, 1198, 1237, 1438
Bsp1720I GCTNAGC 1 cut(s) 367
BspACI CCGC 4 cut(s) 383, 607, 693, 1256
BspCNI CTCAG 3 cut(s) 487, 949, 1311
BspHI TCATGA 1 cut(s) 859
BspLI GGNNCC 3 cut(s) 78, 438, 968
BspMI ACCTGC 1 cut(s) 1447
BspPI GGATC 5 cut(s) 431, 444, 775, 1193, 1245
BspT104I TTCGAA 1 cut(s) 305
BspTI CTTAAG 1 cut(s) 359
BsrI ACTGG 2 cut(s) 326, 1404
BssMI GATC 9 cut(s) 353, 436, 679, 767, 1129, 1182, 1198, 1237, 1438
BssNI GRCGYC 1 cut(s) 1114
BssSI CACGAG 1 cut(s) 274
Bst2BI CACGAG 1 cut(s) 274
Bst4CI ACNGT 2 cut(s) 527, 782
BstACI GRCGYC 1 cut(s) 1114
BstAFI CTTAAG 1 cut(s) 359
BstBAI YACGTR 1 cut(s) 1336
BstBI TTCGAA 1 cut(s) 305
BstC8I GCNNGC 3 cut(s) 214, 643, 957
BstDEI CTNAG 6 cut(s) 93, 367, 495, 696, 936, 1319
BstF5I GGATG 5 cut(s) 187, 682, 713, 1132, 1408
BstH2I RGCGCY 1 cut(s) 367
BstHHI GCGC 2 cut(s) 327, 366
BstKTI GATC 9 cut(s) 356, 439, 682, 770, 1132, 1185, 1201, 1240, 1441
BstMAI GTCTC 2 cut(s) 230, 1000
BstMBI GATC 9 cut(s) 353, 436, 679, 767, 1129, 1182, 1198, 1237, 1438
BstMCI CGRYCG 1 cut(s) 513
BstMWI GCNNNNNNNGC 2 cut(s) 222, 391
BstSCI CCNGG 1 cut(s) 1109
BstSNI TACGTA 1 cut(s) 1336
BstV1I GCAGC 2 cut(s) 601, 1302
BstV2I GAAGAC 2 cut(s) 462, 1269
BstX2I RGATCY 1 cut(s) 436
BstYI RGATCY 1 cut(s) 436
BsuI GTATCC 1 cut(s) 1348
BtgZI GCGATG 1 cut(s) 1341
BtsCI GGATG 5 cut(s) 187, 682, 713, 1132, 1408
BtsIMutI CAGTG 4 cut(s) 68, 294, 319, 532
BveI ACCTGC 1 cut(s) 1447
Cac8I GCNNGC 3 cut(s) 214, 643, 957
CciI TCATGA 1 cut(s) 859
CfoI GCGC 2 cut(s) 327, 366
Cfr13I GGNCC 3 cut(s) 23, 76, 1368
CseI GACGC 1 cut(s) 1103
Csp6I GTAC 3 cut(s) 243, 730, 1414
CviAII CATG 7 cut(s) 36, 674, 860, 1042, 1046, 1243, 1297
CviQI GTAC 3 cut(s) 243, 730, 1414
DdeI CTNAG 6 cut(s) 93, 367, 495, 696, 936, 1319
DpnI GATC 9 cut(s) 355, 438, 681, 769, 1131, 1184, 1200, 1239, 1440
DpnII GATC 9 cut(s) 353, 436, 679, 767, 1129, 1182, 1198, 1237, 1438
DraI TTTAAA 1 cut(s) 337
Ecl136II GAGCTC 1 cut(s) 499
Eco105I TACGTA 1 cut(s) 1336
Eco24I GRGCYC 1 cut(s) 501
Eco32I GATATC 2 cut(s) 402, 895
Eco47I GGWCC 3 cut(s) 23, 76, 1368
Eco47III AGCGCT 1 cut(s) 365
Eco53kI GAGCTC 1 cut(s) 499
Eco57I CTGAAG 3 cut(s) 92, 1026, 1118
Eco88I CYCGRG 1 cut(s) 1031
EcoICRI GAGCTC 1 cut(s) 499
EcoO109I RGGNCCY 2 cut(s) 23, 76
EcoRI GAATTC 1 cut(s) 307
EcoRV GATATC 2 cut(s) 402, 895
EcoT22I ATGCAT 2 cut(s) 1047, 1268
EcoT38I GRGCYC 1 cut(s) 501
FaeI CATG 7 cut(s) 39, 677, 863, 1045, 1049, 1246, 1300
FalI AAGNNNNNCTT 2 cut(s) 108, 140
FaqI GGGAC 2 cut(s) 62, 847
FatI CATG 7 cut(s) 35, 673, 859, 1041, 1045, 1242, 1296
FbaI TGATCA 1 cut(s) 679
Fnu4HI GCNGC 5 cut(s) 590, 608, 693, 1257, 1316
FokI GGATG 5 cut(s) 194, 669, 720, 1139, 1415
FriOI GRGCYC 1 cut(s) 501
Fsp4HI GCNGC 5 cut(s) 590, 608, 693, 1257, 1316
FspBI CTAG 2 cut(s) 195, 240
GlaI GCGC 2 cut(s) 326, 365
GluI GCNGC 5 cut(s) 590, 608, 693, 1257, 1316
HaeII RGCGCY 1 cut(s) 367
HapII CCGG 1 cut(s) 1110
HgaI GACGC 1 cut(s) 1103
HhaI GCGC 2 cut(s) 327, 366
Hin1I GRCGYC 1 cut(s) 1114
Hin1II CATG 7 cut(s) 39, 677, 863, 1045, 1049, 1246, 1300
Hin6I GCGC 2 cut(s) 325, 364
HinP1I GCGC 2 cut(s) 325, 364
HindIII AAGCTT 1 cut(s) 210
HinfI GANTC 8 cut(s) 230, 281, 417, 879, 982, 1086, 1300, 1355
HpaII CCGG 1 cut(s) 1110
HphI GGTGA 3 cut(s) 23, 109, 490
Hpy166II GTNNAC 2 cut(s) 481, 565
Hpy188III TCNNGA 5 cut(s) 408, 421, 860, 1031, 1473
Hpy8I GTNNAC 2 cut(s) 481, 565
HpyAV CCTTC 7 cut(s) 67, 169, 385, 713, 781, 866, 1001
HpyCH4III ACNGT 2 cut(s) 527, 782
HpyCH4IV ACGT 2 cut(s) 1288, 1335
HpyCH4V TGCA 8 cut(s) 19, 428, 778, 959, 1045, 1266, 1349, 1406
HpyF10VI GCNNNNNNNGC 2 cut(s) 222, 391
HpyF3I CTNAG 6 cut(s) 93, 367, 495, 696, 936, 1319
HpySE526I ACGT 2 cut(s) 1288, 1335
Hsp92I GRCGYC 1 cut(s) 1114
Hsp92II CATG 7 cut(s) 39, 677, 863, 1045, 1049, 1246, 1300
HspAI GCGC 2 cut(s) 325, 364
Ksp22I TGATCA 1 cut(s) 679
Kzo9I GATC 9 cut(s) 353, 436, 679, 767, 1129, 1182, 1198, 1237, 1438
LmnI GCTCC 7 cut(s) 41, 504, 777, 972, 1033, 1099, 1189
Lsp1109I GCAGC 2 cut(s) 601, 1302
LweI GCATC 2 cut(s) 1275, 1393
MaeI CTAG 2 cut(s) 195, 240
MaeII ACGT 2 cut(s) 1288, 1335
MaeIII GTNAC 1 cut(s) 66
MalI GATC 9 cut(s) 355, 438, 681, 769, 1131, 1184, 1200, 1239, 1440
MboI GATC 9 cut(s) 353, 436, 679, 767, 1129, 1182, 1198, 1237, 1438
MboII GAAGA 8 cut(s) 409, 423, 426, 462, 741, 1124, 1269, 1403
MflI RGATCY 1 cut(s) 436
MhlI GDGCHC 1 cut(s) 501
MluCI AATT 7 cut(s) 307, 517, 537, 702, 743, 822, 1417
MlyI GAGTC 5 cut(s) 290, 976, 1095, 1309, 1364
Mph1103I ATGCAT 2 cut(s) 1047, 1268
MseI TTAA 5 cut(s) 336, 360, 446, 522, 701
MslI CAYNNNNRTG 2 cut(s) 687, 990
MspA1I CMGCKG 1 cut(s) 1256
MspCI CTTAAG 1 cut(s) 359
MspI CCGG 1 cut(s) 1110
MspR9I CCNGG 1 cut(s) 1111
MwoI GCNNNNNNNGC 2 cut(s) 222, 391
NciI CCSGG 1 cut(s) 1111
NdeII GATC 9 cut(s) 353, 436, 679, 767, 1129, 1182, 1198, 1237, 1438
NlaIII CATG 7 cut(s) 39, 677, 863, 1045, 1049, 1246, 1300
NlaIV GGNNCC 3 cut(s) 78, 438, 968
NmuCI GTSAC 1 cut(s) 66
NsiI ATGCAT 2 cut(s) 1047, 1268
NspV TTCGAA 1 cut(s) 305
PagI TCATGA 1 cut(s) 859
PfeI GAWTC 3 cut(s) 230, 417, 879
PflMI CCANNNNNTGG 1 cut(s) 978
PkrI GCNGC 5 cut(s) 591, 609, 694, 1258, 1317
PleI GAGTC 5 cut(s) 289, 976, 1094, 1308, 1363
PpsI GAGTC 5 cut(s) 289, 976, 1094, 1308, 1363
Ppu21I YACGTR 1 cut(s) 1336
PpuMI RGGWCCY 2 cut(s) 23, 76
PsiI TTATAA 1 cut(s) 1106
Psp124BI GAGCTC 1 cut(s) 501
Psp5II RGGWCCY 2 cut(s) 23, 76
PspN4I GGNNCC 3 cut(s) 78, 438, 968
PspPI GGNCC 3 cut(s) 23, 76, 1368
PspPPI RGGWCCY 2 cut(s) 23, 76
PsuI RGATCY 1 cut(s) 436
RsaI GTAC 3 cut(s) 244, 731, 1415
RsaNI GTAC 3 cut(s) 243, 730, 1414
RseI CAYNNNNRTG 2 cut(s) 687, 990
SacI GAGCTC 1 cut(s) 501
SaqAI TTAA 5 cut(s) 336, 360, 446, 522, 701
SatI GCNGC 5 cut(s) 590, 608, 693, 1257, 1316
Sau3AI GATC 9 cut(s) 353, 436, 679, 767, 1129, 1182, 1198, 1237, 1438
Sau96I GGNCC 3 cut(s) 23, 76, 1368
ScaI AGTACT 1 cut(s) 244
SchI GAGTC 5 cut(s) 290, 976, 1095, 1309, 1364
ScrFI CCNGG 1 cut(s) 1111
SduI GDGCHC 1 cut(s) 501
SfaNI GCATC 2 cut(s) 1275, 1393
SfuI TTCGAA 1 cut(s) 305
SinI GGWCC 3 cut(s) 23, 76, 1368
SmiMI CAYNNNNRTG 2 cut(s) 687, 990
SmlI CTYRAG 1 cut(s) 359
SmoI CTYRAG 1 cut(s) 359
SnaBI TACGTA 1 cut(s) 1336
SpeI ACTAGT 1 cut(s) 239
Sse9I AATT 7 cut(s) 307, 517, 537, 702, 743, 822, 1417
SsiI CCGC 4 cut(s) 383, 607, 693, 1256
SspI AATATT 2 cut(s) 910, 1207
SspMI CTAG 2 cut(s) 195, 240
SstI GAGCTC 1 cut(s) 501
StyD4I CCNGG 1 cut(s) 1109
TaaI ACNGT 2 cut(s) 527, 782
TaiI ACGT 2 cut(s) 1291, 1338
TaqI TCGA 3 cut(s) 305, 1269, 1358
TaqII GACCGA 1 cut(s) 527
TasI AATT 7 cut(s) 307, 517, 537, 702, 743, 822, 1417
TatI WGTACW 2 cut(s) 242, 1413
TauI GCSGC 3 cut(s) 610, 695, 1259
TfiI GAWTC 3 cut(s) 230, 417, 879
Tru1I TTAA 5 cut(s) 336, 360, 446, 522, 701
Tru9I TTAA 5 cut(s) 336, 360, 446, 522, 701
TscAI CASTG 4 cut(s) 75, 294, 326, 532
TseFI GTSAC 1 cut(s) 66
TseI GCWGC 2 cut(s) 589, 1315
Tsp45I GTSAC 1 cut(s) 66
TspDTI ATGAA 6 cut(s) 24, 848, 875, 1030, 1074, 1344
TspRI CASTG 4 cut(s) 75, 294, 326, 532
Van91I CCANNNNNTGG 1 cut(s) 978
Vha464I CTTAAG 1 cut(s) 359
VpaK11BI GGWCC 3 cut(s) 23, 76, 1368
XapI RAATTY 1 cut(s) 307
XspI CTAG 2 cut(s) 195, 240
ZrmI AGTACT 1 cut(s) 244
Zsp2I ATGCAT 2 cut(s) 1047, 1268
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.