Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0007101

Physical Location & Seq

Genomic Coordinates Reverse (-)

3681278 .. 3686121

Gene Structure 4844 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG053900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1239 bp

ATGGAAAGCTTTGAATCTGAAACTAGCATTTCTGAAAACAGCAAACCAGAAGCAGAAGCTTCTTGTCCAGATTCAAAGCCTCAATCTCACTGGTGTAGATTTTTTAAGCTGTGGAGTAAAAGATCAATCAAGCAGCACTTCTTCCCTCTTGGTGTATCCAAGATGTCAATAAAAAGAAGGAGCAACAGTACAAAAGACAATTCAGTACTGACTAATATCTACAACTTCAAGTCTCCATTAAAGAGTTTCTCCTTCTCTGCACTCCAAACCGCCACCAATAATTTCAACAATGAAAATATAATTGGAAAGGGTGGCTATTCCGAAGTATATAGGGGGACTTTAAAGGATGGGCAACTAGTAGCAGTAAAGCGGCTGACTAATGGAACATCCGATGAGAAAACTGCAGGCTTTCTATCTGAACTTGGCATTATAGCTCATGTAGATCATCCTAATACTGCTAAGCTAATTGGCTGTTGCGTTGAAAAAGGAATGCACCTTGTTTTCCAATTATCTCCACTTGGGAGTTTAGGATCTCTCCTGCATGGTCCAAAGAATTATGTTCTTGATTGGAGTAAAAGGTATAAAATTGCATTAGGGGCAGCAGATGGTCTGCTGTATCTTCATGATAGTTGTCAGAGGCGAATCATCCATAGAGATATCAAGGCTGATAATATTCTACTTACAGAGGATTTTGTGCCTCAGATATGTGACTTTGGGCTTGCAAAGTGGCTACCGAAACAATGGACTCATCACAACGTCTCCAAGTTTGAGGGCACATTTGGGTATTTTGCTCCTGAATATTTCATGCATGGGATTGTAGATGAAAAGACTGATGTTTATTCTTTTGGAGTCCTACTCTTGGAGCTTATAACTGGGCGACCAGCTTTGGATAATCTTCAGCAAAGCCTTGTAATTTGGGCAAAGCCCTTGCTTAATAAAAATGACGTCAAGGAGCTTGTTGATCCTTCTATTGGTGACAACTATGACAGCACAGAGATGGATCATATGATTTTGACTGCATCTTTATGCATAGAGCAGTCTTCTATTCTACGTCCTCGCATGAGTCAGGTTGTGGTACTGCTAAGAGGTGACGAGTATGTCTCCAAGTGTGCAAGAGAAACGAAAAGGAGGTCCCTGCTGAGAACATACTCGGAAGAACTGATGGATGCACAAGAATATAACTCAACAAAGTATCTGAGGGATCTCCGCCGACACAAGCAGATTGCTTTTGACATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051020 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

412

Amino Acids

46.82

Weight (kDa)

8.46

Isoelectric Point (pI)

52.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	95 - 301	1.7e-39	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	98 - 305	4.2e-42	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007101)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05140 AT3G05140
fragaria_vesca	FvH4_6g04990 FvH4_6g04990 FvH4_6g04990 FvH4_6g04990 FvH4_6g04990 FvH4_6g04990
malus_domestica	MD04G1211700.v1.1 MD12G1226600.v1.1
prunus_persica	Prupe.6G332300_v2.0.a1 Prupe.6G332300_v2.0.a1 Prupe.6G332300_v2.0.a1
pyrus_communis	pycom04g18770 pycom12g21110
rosa_chinensis	RchiOBHm_Chr3g0453501
rosa_laevigata	RLG00000025508
rosa_multiflora	Rmu_sc0000510.1_g000014
rosa_roxburghii	Rroxscaffold_6G00430470
rosa_rugosa	Rorug02G0649600 Rorug02G0649600
rosa_samantha	Rh3AG052500 Rh3BG053900 Rh3CG053300 Rh3DG054100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	869
AasI	GACNNNNNNGTC	1 cut(s)	1097
AatII	GACGTC	1 cut(s)	948
AciI	CCGC	3 cut(s)	270, 370, 1207
AclWI	GGATC	4 cut(s)	538, 956, 1008, 1209
AcuI	CTGAAG	1 cut(s)	881
AcyI	GRCGYC	1 cut(s)	945
AfaI	GTAC	3 cut(s)	190, 207, 1077
AfiI	CCNNNNNNNGG	2 cut(s)	859, 971
AgsI	TTSAA	5 cut(s)	14, 75, 229, 286, 482
AhlI	ACTAGT	1 cut(s)	355
AjuI	GAANNNNNNNTTGG	2 cut(s)	285, 317
AluBI	AGCT	8 cut(s)	9, 59, 109, 434, 463, 865, 884, 955
AluI	AGCT	8 cut(s)	9, 59, 109, 434, 463, 865, 884, 955
Alw26I	GTCTC	3 cut(s)	237, 763, 1105
AlwI	GGATC	4 cut(s)	538, 956, 1008, 1209
ApeKI	GCWGC	2 cut(s)	133, 599
ArsI	GACNNNNNNTTYG	2 cut(s)	1115, 1147
AspS9I	GGNCC	2 cut(s)	545, 1131
AsuHPI	GGTGA	2 cut(s)	986, 1100
AvaII	GGWCC	2 cut(s)	545, 1131
BaeGI	GKGCMC	1 cut(s)	776
BbsI	GAAGAC	1 cut(s)	1032
BbvI	GCAGC	2 cut(s)	145, 611
BccI	CCATC	4 cut(s)	341, 599, 991, 1156
BciVI	GTATCC	1 cut(s)	166
BcoDI	GTCTC	3 cut(s)	237, 763, 1105
BcuI	ACTAGT	1 cut(s)	355
BfaI	CTAG	2 cut(s)	24, 356
BfmI	CTRYAG	1 cut(s)	402
BfuI	GTATCC	1 cut(s)	166
BisI	GCNGC	3 cut(s)	134, 371, 600
BlpI	GCTNAGC	1 cut(s)	459
BlsI	GCNGC	3 cut(s)	135, 372, 601
BmcAI	AGTACT	1 cut(s)	207
Bme18I	GGWCC	2 cut(s)	545, 1131
BmgT120I	GGNCC	2 cut(s)	545, 1131
BmiI	GGNNCC	1 cut(s)	1133
BmrI	ACTGGG	1 cut(s)	882
BmsI	GCATC	2 cut(s)	1028, 1156
BmuI	ACTGGG	1 cut(s)	882
BpiI	GAAGAC	1 cut(s)	1032
BplI	GAGNNNNNCTC	4 cut(s)	840, 872, 1085, 1117
Bpu1102I	GCTNAGC	1 cut(s)	459
BsaHI	GRCGYC	1 cut(s)	945
BsaXI	ACNNNNNCTCC	4 cut(s)	172, 202, 743, 773
Bsc4I	CCNNNNNNNGG	2 cut(s)	859, 971
Bse1I	ACTGG	2 cut(s)	95, 877
BseGI	GGATG	5 cut(s)	352, 386, 445, 645, 1171
BseLI	CCNNNNNNNGG	2 cut(s)	859, 971
BseMII	CTCAG	3 cut(s)	713, 1130, 1187
BseNI	ACTGG	2 cut(s)	95, 877
BseSI	GKGCMC	1 cut(s)	776
BseXI	GCAGC	2 cut(s)	145, 611
BsgI	GTGCAG	1 cut(s)	243
BslFI	GGGAC	2 cut(s)	349, 1117
BslI	CCNNNNNNNGG	2 cut(s)	859, 971
BsmAI	GTCTC	3 cut(s)	237, 763, 1105
BsmBI	CGTCTC	1 cut(s)	763
BsmFI	GGGAC	2 cut(s)	349, 1117
BsmI	GAATGC	1 cut(s)	495
Bsp1286I	GDGCHC	1 cut(s)	776
Bsp143I	GATC	6 cut(s)	122, 442, 530, 961, 1000, 1201
Bsp1720I	GCTNAGC	1 cut(s)	459
BspACI	CCGC	3 cut(s)	270, 370, 1207
BspCNI	CTCAG	3 cut(s)	712, 1131, 1188
BspHI	TCATGA	1 cut(s)	622
BspLI	GGNNCC	1 cut(s)	1133
BspMAI	CTGCAG	1 cut(s)	406
BspPI	GGATC	4 cut(s)	538, 956, 1008, 1209
BsrI	ACTGG	2 cut(s)	95, 877
BssMI	GATC	6 cut(s)	122, 442, 530, 961, 1000, 1201
BssNI	GRCGYC	1 cut(s)	945
Bst4CI	ACNGT	1 cut(s)	188
BstACI	GRCGYC	1 cut(s)	945
BstC8I	GCNNGC	2 cut(s)	406, 720
BstDEI	CTNAG	5 cut(s)	459, 699, 1082, 1139, 1196
BstF5I	GGATG	5 cut(s)	352, 386, 445, 645, 1171
BstKTI	GATC	6 cut(s)	125, 445, 533, 964, 1003, 1204
BstMAI	GTCTC	3 cut(s)	237, 763, 1105
BstMBI	GATC	6 cut(s)	122, 442, 530, 961, 1000, 1201
BstMWI	GCNNNNNNNGC	1 cut(s)	596
BstSFI	CTRYAG	1 cut(s)	402
BstSLI	GKGCMC	1 cut(s)	776
BstV1I	GCAGC	2 cut(s)	145, 611
BstV2I	GAAGAC	1 cut(s)	1032
BstX2I	RGATCY	2 cut(s)	530, 1201
BstYI	RGATCY	2 cut(s)	530, 1201
BsuI	GTATCC	1 cut(s)	166
BtsCI	GGATG	5 cut(s)	352, 386, 445, 645, 1171
BtsIMutI	CAGTG	1 cut(s)	88
Cac8I	GCNNGC	2 cut(s)	406, 720
CciI	TCATGA	1 cut(s)	622
Cfr13I	GGNCC	2 cut(s)	545, 1131
Csp6I	GTAC	3 cut(s)	189, 206, 1076
CviAII	CATG	6 cut(s)	437, 542, 623, 805, 809, 1060
CviQI	GTAC	3 cut(s)	189, 206, 1076
DdeI	CTNAG	5 cut(s)	459, 699, 1082, 1139, 1196
DpnI	GATC	6 cut(s)	124, 444, 532, 963, 1002, 1203
DpnII	GATC	6 cut(s)	122, 442, 530, 961, 1000, 1201
DraI	TTTAAA	1 cut(s)	342
DrdI	GACNNNNNNGTC	1 cut(s)	1097
DseDI	GACNNNNNNGTC	1 cut(s)	1097
EciI	GGCGGA	1 cut(s)	1196
Eco32I	GATATC	1 cut(s)	658
Eco47I	GGWCC	2 cut(s)	545, 1131
Eco57I	CTGAAG	1 cut(s)	881
EcoO109I	RGGNCCY	1 cut(s)	1131
EcoRV	GATATC	1 cut(s)	658
EcoT22I	ATGCAT	2 cut(s)	810, 1031
Esp3I	CGTCTC	1 cut(s)	763
FaeI	CATG	6 cut(s)	440, 545, 626, 808, 812, 1063
FalI	AAGNNNNNCTT	2 cut(s)	122, 154
FaqI	GGGAC	2 cut(s)	349, 1117
FatI	CATG	6 cut(s)	436, 541, 622, 804, 808, 1059
FauNDI	CATATG	1 cut(s)	1005
Fnu4HI	GCNGC	3 cut(s)	134, 371, 600
FokI	GGATG	5 cut(s)	359, 373, 432, 632, 1178
Fsp4HI	GCNGC	3 cut(s)	134, 371, 600
FspBI	CTAG	2 cut(s)	24, 356
GluI	GCNGC	3 cut(s)	134, 371, 600
Hin1I	GRCGYC	1 cut(s)	945
Hin1II	CATG	6 cut(s)	440, 545, 626, 808, 812, 1063
HindIII	AAGCTT	2 cut(s)	7, 57
HinfI	GANTC	6 cut(s)	14, 71, 642, 745, 849, 1063
HphI	GGTGA	2 cut(s)	986, 1100
Hpy188I	TCNGA	9 cut(s)	19, 34, 322, 391, 418, 636, 702, 1153, 1197
Hpy188III	TCNNGA	4 cut(s)	68, 563, 623, 794
HpyAV	CCTTC	3 cut(s)	171, 262, 975
HpyCH4III	ACNGT	1 cut(s)	188
HpyCH4IV	ACGT	3 cut(s)	756, 945, 1051
HpyF10VI	GCNNNNNNNGC	1 cut(s)	596
HpyF3I	CTNAG	5 cut(s)	459, 699, 1082, 1139, 1196
HpySE526I	ACGT	3 cut(s)	756, 945, 1051
Hsp92I	GRCGYC	1 cut(s)	945
Hsp92II	CATG	6 cut(s)	440, 545, 626, 808, 812, 1063
Kzo9I	GATC	6 cut(s)	122, 442, 530, 961, 1000, 1201
LmnI	GCTCC	4 cut(s)	180, 796, 862, 952
Lsp1109I	GCAGC	2 cut(s)	145, 611
LweI	GCATC	2 cut(s)	1028, 1156
MaeI	CTAG	2 cut(s)	24, 356
MaeII	ACGT	3 cut(s)	756, 945, 1051
MaeIII	GTNAC	3 cut(s)	707, 974, 1088
MalI	GATC	6 cut(s)	124, 444, 532, 963, 1002, 1203
MboI	GATC	6 cut(s)	122, 442, 530, 961, 1000, 1201
MboII	GAAGA	5 cut(s)	133, 611, 887, 1032, 1166
MflI	RGATCY	2 cut(s)	530, 1201
MhlI	GDGCHC	1 cut(s)	776
MluCI	AATT	8 cut(s)	199, 280, 300, 465, 506, 553, 585, 912
MlyI	GAGTC	3 cut(s)	739, 858, 1072
Mph1103I	ATGCAT	2 cut(s)	810, 1031
MseI	TTAA	4 cut(s)	105, 239, 341, 933
MslI	CAYNNNNRTG	2 cut(s)	995, 1024
Mva1269I	GAATGC	1 cut(s)	495
MwoI	GCNNNNNNNGC	1 cut(s)	596
NdeI	CATATG	1 cut(s)	1005
NdeII	GATC	6 cut(s)	122, 442, 530, 961, 1000, 1201
NlaIII	CATG	6 cut(s)	440, 545, 626, 808, 812, 1063
NlaIV	GGNNCC	1 cut(s)	1133
NmuCI	GTSAC	3 cut(s)	707, 974, 1088
NsiI	ATGCAT	2 cut(s)	810, 1031
PagI	TCATGA	1 cut(s)	622
PctI	GAATGC	1 cut(s)	495
PfeI	GAWTC	3 cut(s)	14, 71, 642
PkrI	GCNGC	3 cut(s)	135, 372, 601
PleI	GAGTC	3 cut(s)	739, 857, 1071
PpsI	GAGTC	3 cut(s)	739, 857, 1071
PpuMI	RGGWCCY	1 cut(s)	1131
PsiI	TTATAA	1 cut(s)	869
Psp5II	RGGWCCY	1 cut(s)	1131
PspN4I	GGNNCC	1 cut(s)	1133
PspPI	GGNCC	2 cut(s)	545, 1131
PspPPI	RGGWCCY	1 cut(s)	1131
PstI	CTGCAG	1 cut(s)	406
PsuI	RGATCY	2 cut(s)	530, 1201
RsaI	GTAC	3 cut(s)	190, 207, 1077
RsaNI	GTAC	3 cut(s)	189, 206, 1076
RseI	CAYNNNNRTG	2 cut(s)	995, 1024
SaqAI	TTAA	4 cut(s)	105, 239, 341, 933
SatI	GCNGC	3 cut(s)	134, 371, 600
Sau3AI	GATC	6 cut(s)	122, 442, 530, 961, 1000, 1201
Sau96I	GGNCC	2 cut(s)	545, 1131
ScaI	AGTACT	1 cut(s)	207
SchI	GAGTC	3 cut(s)	739, 858, 1072
SduI	GDGCHC	1 cut(s)	776
SfaNI	GCATC	2 cut(s)	1028, 1156
SfcI	CTRYAG	1 cut(s)	402
SinI	GGWCC	2 cut(s)	545, 1131
SmiMI	CAYNNNNRTG	2 cut(s)	995, 1024
SpeI	ACTAGT	1 cut(s)	355
Sse9I	AATT	8 cut(s)	199, 280, 300, 465, 506, 553, 585, 912
SsiI	CCGC	3 cut(s)	270, 370, 1207
SspI	AATATT	2 cut(s)	673, 800
SspMI	CTAG	2 cut(s)	24, 356
TaaI	ACNGT	1 cut(s)	188
TaiI	ACGT	3 cut(s)	759, 948, 1054
TasI	AATT	8 cut(s)	199, 280, 300, 465, 506, 553, 585, 912
TatI	WGTACW	2 cut(s)	188, 205
TauI	GCSGC	1 cut(s)	373
TfiI	GAWTC	3 cut(s)	14, 71, 642
Tru1I	TTAA	4 cut(s)	105, 239, 341, 933
Tru9I	TTAA	4 cut(s)	105, 239, 341, 933
TscAI	CASTG	1 cut(s)	95
TseFI	GTSAC	3 cut(s)	707, 974, 1088
TseI	GCWGC	2 cut(s)	133, 599
Tsp45I	GTSAC	3 cut(s)	707, 974, 1088
TspDTI	ATGAA	4 cut(s)	306, 611, 793, 837
TspRI	CASTG	1 cut(s)	95
VpaK11BI	GGWCC	2 cut(s)	545, 1131
XspI	CTAG	2 cut(s)	24, 356
ZraI	GACGTC	1 cut(s)	946
ZrmI	AGTACT	1 cut(s)	207
Zsp2I	ATGCAT	2 cut(s)	810, 1031

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.